Wall clock time and date at job start Tue Mar 31 2020 10:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 H 1.08994 * 109.47206 * 55.00493 * 3 2 1 5 5 C 1.53001 * 109.47248 * 295.00027 * 3 2 1 6 6 C 1.53005 * 109.47122 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46772 * 60.00002 * 6 5 3 8 8 C 1.53005 * 109.47610 * 300.00046 * 7 6 5 9 9 C 1.53001 * 109.46874 * 175.00342 * 3 2 1 10 10 H 1.08999 * 109.47484 * 59.99929 * 9 3 2 11 11 N 1.46900 * 109.47314 * 299.99987 * 9 3 2 12 12 C 1.46895 * 111.00322 * 155.00002 * 11 9 3 13 13 C 1.50698 * 109.47180 * 180.02562 * 12 11 9 14 14 C 1.38325 * 119.96491 * 90.00055 * 13 12 11 15 15 C 1.38283 * 120.13624 * 179.97438 * 14 13 12 16 16 C 1.38129 * 120.07150 * 0.02562 * 15 14 13 17 17 C 1.38856 * 119.92490 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.06358 * 179.97438 * 17 16 15 19 19 C 1.34831 * 117.00127 * 354.46102 * 18 17 16 20 20 H 1.08000 * 120.00231 * 5.05691 * 19 18 17 21 21 C 1.38653 * 119.99940 * 185.05488 * 19 18 17 22 22 N 1.31558 * 120.00321 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00073 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46938 * 89.99897 * 23 21 19 25 25 H 1.48491 * 109.47441 * 210.00072 * 23 21 19 26 26 H 1.48505 * 109.47110 * 330.00441 * 23 21 19 27 27 C 1.38077 * 119.96738 * 269.72847 * 13 12 11 28 28 H 1.08989 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46767 * 300.00168 * 1 2 3 30 30 H 1.09006 * 109.47162 * 59.99033 * 1 2 3 31 31 H 1.09006 * 109.46702 * 240.00255 * 2 1 3 32 32 H 1.08993 * 109.47156 * 120.00359 * 2 1 3 33 33 H 1.08995 * 109.46801 * 60.00383 * 5 3 2 34 34 H 1.08999 * 109.47077 * 300.00051 * 5 3 2 35 35 H 1.09000 * 109.46994 * 300.00755 * 6 5 3 36 36 H 1.08994 * 109.47021 * 179.97438 * 6 5 3 37 37 H 1.09002 * 109.46848 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.47149 * 60.00455 * 7 6 5 39 39 H 1.08999 * 109.46793 * 300.00254 * 8 7 6 40 40 H 1.08995 * 109.47115 * 179.97438 * 8 7 6 41 41 H 1.00905 * 110.99923 * 31.04444 * 11 9 3 42 42 H 1.09001 * 109.47321 * 300.00198 * 12 11 9 43 43 H 1.08997 * 109.47173 * 60.00517 * 12 11 9 44 44 H 1.07990 * 119.93258 * 0.02612 * 14 13 12 45 45 H 1.08003 * 119.96469 * 179.97438 * 15 14 13 46 46 H 1.07993 * 120.03461 * 179.97438 * 16 15 14 47 47 H 0.96997 * 119.99739 * 179.97438 * 22 21 19 48 48 H 1.08001 * 120.03382 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5693 -1.3070 7 6 3.6696 3.5715 -1.1810 8 6 4.0744 2.8874 0.1263 9 6 3.5649 1.4442 0.1256 10 1 3.9995 0.9051 -0.7162 11 7 3.9536 0.7873 1.3808 12 6 5.3136 0.2398 1.2893 13 6 5.6761 -0.4251 2.5922 14 6 5.3978 -1.7664 2.7842 15 6 5.7294 -2.3803 3.9781 16 6 6.3394 -1.6552 4.9832 17 6 6.6200 -0.3086 4.7934 18 8 7.2190 0.4068 5.7794 19 6 7.4112 -0.2179 6.9587 20 1 7.1683 -1.2653 7.0609 21 6 7.9207 0.4842 8.0402 22 7 8.2162 1.7602 7.9160 23 14 8.1864 -0.3811 9.6743 24 1 9.5571 -0.9508 9.7156 25 1 8.0216 0.5930 10.7829 26 1 7.1916 -1.4736 9.8233 27 6 6.2908 0.3037 3.5909 28 1 -0.3633 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.5490 2.1253 -1.3968 34 1 2.0699 1.5875 -2.1492 35 1 1.7099 4.1080 -0.4652 36 1 1.8569 4.0564 -2.2386 37 1 4.0326 4.5993 -1.1812 38 1 4.1046 3.0328 -2.0229 39 1 3.6395 3.4262 0.9681 40 1 5.1607 2.8886 0.2158 41 1 3.2910 0.0695 1.6336 42 1 5.3568 -0.4929 0.4835 43 1 6.0171 1.0468 1.0848 44 1 4.9213 -2.3356 1.9998 45 1 5.5104 -3.4276 4.1253 46 1 6.5977 -2.1351 5.9155 47 1 8.5724 2.2514 8.6728 48 1 6.5122 1.3498 3.4386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037294488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:19 Heat of formation + Delta-G solvation = -49.560297 kcal Electronic energy + Delta-G solvation = -24575.079547 eV Core-core repulsion = 21207.381445 eV Total energy + Delta-G solvation = -3367.698102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86831 -40.28520 -38.44122 -35.89234 -34.84871 -34.27881 -32.35939 -30.84632 -30.13100 -29.10845 -27.39220 -25.80084 -24.83393 -23.22280 -22.56366 -22.09694 -21.51407 -20.65727 -19.49427 -18.74978 -17.12153 -16.70900 -16.44783 -16.16532 -16.06338 -15.71436 -15.57698 -15.40847 -14.99984 -14.85878 -14.48514 -14.30892 -14.05951 -14.02501 -13.67376 -13.48392 -13.24647 -13.10036 -12.93232 -12.49115 -12.45886 -12.35996 -12.27170 -12.20030 -12.14299 -12.07436 -11.88579 -11.60742 -11.33079 -11.18561 -10.92389 -10.82665 -10.78189 -9.67375 -9.29160 -8.97227 -8.46348 -6.15060 0.53630 0.75140 1.34487 1.44280 1.52490 2.17962 2.79250 3.08589 3.40561 3.48065 3.72055 3.79232 3.95784 4.02383 4.12707 4.19400 4.31740 4.35216 4.39551 4.43882 4.44677 4.53217 4.59312 4.61276 4.65000 4.68758 4.76482 4.79211 4.86542 4.95824 5.04981 5.09274 5.13369 5.14230 5.18460 5.27001 5.31157 5.31903 5.34768 5.39055 5.42748 5.50611 5.61034 5.67678 5.74172 5.78229 6.03538 6.15038 6.26840 6.53716 6.98174 7.80251 8.77229 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002817 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.410898 B = 9937.310142 C =10552.324857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.084 4.084 4 H 0.063 0.937 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.110 4.110 9 C 0.097 3.903 10 H 0.048 0.952 11 N -0.695 5.695 12 C 0.113 3.887 13 C -0.037 4.037 14 C -0.184 4.184 15 C -0.070 4.070 16 C -0.245 4.245 17 C 0.112 3.888 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.184 4.184 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.346 0.654 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.118 0.882 47 H 0.272 0.728 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 -3.812 -19.829 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.103 4.103 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.012 4.012 10 H 0.066 0.934 11 N -0.329 5.329 12 C -0.015 4.015 13 C -0.038 4.038 14 C -0.203 4.203 15 C -0.088 4.088 16 C -0.265 4.265 17 C 0.062 3.938 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.204 4.204 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.168 0.832 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.136 0.864 47 H 0.081 0.919 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.791 -2.839 -19.416 23.984 hybrid contribution 0.483 -0.619 0.753 1.088 sum -13.308 -3.458 -18.662 23.181 Atomic orbital electron populations 1.21775 0.94922 1.01933 1.02057 1.21614 0.96881 0.95804 1.01748 1.21285 0.93442 0.96615 0.98953 0.91842 1.21577 1.01291 0.95324 0.96300 1.21548 0.95095 0.96982 1.02037 1.21514 0.96574 1.00432 0.96770 1.21552 0.99888 0.95405 0.98016 1.21556 0.95325 0.94668 0.89613 0.93371 1.60468 1.02807 1.35723 1.33886 1.20766 0.91289 0.97328 0.92115 1.19583 0.95787 0.93728 0.94670 1.20971 1.06438 0.94188 0.98677 1.21132 0.95375 0.99991 0.92325 1.21302 1.09067 0.93984 1.02126 1.19905 0.92152 0.91850 0.89861 1.83945 1.68971 1.40622 1.20648 1.21827 1.44850 0.96165 0.86122 0.88125 1.26615 0.95979 0.96474 1.03088 1.70197 1.42900 1.09678 1.33291 0.84579 0.79537 0.77721 0.74304 1.18715 1.19595 1.17621 1.20188 1.07573 0.99629 0.92987 0.92366 0.93262 0.91658 0.91427 0.92567 0.90630 0.91437 0.92617 0.90771 0.91802 0.91512 0.93054 0.93371 0.83213 0.92336 0.91219 0.83593 0.83593 0.86438 0.91881 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.28 16 2 C -0.12 -1.84 5.27 30.59 0.16 -1.68 16 3 C -0.08 -1.43 1.85 -10.79 -0.02 -1.45 16 4 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.11 -1.44 4.96 30.60 0.15 -1.29 16 6 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 7 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 8 C -0.11 -2.41 5.43 30.61 0.17 -2.25 16 9 C 0.10 1.99 1.98 44.93 0.09 2.08 16 10 H 0.05 0.93 7.80 -2.39 -0.02 0.91 16 11 N -0.69 -17.70 6.30 -495.50 -3.12 -20.82 16 12 C 0.11 3.08 5.61 85.56 0.48 3.56 16 13 C -0.04 -1.29 5.39 -19.88 -0.11 -1.40 16 14 C -0.18 -5.70 9.70 22.30 0.22 -5.49 16 15 C -0.07 -2.42 10.04 22.25 0.22 -2.20 16 16 C -0.25 -10.95 9.17 22.39 0.21 -10.75 16 17 C 0.11 5.82 6.65 22.58 0.15 5.97 16 18 O -0.23 -14.67 9.76 -22.76 -0.22 -14.90 16 19 C -0.41 -24.76 9.49 67.92 0.64 -24.11 16 20 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 21 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 22 N -0.92 -58.04 13.67 21.61 0.30 -57.74 16 23 Si 1.02 43.75 29.55 68.60 2.03 45.78 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 27 C -0.18 -8.31 9.64 22.39 0.22 -8.09 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.73 6.57 -2.38 -0.02 0.72 16 31 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.95 6.03 -2.39 -0.01 0.93 16 33 H 0.08 0.88 6.56 -2.39 -0.02 0.86 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.16 7.46 -2.39 -0.02 1.15 16 41 H 0.35 8.32 6.09 -89.69 -0.55 7.77 16 42 H 0.06 1.31 8.00 -2.39 -0.02 1.29 16 43 H 0.07 2.00 7.38 -2.39 -0.02 1.98 16 44 H 0.15 3.34 8.06 -2.92 -0.02 3.32 16 45 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 46 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 47 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 48 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -70.93 373.40 3.47 -67.47 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.39 Total: 32.78 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 4.10 Total: -52.56 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.82 Total: -78.56 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.93 3.47 -67.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037294488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.905 kcal (2) G-P(sol) polarization free energy of solvation -70.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds