Wall clock time and date at job start Tue Mar 31 2020 09:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46780 * 2 1 4 4 C 1.52997 * 109.47559 * 119.99767 * 2 1 3 5 5 N 1.46490 * 109.47386 * 174.45944 * 4 2 1 6 6 C 1.46499 * 120.00265 * 275.73663 * 5 4 2 7 7 C 1.50701 * 109.46966 * 278.67286 * 6 5 4 8 8 H 1.07999 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00013 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99794 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00040 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47187 * 59.99541 * 11 9 7 13 13 H 1.48494 * 109.47027 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47283 * 299.99757 * 11 9 7 15 15 C 1.34775 * 119.99928 * 95.73444 * 5 4 2 16 16 O 1.21555 * 120.00293 * 6.32655 * 15 5 4 17 17 C 1.47852 * 119.99939 * 186.33252 * 15 5 4 18 18 C 1.39581 * 120.14130 * 150.58870 * 17 15 5 19 19 C 1.37958 * 119.84589 * 180.02562 * 18 17 15 20 20 C 1.38356 * 120.15010 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.85518 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47053 * 239.99604 * 21 20 19 23 23 C 1.52998 * 109.47717 * 119.99486 * 21 20 19 24 24 C 1.38356 * 120.29325 * 0.23117 * 20 19 18 25 25 C 1.37963 * 120.14252 * 359.48867 * 24 20 19 26 26 H 1.09002 * 109.47388 * 299.99959 * 1 2 3 27 27 H 1.08998 * 109.47836 * 59.99913 * 1 2 3 28 28 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47100 * 240.00218 * 2 1 3 30 30 H 1.08996 * 109.47232 * 65.41745 * 3 2 1 31 31 H 1.09003 * 109.47222 * 185.42071 * 3 2 1 32 32 H 1.09004 * 109.47088 * 305.42180 * 3 2 1 33 33 H 1.09003 * 109.46784 * 54.45971 * 4 2 1 34 34 H 1.09003 * 109.47142 * 294.46854 * 4 2 1 35 35 H 1.09001 * 109.47175 * 38.67087 * 6 5 4 36 36 H 1.09006 * 109.47594 * 158.67071 * 6 5 4 37 37 H 0.97000 * 119.99857 * 180.02562 * 10 9 7 38 38 H 1.07995 * 120.07760 * 359.97438 * 18 17 15 39 39 H 1.08005 * 119.92347 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47220 * 359.97438 * 21 20 19 41 41 H 1.08996 * 109.46901 * 299.99759 * 22 21 20 42 42 H 1.09008 * 109.46585 * 60.00046 * 22 21 20 43 43 H 1.08997 * 109.47382 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.46717 * 59.99763 * 23 21 20 45 45 H 1.08997 * 109.47398 * 179.97438 * 23 21 20 46 46 H 1.08998 * 109.47295 * 300.00572 * 23 21 20 47 47 H 1.07993 * 119.93309 * 179.74712 * 24 20 19 48 48 H 1.08004 * 120.07600 * 180.25079 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4989 -0.8377 1.1844 6 6 4.1133 -1.9446 0.4472 7 6 4.1188 -3.1806 1.3093 8 1 3.7063 -3.1451 2.3068 9 6 4.6514 -4.3566 0.8251 10 7 5.1542 -4.3997 -0.3894 11 14 4.6589 -5.8885 1.8941 12 1 3.2636 -6.2478 2.2539 13 1 5.2815 -7.0105 1.1468 14 1 5.4368 -5.6250 3.1312 15 6 4.2758 0.0734 1.8029 16 8 3.7705 0.9242 2.5089 17 6 5.7429 0.0383 1.6227 18 6 6.4870 1.2167 1.6999 19 6 7.8555 1.1769 1.5303 20 6 8.4905 -0.0273 1.2835 21 6 9.9856 -0.0630 1.0986 22 6 10.3148 -0.6154 -0.2897 23 6 10.6104 -0.9628 2.1668 24 6 7.7581 -1.1982 1.2004 25 6 6.3897 -1.1733 1.3739 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.7579 1.9276 0.9345 31 1 3.1256 1.4442 -0.0971 32 1 1.5994 1.9836 -0.8375 33 1 1.5980 -1.7162 1.3002 34 1 1.7599 -0.1533 2.1365 35 1 3.5422 -2.1376 -0.4610 36 1 5.1376 -1.6812 0.1831 37 1 5.5286 -5.2271 -0.7302 38 1 5.9925 2.1575 1.8913 39 1 8.4325 2.0881 1.5894 40 1 10.3875 0.9459 1.1926 41 1 9.9129 -1.6242 -0.3840 42 1 9.8697 0.0258 -1.0507 43 1 11.3962 -0.6408 -0.4236 44 1 10.2084 -1.9716 2.0725 45 1 11.6918 -0.9889 2.0328 46 1 10.3758 -0.5693 3.1559 47 1 8.2592 -2.1344 1.0035 48 1 5.8196 -2.0886 1.3128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:33 Heat of formation + Delta-G solvation = -28.604669 kcal Electronic energy + Delta-G solvation = -25808.217312 eV Core-core repulsion = 22441.427913 eV Total energy + Delta-G solvation = -3366.789398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51203 -39.79848 -37.53200 -36.53802 -35.60336 -34.22790 -31.89806 -30.94423 -29.45344 -28.06381 -27.94505 -27.32737 -25.21139 -24.35367 -23.45668 -21.58295 -20.83171 -20.37056 -18.61695 -18.13451 -17.64949 -16.75170 -16.42213 -16.34241 -15.87716 -15.59233 -15.29370 -14.88542 -14.81251 -14.56014 -14.38248 -14.35109 -14.14986 -13.70712 -13.65929 -13.25651 -13.12109 -13.01008 -12.86917 -12.83328 -12.71511 -12.50740 -12.30843 -12.17288 -11.99534 -11.88017 -11.84294 -11.68439 -11.62852 -11.56546 -11.22671 -10.76288 -10.56519 -9.75498 -9.55367 -9.36877 -8.24115 -6.40033 0.05400 0.55310 1.40732 1.42146 1.49373 1.91973 2.27427 2.42511 2.94043 3.04744 3.66522 3.81038 3.91696 3.96616 4.03947 4.16615 4.18914 4.28050 4.35673 4.55553 4.57558 4.62394 4.64897 4.71084 4.76855 4.84674 4.86275 4.91013 4.97847 4.98073 5.02971 5.03454 5.09836 5.17233 5.17802 5.22040 5.24438 5.37246 5.38999 5.42313 5.42884 5.57123 5.61495 5.64126 5.77935 5.84411 5.98838 6.12470 6.54031 6.77332 7.24901 7.36595 8.79376 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009812 B = 0.006133 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.877624 B = 4564.548642 C = 6690.376380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.128 4.128 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.222 3.778 7 C -0.551 4.551 8 H 0.050 0.950 9 C 0.034 3.966 10 N -0.904 5.904 11 Si 0.950 3.050 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.273 1.273 15 C 0.553 3.447 16 O -0.591 6.591 17 C -0.165 4.165 18 C -0.073 4.073 19 C -0.135 4.135 20 C -0.052 4.052 21 C -0.054 4.054 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.136 4.136 25 C -0.115 4.115 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.011 0.989 36 H 0.066 0.934 37 H 0.271 0.729 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.122 0.878 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 7.827 -0.506 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.317 5.317 6 C 0.102 3.898 7 C -0.589 4.589 8 H 0.068 0.932 9 C -0.168 4.168 10 N -0.541 5.541 11 Si 0.775 3.225 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.198 1.198 15 C 0.344 3.656 16 O -0.475 6.475 17 C -0.168 4.168 18 C -0.091 4.091 19 C -0.152 4.152 20 C -0.053 4.053 21 C -0.072 4.072 22 C -0.201 4.201 23 C -0.201 4.201 24 C -0.154 4.154 25 C -0.132 4.132 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.174 0.826 40 H 0.117 0.883 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.140 0.860 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.743 8.104 -0.311 9.937 hybrid contribution -0.346 -1.244 0.394 1.350 sum 5.397 6.860 0.083 8.729 Atomic orbital electron populations 1.21696 0.92399 1.02344 1.02704 1.21442 0.97580 0.96272 0.97409 1.21662 0.99371 0.95805 1.01712 1.21534 0.79551 1.00615 0.98651 1.48033 1.06673 1.26137 1.50842 1.20035 0.95530 0.83170 0.91051 1.21471 1.41018 0.95397 1.01002 0.93152 1.25562 0.94184 1.01048 0.96031 1.69998 1.38758 1.28776 1.16615 0.85728 0.78629 0.79101 0.79053 1.19833 1.20160 1.19789 1.18611 0.87421 0.80562 0.79048 1.90609 1.76084 1.39766 1.41022 1.20003 0.92832 0.95748 1.08247 1.21264 0.94606 0.96687 0.96591 1.21207 0.93267 0.98582 1.02173 1.20409 0.96885 0.92510 0.95454 1.20236 0.88847 1.01732 0.96389 1.21861 1.02316 1.00692 0.95239 1.21860 1.01282 0.99004 0.97954 1.21064 0.93167 0.98816 1.02330 1.23181 0.96465 1.00398 0.93171 0.92046 0.90964 0.92246 0.92310 0.93135 0.95663 0.91114 0.91089 0.91133 0.97052 0.91677 0.91935 0.85374 0.82565 0.88323 0.93592 0.92896 0.90278 0.93503 0.90289 0.92780 0.85992 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.19 71.98 0.66 -2.75 16 2 C -0.11 -3.56 3.12 -10.79 -0.03 -3.59 16 3 C -0.13 -4.18 8.26 71.98 0.59 -3.58 16 4 C 0.12 4.70 4.97 86.38 0.43 5.13 16 5 N -0.59 -26.51 2.28 -829.58 -1.89 -28.40 16 6 C 0.22 10.92 4.67 85.63 0.40 11.32 16 7 C -0.55 -28.60 7.54 25.60 0.19 -28.41 16 8 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 9 C 0.03 1.76 5.33 84.66 0.45 2.21 16 10 N -0.90 -47.84 13.29 21.45 0.28 -47.56 16 11 Si 0.95 41.01 29.54 68.60 2.03 43.04 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.55 25.33 6.12 86.79 0.53 25.86 16 16 O -0.59 -28.35 15.69 -3.89 -0.06 -28.42 16 17 C -0.17 -7.01 5.60 -20.09 -0.11 -7.13 16 18 C -0.07 -2.57 9.60 22.53 0.22 -2.36 16 19 C -0.13 -3.88 9.65 22.23 0.21 -3.67 16 20 C -0.05 -1.54 4.79 -19.81 -0.09 -1.63 16 21 C -0.05 -1.16 3.09 -11.54 -0.04 -1.19 16 22 C -0.14 -3.00 9.00 71.98 0.65 -2.35 16 23 C -0.14 -2.91 9.01 71.98 0.65 -2.26 16 24 C -0.14 -4.92 8.69 22.23 0.19 -4.73 16 25 C -0.11 -4.94 7.50 22.53 0.17 -4.77 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 2.10 7.97 -2.39 -0.02 2.08 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.02 0.92 7.02 -2.39 -0.02 0.90 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.07 2.82 8.11 -2.39 -0.02 2.80 16 34 H 0.07 2.82 7.19 -2.39 -0.02 2.81 16 35 H 0.01 0.60 7.96 -2.39 -0.02 0.58 16 36 H 0.07 3.32 3.99 -2.71 -0.01 3.31 16 37 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 38 H 0.13 4.31 7.92 -2.91 -0.02 4.29 16 39 H 0.16 3.28 7.94 -2.91 -0.02 3.25 16 40 H 0.10 1.69 7.87 -2.39 -0.02 1.67 16 41 H 0.04 1.10 7.36 -2.39 -0.02 1.08 16 42 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 1.07 7.39 -2.39 -0.02 1.05 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.12 4.29 7.08 -2.91 -0.02 4.27 16 48 H 0.17 8.48 3.03 -2.91 -0.01 8.47 16 Total: -1.00 -59.64 378.45 6.35 -53.29 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.92 Total: 31.95 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 5.07 Total: -23.90 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.61 Total: -75.96 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.42 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -59.64 6.35 -53.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.683 kcal (2) G-P(sol) polarization free energy of solvation -59.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds