Wall clock time and date at job start Tue Mar 31 2020 09:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47189 * 2 1 4 4 C 1.52996 * 109.47071 * 120.00332 * 2 1 3 5 5 N 1.46501 * 109.47073 * 65.00302 * 4 2 1 6 6 C 1.46500 * 119.99540 * 269.99619 * 5 4 2 7 7 C 1.50705 * 109.47370 * 270.00046 * 6 5 4 8 8 H 1.07997 * 119.99361 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99788 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00164 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46786 * 60.00193 * 11 9 7 13 13 H 1.48499 * 109.47029 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47051 * 299.99884 * 11 9 7 15 15 C 1.34773 * 120.00546 * 89.99841 * 5 4 2 16 16 O 1.21274 * 120.00284 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99652 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.46901 * 180.02562 * 17 15 5 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 15 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.08996 * 109.46943 * 59.99255 * 1 2 3 27 27 H 1.08993 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46685 * 299.99864 * 1 2 3 29 29 H 1.08998 * 109.46956 * 240.00774 * 2 1 3 30 30 H 1.09002 * 109.47165 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47378 * 300.00552 * 3 2 1 32 32 H 1.09006 * 109.46707 * 60.00275 * 3 2 1 33 33 H 1.08999 * 109.47311 * 304.99747 * 4 2 1 34 34 H 1.09002 * 109.47146 * 184.99816 * 4 2 1 35 35 H 1.09002 * 109.47117 * 29.99735 * 6 5 4 36 36 H 1.09000 * 109.46967 * 149.99833 * 6 5 4 37 37 H 0.96998 * 119.99589 * 180.02562 * 10 9 7 38 38 H 1.08992 * 109.47447 * 60.00244 * 17 15 5 39 39 H 1.08999 * 109.46636 * 299.99870 * 17 15 5 40 40 H 1.08995 * 109.47671 * 59.99705 * 18 17 15 41 41 H 1.09004 * 109.46984 * 299.99721 * 18 17 15 42 42 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 43 43 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 44 44 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5660 1.7611 7 6 0.5717 -2.9410 3.2074 8 1 1.5508 -2.8640 3.6565 9 6 -0.4979 -3.3824 3.9570 10 7 -1.6902 -3.4766 3.4098 11 14 -0.2535 -3.8478 5.7495 12 1 0.2508 -2.6712 6.5021 13 1 -1.5489 -4.2867 6.3280 14 1 0.7316 -4.9550 5.8435 15 6 2.4715 -3.0331 0.6113 16 8 2.1504 -4.2015 0.5623 17 6 3.7858 -2.5874 0.0238 18 6 4.5162 -3.7953 -0.5666 19 6 5.8502 -3.3428 -1.1636 20 6 6.5699 -4.5326 -1.7446 21 6 6.3640 -4.8881 -3.0645 22 6 7.0246 -5.9792 -3.5975 23 6 7.8916 -6.7143 -2.8108 24 6 8.0934 -6.3620 -1.4895 25 6 7.4363 -5.2682 -0.9577 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2951 35 1 -0.3483 -1.7532 1.6918 36 1 0.0043 -3.4298 1.2090 37 1 -2.4428 -3.7868 3.9374 38 1 4.3990 -2.1376 0.8045 39 1 3.6026 -1.8544 -0.7619 40 1 3.9029 -4.2448 -1.3475 41 1 4.6993 -4.5286 0.2188 42 1 6.4638 -2.8930 -0.3830 43 1 5.6667 -2.6097 -1.9491 44 1 5.6870 -4.3135 -3.6792 45 1 6.8635 -6.2572 -4.6285 46 1 8.4080 -7.5665 -3.2274 47 1 8.7674 -6.9390 -0.8736 48 1 7.5978 -4.9900 0.0733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:39 Heat of formation + Delta-G solvation = -43.069889 kcal Electronic energy + Delta-G solvation = -24542.450374 eV Core-core repulsion = 21175.033717 eV Total energy + Delta-G solvation = -3367.416657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.50452 -39.07833 -36.39658 -34.82208 -33.48916 -32.27622 -31.15263 -30.96939 -28.16641 -26.82623 -26.55816 -25.31255 -23.28303 -22.65658 -21.76833 -20.72295 -20.16570 -18.22969 -16.89370 -16.51399 -16.07141 -15.71801 -15.57259 -15.14978 -14.82555 -14.49169 -14.14684 -13.94157 -13.49995 -13.39979 -13.26779 -13.04042 -12.79082 -12.34983 -12.16980 -12.05868 -11.97563 -11.66863 -11.59503 -11.34723 -11.23382 -11.11961 -10.97182 -10.89522 -10.82275 -10.67181 -10.57279 -10.35267 -10.22274 -10.08586 -9.56304 -9.00449 -8.84603 -8.70856 -8.38881 -7.56837 -6.01007 -4.05244 1.27892 1.31692 3.33215 3.37687 3.40154 3.52428 3.68816 4.01314 4.47311 4.69585 4.74599 4.90389 5.01078 5.02741 5.11604 5.12950 5.19726 5.32811 5.34680 5.36831 5.44636 5.45710 5.61588 5.67338 5.73459 5.77767 5.83225 5.88867 5.91114 5.95883 6.01251 6.11686 6.19423 6.20127 6.28919 6.32817 6.38062 6.41965 6.52542 6.58993 6.60382 6.71584 6.93075 7.15695 7.49404 7.62118 7.96040 8.28859 8.50707 8.94594 9.18205 9.59625 11.06837 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.003373 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.574653 B = 8298.100014 C = 9850.089383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.503 3.497 16 O -0.543 6.543 17 C -0.140 4.140 18 C -0.096 4.096 19 C -0.082 4.082 20 C -0.074 4.074 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.423 4.750 -11.981 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.123 3.877 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.289 3.711 16 O -0.421 6.421 17 C -0.180 4.180 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.135 4.135 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.023 4.074 -11.943 20.396 hybrid contribution 0.025 -0.229 1.084 1.108 sum 16.048 3.846 -10.859 19.754 Atomic orbital electron populations 1.21929 0.94681 1.03077 1.00913 1.21584 0.97063 0.95742 0.98936 1.21783 1.00511 0.96077 1.01744 1.21521 0.99013 0.82473 0.97827 1.48217 1.21830 1.06293 1.56429 1.19367 0.78867 0.96272 0.93150 1.21428 0.94983 1.44368 0.95661 0.92656 1.24921 0.95078 0.95465 0.98622 1.69923 0.99818 1.47074 1.36646 0.86589 0.77339 0.78948 0.84722 1.20298 1.21206 1.20223 1.20382 0.85667 0.86118 0.78888 1.90665 1.75246 1.17587 1.58600 1.21738 0.95625 0.99510 1.01164 1.21290 0.93930 0.97241 1.00958 1.20687 0.96216 0.94776 1.00280 1.19957 0.96435 0.97190 0.93864 1.21081 0.99767 0.97611 0.95118 1.21133 0.97123 0.95743 0.99801 1.21114 0.99280 0.99996 0.94420 1.21141 0.99911 0.97195 0.95506 1.21097 0.97042 0.95678 0.99717 0.93689 0.91262 0.92541 0.91612 0.92926 0.92892 0.92525 0.90120 0.91705 0.94266 0.94203 0.92735 0.89672 0.89753 0.91206 0.91083 0.90986 0.91018 0.86094 0.86267 0.86394 0.86245 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.18 37.16 0.30 -1.96 16 2 C -0.11 -1.54 3.12 -90.62 -0.28 -1.82 16 3 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 4 C 0.12 1.85 4.70 -4.04 -0.02 1.83 16 5 N -0.60 -12.44 2.28 -175.06 -0.40 -12.84 16 6 C 0.24 6.29 4.23 -5.19 -0.02 6.27 16 7 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.50 10.39 7.67 -10.98 -0.08 10.31 16 16 O -0.54 -13.83 15.56 5.56 0.09 -13.74 16 17 C -0.14 -2.02 4.25 -27.88 -0.12 -2.14 16 18 C -0.10 -1.34 4.49 -26.74 -0.12 -1.46 16 19 C -0.08 -0.87 5.34 -27.88 -0.15 -1.02 16 20 C -0.07 -0.85 5.13 -104.62 -0.54 -1.39 16 21 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 23 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.27 5.89 -51.93 -0.31 0.96 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.88 7.30 -51.93 -0.38 0.50 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 35 H 0.04 1.02 5.98 -51.93 -0.31 0.70 16 36 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 39 H 0.08 1.02 7.26 -51.93 -0.38 0.65 16 40 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.07 1.13 8.10 -51.93 -0.42 0.70 16 42 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 44 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -33.27 387.95 -10.17 -43.44 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.35 Total: 0.72 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.07 Total: -14.45 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.34 Total: -38.85 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.27 -10.17 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.369 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds