Wall clock time and date at job start Tue Mar 31 2020 09:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47189 * 2 1 4 4 C 1.52996 * 109.47071 * 120.00332 * 2 1 3 5 5 N 1.46501 * 109.47073 * 65.00302 * 4 2 1 6 6 C 1.46500 * 119.99540 * 269.99619 * 5 4 2 7 7 C 1.50705 * 109.47370 * 270.00046 * 6 5 4 8 8 H 1.07997 * 119.99361 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99788 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00164 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46786 * 60.00193 * 11 9 7 13 13 H 1.48499 * 109.47029 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47051 * 299.99884 * 11 9 7 15 15 C 1.34773 * 120.00546 * 89.99841 * 5 4 2 16 16 O 1.21274 * 120.00284 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99652 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.46901 * 180.02562 * 17 15 5 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 15 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.08996 * 109.46943 * 59.99255 * 1 2 3 27 27 H 1.08993 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46685 * 299.99864 * 1 2 3 29 29 H 1.08998 * 109.46956 * 240.00774 * 2 1 3 30 30 H 1.09002 * 109.47165 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47378 * 300.00552 * 3 2 1 32 32 H 1.09006 * 109.46707 * 60.00275 * 3 2 1 33 33 H 1.08999 * 109.47311 * 304.99747 * 4 2 1 34 34 H 1.09002 * 109.47146 * 184.99816 * 4 2 1 35 35 H 1.09002 * 109.47117 * 29.99735 * 6 5 4 36 36 H 1.09000 * 109.46967 * 149.99833 * 6 5 4 37 37 H 0.96998 * 119.99589 * 180.02562 * 10 9 7 38 38 H 1.08992 * 109.47447 * 60.00244 * 17 15 5 39 39 H 1.08999 * 109.46636 * 299.99870 * 17 15 5 40 40 H 1.08995 * 109.47671 * 59.99705 * 18 17 15 41 41 H 1.09004 * 109.46984 * 299.99721 * 18 17 15 42 42 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 43 43 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 44 44 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 0.3746 -2.5660 1.7611 7 6 0.5717 -2.9410 3.2074 8 1 1.5508 -2.8640 3.6565 9 6 -0.4979 -3.3824 3.9570 10 7 -1.6902 -3.4766 3.4098 11 14 -0.2535 -3.8478 5.7495 12 1 0.2508 -2.6712 6.5021 13 1 -1.5489 -4.2867 6.3280 14 1 0.7316 -4.9550 5.8435 15 6 2.4715 -3.0331 0.6113 16 8 2.1504 -4.2015 0.5623 17 6 3.7858 -2.5874 0.0238 18 6 4.5162 -3.7953 -0.5666 19 6 5.8502 -3.3428 -1.1636 20 6 6.5699 -4.5326 -1.7446 21 6 6.3640 -4.8881 -3.0645 22 6 7.0246 -5.9792 -3.5975 23 6 7.8916 -6.7143 -2.8108 24 6 8.0934 -6.3620 -1.4895 25 6 7.4363 -5.2682 -0.9577 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2951 35 1 -0.3483 -1.7532 1.6918 36 1 0.0043 -3.4298 1.2090 37 1 -2.4428 -3.7868 3.9374 38 1 4.3990 -2.1376 0.8045 39 1 3.6026 -1.8544 -0.7619 40 1 3.9029 -4.2448 -1.3475 41 1 4.6993 -4.5286 0.2188 42 1 6.4638 -2.8930 -0.3830 43 1 5.6667 -2.6097 -1.9491 44 1 5.6870 -4.3135 -3.6792 45 1 6.8635 -6.2572 -4.6285 46 1 8.4080 -7.5665 -3.2274 47 1 8.7674 -6.9390 -0.8736 48 1 7.5978 -4.9900 0.0733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:38 Heat of formation + Delta-G solvation = -60.336235 kcal Electronic energy + Delta-G solvation = -24543.199099 eV Core-core repulsion = 21175.033717 eV Total energy + Delta-G solvation = -3368.165382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.87956 -40.07886 -37.81939 -35.91968 -35.27116 -34.09087 -32.22903 -31.72390 -29.88889 -27.95538 -27.75672 -26.78785 -24.93629 -23.42020 -23.10606 -21.63543 -21.33357 -19.76438 -18.66329 -17.84996 -17.44715 -17.19548 -16.78749 -16.31001 -16.01539 -15.90518 -15.49890 -15.19878 -14.55334 -14.42862 -14.31385 -14.22656 -14.09944 -13.78370 -13.55860 -13.46307 -13.08854 -12.96430 -12.84412 -12.77196 -12.64701 -12.55217 -12.35133 -12.13714 -12.07278 -11.94616 -11.81528 -11.70043 -11.57993 -11.48550 -11.42300 -10.62135 -10.52268 -9.78017 -9.54497 -9.34073 -8.21393 -6.36269 0.49335 0.54051 1.34563 1.39105 1.46268 1.90974 2.32700 2.49485 2.92324 3.07367 3.74548 3.82414 3.96506 3.97545 4.07484 4.18083 4.19440 4.27860 4.28784 4.37329 4.55421 4.59695 4.67338 4.69826 4.72139 4.77229 4.82744 4.85530 4.91010 4.96260 5.07811 5.10263 5.14864 5.17117 5.22597 5.25993 5.27243 5.32757 5.43827 5.47809 5.53212 5.61675 5.62024 5.65956 5.79305 5.91620 6.10240 6.18230 6.72009 6.87104 7.29731 7.56123 8.84886 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.003373 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.574653 B = 8298.100014 C = 9850.089383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.261 3.739 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.489 3.511 16 O -0.605 6.605 17 C -0.124 4.124 18 C -0.089 4.089 19 C -0.070 4.070 20 C -0.093 4.093 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.034 0.966 36 H -0.013 1.013 37 H 0.266 0.734 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.994 6.665 -12.197 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.330 5.330 6 C 0.140 3.860 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.192 4.192 10 N -0.569 5.569 11 Si 0.790 3.210 12 H -0.183 1.183 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.279 3.721 16 O -0.487 6.487 17 C -0.163 4.163 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.093 4.093 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.152 4.152 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.005 0.995 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.621 6.048 -12.168 23.052 hybrid contribution -0.811 -0.868 1.094 1.615 sum 17.810 5.180 -11.074 21.602 Atomic orbital electron populations 1.21906 0.96587 1.00489 1.01610 1.21535 0.95369 0.97884 0.97767 1.21728 1.01974 0.93237 1.02381 1.21866 1.01280 0.79414 0.98681 1.48237 1.20133 1.08761 1.55884 1.18783 0.81476 0.94050 0.91722 1.21750 0.94908 1.44725 0.96915 0.93025 1.25854 0.94715 0.95183 1.03455 1.70053 1.00666 1.47687 1.38474 0.85505 0.77450 0.78960 0.79130 1.18328 1.20337 1.20458 1.21602 0.87341 0.85200 0.77957 1.90631 1.76865 1.20340 1.60881 1.21743 0.91733 1.00289 1.02528 1.21188 0.95545 0.96483 0.99531 1.20599 0.94052 0.94924 1.01142 1.20146 0.97007 0.97853 0.94322 1.21346 1.00164 0.98196 0.95320 1.21460 0.96896 0.95517 1.00903 1.21456 0.99159 1.00519 0.94378 1.21449 1.00126 0.97198 0.96105 1.21341 0.97469 0.96212 1.00224 0.91479 0.95423 0.93364 0.90804 0.90522 0.91558 0.92674 0.91508 0.87878 0.94830 0.99506 0.92491 0.86760 0.86301 0.93395 0.93865 0.89321 0.88947 0.85067 0.84375 0.84296 0.84560 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 8.18 71.98 0.59 -3.94 16 2 C -0.11 -2.64 3.12 -10.79 -0.03 -2.67 16 3 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 4 C 0.11 3.34 4.70 86.38 0.41 3.74 16 5 N -0.60 -25.54 2.28 -826.15 -1.88 -27.42 16 6 C 0.26 14.35 4.23 85.63 0.36 14.71 16 7 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.01 0.39 5.46 84.65 0.46 0.86 16 10 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 11 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 C 0.49 20.58 7.67 87.66 0.67 21.25 16 16 O -0.61 -32.61 15.56 -3.01 -0.05 -32.65 16 17 C -0.12 -3.28 4.25 29.85 0.13 -3.16 16 18 C -0.09 -2.42 4.49 30.59 0.14 -2.29 16 19 C -0.07 -1.32 5.34 29.85 0.16 -1.16 16 20 C -0.09 -2.01 5.13 -19.86 -0.10 -2.12 16 21 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 23 C -0.14 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.13 -2.86 9.70 22.27 0.22 -2.64 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 1.05 5.89 -2.39 -0.01 1.03 16 28 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.07 1.75 7.30 -2.39 -0.02 1.73 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 34 H 0.10 2.35 6.44 -2.39 -0.02 2.33 16 35 H 0.03 1.86 5.98 -2.39 -0.01 1.85 16 36 H -0.01 -0.85 7.42 -2.39 -0.02 -0.87 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.11 2.44 7.40 -2.39 -0.02 2.42 16 39 H 0.12 2.40 7.26 -2.39 -0.02 2.38 16 40 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.04 1.39 8.10 -2.38 -0.02 1.38 16 42 H 0.09 1.39 8.09 -2.38 -0.02 1.37 16 43 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 47 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 48 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -78.25 387.95 6.07 -72.19 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.90 Total: 17.47 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 4.79 Total: -20.28 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.60 Total: -84.57 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.65 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -78.25 6.07 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.850 kcal (2) G-P(sol) polarization free energy of solvation -78.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds