Wall clock time and date at job start Tue Mar 31 2020 09:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46780 * 2 1 4 4 C 1.52997 * 109.47559 * 119.99767 * 2 1 3 5 5 N 1.46490 * 109.47386 * 174.45944 * 4 2 1 6 6 C 1.46499 * 120.00265 * 275.73663 * 5 4 2 7 7 C 1.50701 * 109.46966 * 278.67286 * 6 5 4 8 8 H 1.07999 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00013 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99794 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00040 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47187 * 59.99541 * 11 9 7 13 13 H 1.48494 * 109.47027 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47283 * 299.99757 * 11 9 7 15 15 C 1.34775 * 119.99928 * 95.73444 * 5 4 2 16 16 O 1.21555 * 120.00293 * 6.32655 * 15 5 4 17 17 C 1.47852 * 119.99939 * 186.33252 * 15 5 4 18 18 C 1.39581 * 120.14130 * 150.58870 * 17 15 5 19 19 C 1.37958 * 119.84589 * 180.02562 * 18 17 15 20 20 C 1.38356 * 120.15010 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.85518 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47053 * 239.99604 * 21 20 19 23 23 C 1.52998 * 109.47717 * 119.99486 * 21 20 19 24 24 C 1.38356 * 120.29325 * 0.23117 * 20 19 18 25 25 C 1.37963 * 120.14252 * 359.48867 * 24 20 19 26 26 H 1.09002 * 109.47388 * 299.99959 * 1 2 3 27 27 H 1.08998 * 109.47836 * 59.99913 * 1 2 3 28 28 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47100 * 240.00218 * 2 1 3 30 30 H 1.08996 * 109.47232 * 65.41745 * 3 2 1 31 31 H 1.09003 * 109.47222 * 185.42071 * 3 2 1 32 32 H 1.09004 * 109.47088 * 305.42180 * 3 2 1 33 33 H 1.09003 * 109.46784 * 54.45971 * 4 2 1 34 34 H 1.09003 * 109.47142 * 294.46854 * 4 2 1 35 35 H 1.09001 * 109.47175 * 38.67087 * 6 5 4 36 36 H 1.09006 * 109.47594 * 158.67071 * 6 5 4 37 37 H 0.97000 * 119.99857 * 180.02562 * 10 9 7 38 38 H 1.07995 * 120.07760 * 359.97438 * 18 17 15 39 39 H 1.08005 * 119.92347 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47220 * 359.97438 * 21 20 19 41 41 H 1.08996 * 109.46901 * 299.99759 * 22 21 20 42 42 H 1.09008 * 109.46585 * 60.00046 * 22 21 20 43 43 H 1.08997 * 109.47382 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.46717 * 59.99763 * 23 21 20 45 45 H 1.08997 * 109.47398 * 179.97438 * 23 21 20 46 46 H 1.08998 * 109.47295 * 300.00572 * 23 21 20 47 47 H 1.07993 * 119.93309 * 179.74712 * 24 20 19 48 48 H 1.08004 * 120.07600 * 180.25079 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4989 -0.8377 1.1844 6 6 4.1133 -1.9446 0.4472 7 6 4.1188 -3.1806 1.3093 8 1 3.7063 -3.1451 2.3068 9 6 4.6514 -4.3566 0.8251 10 7 5.1542 -4.3997 -0.3894 11 14 4.6589 -5.8885 1.8941 12 1 3.2636 -6.2478 2.2539 13 1 5.2815 -7.0105 1.1468 14 1 5.4368 -5.6250 3.1312 15 6 4.2758 0.0734 1.8029 16 8 3.7705 0.9242 2.5089 17 6 5.7429 0.0383 1.6227 18 6 6.4870 1.2167 1.6999 19 6 7.8555 1.1769 1.5303 20 6 8.4905 -0.0273 1.2835 21 6 9.9856 -0.0630 1.0986 22 6 10.3148 -0.6154 -0.2897 23 6 10.6104 -0.9628 2.1668 24 6 7.7581 -1.1982 1.2004 25 6 6.3897 -1.1733 1.3739 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7579 1.9276 0.9345 31 1 3.1256 1.4442 -0.0971 32 1 1.5994 1.9836 -0.8375 33 1 1.5980 -1.7162 1.3002 34 1 1.7599 -0.1533 2.1365 35 1 3.5422 -2.1376 -0.4610 36 1 5.1376 -1.6812 0.1831 37 1 5.5286 -5.2271 -0.7302 38 1 5.9925 2.1575 1.8913 39 1 8.4325 2.0881 1.5894 40 1 10.3875 0.9459 1.1926 41 1 9.9129 -1.6242 -0.3840 42 1 9.8697 0.0258 -1.0507 43 1 11.3962 -0.6408 -0.4236 44 1 10.2084 -1.9716 2.0725 45 1 11.6918 -0.9889 2.0328 46 1 10.3758 -0.5693 3.1559 47 1 8.2592 -2.1344 1.0035 48 1 5.8196 -2.0886 1.3128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:34 Heat of formation + Delta-G solvation = -17.859437 kcal Electronic energy + Delta-G solvation = -25807.751363 eV Core-core repulsion = 22441.427913 eV Total energy + Delta-G solvation = -3366.323450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92829 -38.37190 -35.95446 -35.16075 -34.14247 -32.39925 -30.46044 -29.59083 -27.61141 -27.04163 -26.78665 -25.85840 -23.49128 -22.87439 -21.99065 -20.28324 -19.56495 -18.76981 -16.71896 -16.49653 -16.07629 -15.33231 -14.87325 -14.61568 -14.47460 -14.21530 -13.80785 -13.58356 -13.51641 -13.36845 -13.01712 -12.90251 -12.43080 -12.38295 -12.20569 -12.08806 -11.90816 -11.70355 -11.48428 -11.30073 -11.08109 -11.01023 -10.96233 -10.83929 -10.72155 -10.58507 -10.49223 -10.31987 -10.10648 -9.83407 -9.64292 -9.00230 -8.72528 -8.30007 -8.04699 -7.66189 -6.29890 -4.39403 1.51526 1.98103 3.18719 3.23856 3.27039 3.54181 3.94259 4.23732 4.44747 4.84436 4.97453 5.01239 5.26892 5.30829 5.31986 5.37023 5.50764 5.53568 5.54433 5.59562 5.70461 5.88039 5.91467 5.93758 5.96402 6.01501 6.05707 6.07838 6.17590 6.18239 6.31099 6.33049 6.37131 6.40344 6.43306 6.49420 6.65752 6.65943 6.73402 6.81069 6.92664 7.09409 7.17461 7.19515 7.50648 7.59581 7.66105 7.92716 8.35468 8.70577 9.03262 9.28979 10.74190 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009812 B = 0.006133 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.877624 B = 4564.548642 C = 6690.376380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.136 4.136 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.206 3.794 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.069 3.931 10 N -0.881 5.881 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.558 3.442 16 O -0.571 6.571 17 C -0.139 4.139 18 C -0.069 4.069 19 C -0.146 4.146 20 C -0.064 4.064 21 C -0.056 4.056 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.129 4.129 25 C -0.093 4.093 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.269 0.731 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.121 0.879 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 6.842 -0.477 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.194 4.194 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.087 3.913 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.135 4.135 10 N -0.518 5.518 11 Si 0.722 3.278 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.348 3.652 16 O -0.453 6.453 17 C -0.142 4.142 18 C -0.088 4.088 19 C -0.164 4.164 20 C -0.064 4.064 21 C -0.074 4.074 22 C -0.202 4.202 23 C -0.201 4.201 24 C -0.147 4.147 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.139 0.861 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.251 7.122 -0.277 8.299 hybrid contribution 0.050 -0.982 0.381 1.055 sum 4.301 6.140 0.104 7.497 Atomic orbital electron populations 1.21743 0.95223 1.01593 1.01309 1.21490 0.95297 0.96776 0.99637 1.21744 1.00947 0.95721 1.00973 1.21379 0.80713 1.00608 0.97323 1.48005 1.05658 1.26626 1.51210 1.20334 0.96005 0.83017 0.91972 1.21430 1.40882 0.94402 1.01495 0.91757 1.24981 0.94645 0.98846 0.95079 1.69925 1.38250 1.28085 1.15517 0.86578 0.78734 0.81957 0.80505 1.19966 1.20983 1.19822 1.18292 0.86549 0.80923 0.79481 1.90647 1.75495 1.39045 1.40119 1.19977 0.93525 0.94655 1.06008 1.21076 0.93469 0.97453 0.96791 1.20780 0.94154 0.97074 1.04414 1.20011 0.94881 0.93602 0.97952 1.20124 0.91565 0.99944 0.95814 1.21862 1.00729 1.01784 0.95796 1.21858 0.99827 1.00064 0.98400 1.20999 0.94105 0.97458 1.02158 1.23491 0.95240 1.01338 0.90891 0.92853 0.92989 0.92614 0.91006 0.92523 0.93129 0.93748 0.90504 0.90655 0.95015 0.91249 0.92156 0.86024 0.86561 0.90912 0.92004 0.92581 0.92780 0.92129 0.92743 0.92626 0.86113 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 2 C -0.11 -1.84 3.12 -90.62 -0.28 -2.12 16 3 C -0.14 -2.22 8.26 37.16 0.31 -1.92 16 4 C 0.12 2.33 4.97 -4.05 -0.02 2.31 16 5 N -0.59 -12.56 2.28 -176.18 -0.40 -12.96 16 6 C 0.21 4.80 4.67 -5.19 -0.02 4.77 16 7 C -0.54 -13.55 7.54 -34.44 -0.26 -13.81 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.07 1.73 5.33 -17.82 -0.10 1.64 16 10 N -0.88 -22.77 13.29 55.43 0.74 -22.03 16 11 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 15 C 0.56 12.27 6.12 -12.33 -0.08 12.19 16 16 O -0.57 -13.29 15.69 5.32 0.08 -13.20 16 17 C -0.14 -2.86 5.60 -104.96 -0.59 -3.44 16 18 C -0.07 -1.24 9.60 -39.18 -0.38 -1.62 16 19 C -0.15 -2.29 9.65 -39.64 -0.38 -2.67 16 20 C -0.06 -1.00 4.79 -104.54 -0.50 -1.50 16 21 C -0.06 -0.69 3.09 -91.77 -0.28 -0.98 16 22 C -0.14 -1.70 9.00 37.16 0.33 -1.36 16 23 C -0.14 -1.66 9.01 37.16 0.33 -1.33 16 24 C -0.13 -2.33 8.69 -39.64 -0.34 -2.67 16 25 C -0.09 -1.92 7.50 -39.18 -0.29 -2.21 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.25 7.97 -51.93 -0.41 0.83 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.92 7.02 -51.93 -0.36 0.55 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 34 H 0.08 1.45 7.19 -51.93 -0.37 1.08 16 35 H 0.03 0.78 7.96 -51.93 -0.41 0.37 16 36 H 0.07 1.67 3.99 -52.28 -0.21 1.46 16 37 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.12 2.09 7.92 -52.49 -0.42 1.67 16 39 H 0.12 1.49 7.94 -52.48 -0.42 1.07 16 40 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 41 H 0.06 0.78 7.36 -51.93 -0.38 0.40 16 42 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.74 7.39 -51.93 -0.38 0.36 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.12 2.08 7.08 -52.49 -0.37 1.71 16 48 H 0.20 4.67 3.03 -52.48 -0.16 4.51 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -26.80 378.45 -9.19 -35.99 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.08 Total: 8.04 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -2.21 Total: -16.26 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.33 Total: -34.99 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.80 -9.19 -35.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.128 kcal (2) G-P(sol) polarization free energy of solvation -26.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds