Wall clock time and date at job start Tue Mar 31 2020 09:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47458 * 2 1 4 4 C 1.52999 * 109.47458 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47296 * 185.65705 * 4 3 2 6 6 C 1.46506 * 119.99573 * 285.24042 * 5 4 3 7 7 C 1.52994 * 109.47555 * 269.72483 * 6 5 4 8 8 C 1.52998 * 109.47343 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47025 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00121 * 104.97254 * 5 4 3 11 11 O 1.21593 * 119.99953 * 177.54002 * 10 5 4 12 12 C 1.47636 * 119.99991 * 357.53640 * 10 5 4 13 13 C 1.40018 * 119.89462 * 320.17612 * 12 10 5 14 14 C 1.36321 * 120.10226 * 179.76018 * 13 12 10 15 15 C 1.40887 * 119.89384 * 0.51786 * 14 13 12 16 16 C 1.41108 * 120.10503 * 179.71816 * 15 14 13 17 17 H 1.07998 * 119.99911 * 208.37791 * 16 15 14 18 18 C 1.40227 * 119.99848 * 28.36681 * 16 15 14 19 19 N 1.30647 * 120.00106 * 9.33308 * 18 16 15 20 20 Si 1.86800 * 119.99937 * 189.32628 * 18 16 15 21 21 H 1.48500 * 109.47001 * 60.00757 * 20 18 16 22 22 H 1.48506 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47488 * 300.00269 * 20 18 16 24 24 C 1.40886 * 119.79527 * 359.74086 * 15 14 13 25 25 C 1.36319 * 119.89237 * 359.97438 * 24 15 14 26 26 H 1.09004 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46878 * 299.99582 * 1 2 3 28 28 H 1.09003 * 109.47133 * 59.99156 * 1 2 3 29 29 H 1.09002 * 109.46878 * 240.00417 * 2 1 3 30 30 H 1.08996 * 109.47381 * 120.00595 * 2 1 3 31 31 H 1.09002 * 109.46735 * 60.00330 * 3 2 1 32 32 H 1.08996 * 109.47310 * 300.00639 * 3 2 1 33 33 H 1.09004 * 109.46584 * 65.65499 * 4 3 2 34 34 H 1.09003 * 109.46967 * 305.65766 * 4 3 2 35 35 H 1.08996 * 109.47104 * 29.73359 * 6 5 4 36 36 H 1.09006 * 109.46783 * 149.72700 * 6 5 4 37 37 H 1.09005 * 109.47421 * 300.00481 * 7 6 5 38 38 H 1.09006 * 109.46898 * 60.00288 * 7 6 5 39 39 H 1.09001 * 109.47050 * 299.99927 * 8 7 6 40 40 H 1.08988 * 109.47121 * 60.00150 * 8 7 6 41 41 H 1.09000 * 109.47833 * 60.00107 * 9 8 7 42 42 H 1.09001 * 109.47134 * 179.97438 * 9 8 7 43 43 H 1.09001 * 109.46697 * 299.99591 * 9 8 7 44 44 H 1.07999 * 119.94497 * 0.02632 * 13 12 10 45 45 H 1.07998 * 120.05175 * 180.23120 * 14 13 12 46 46 H 0.96993 * 120.00193 * 179.97438 * 19 18 16 47 47 H 1.08001 * 120.05787 * 179.97438 * 24 15 14 48 48 H 1.07997 * 119.95257 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8169 0.1355 6 6 3.9877 3.7355 -1.0036 7 6 5.2778 3.6361 -1.8199 8 6 5.2041 4.5960 -3.0091 9 6 6.4940 4.4961 -3.8258 10 6 4.5679 3.2377 1.3101 11 8 5.0143 4.3643 1.4104 12 6 4.5839 2.3310 2.4751 13 6 3.4886 1.4948 2.7237 14 6 3.5010 0.6524 3.7953 15 6 4.6135 0.6318 4.6595 16 6 4.6284 -0.2342 5.7735 17 1 5.1927 0.0303 6.6556 18 6 3.9104 -1.4381 5.7353 19 7 3.3794 -1.8467 4.6138 20 14 3.7133 -2.4577 7.2881 21 1 3.0123 -1.6546 8.3219 22 1 2.9191 -3.6750 6.9834 23 1 5.0522 -2.8544 7.7931 24 6 5.7108 1.4789 4.4083 25 6 5.6920 2.3138 3.3309 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9329 1.0189 -0.9372 34 1 3.9337 0.8432 0.8341 35 1 3.1382 3.4696 -1.6326 36 1 3.8654 4.7559 -0.6402 37 1 6.1273 3.9021 -1.1909 38 1 5.4001 2.6157 -2.1833 39 1 4.3546 4.3304 -3.6383 40 1 5.0820 5.6162 -2.6455 41 1 6.6158 3.4758 -4.1895 42 1 6.4413 5.1796 -4.6733 43 1 7.3437 4.7615 -3.1968 44 1 2.6346 1.5143 2.0629 45 1 2.6573 0.0051 3.9842 46 1 2.8830 -2.6796 4.5873 47 1 6.5657 1.4669 5.0683 48 1 6.5325 2.9638 3.1377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:11 Heat of formation + Delta-G solvation = -44.986732 kcal Electronic energy + Delta-G solvation = -25191.459235 eV Core-core repulsion = 21823.959457 eV Total energy + Delta-G solvation = -3367.499778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.66085 -37.24209 -36.26479 -35.31224 -33.77093 -33.44665 -30.57170 -29.50879 -29.16301 -28.08281 -25.87164 -23.81115 -23.33786 -21.42322 -21.20436 -21.02061 -20.65924 -18.56250 -17.52424 -16.55652 -16.13004 -15.30266 -15.20028 -15.12890 -14.80647 -14.07322 -13.76756 -13.66914 -13.48467 -13.06360 -12.92994 -12.84073 -12.65227 -12.55662 -12.17910 -11.87975 -11.80594 -11.54038 -11.27737 -11.23500 -11.19871 -11.15240 -11.08559 -11.04401 -10.91201 -10.78588 -10.58599 -10.45512 -10.30508 -9.99963 -9.42994 -9.34067 -8.91663 -8.19256 -7.62920 -7.44212 -6.90390 -4.56812 2.34632 2.97012 2.97629 3.00492 3.03466 3.53345 3.74748 3.81178 4.54993 4.91528 4.93392 5.03125 5.09118 5.13774 5.23774 5.31919 5.47164 5.55556 5.63417 5.66387 5.68949 5.76879 5.78793 5.83196 5.90079 5.93902 5.95278 6.03200 6.12053 6.15424 6.26611 6.28199 6.30258 6.33428 6.41689 6.44103 6.57474 6.83801 6.89244 7.01919 7.12425 7.19114 7.49485 7.64124 7.86552 7.90388 8.08860 8.13256 8.46521 8.70043 8.79879 9.00383 9.99883 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.003866 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.369229 B = 7241.400818 C = 8516.445822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.138 4.138 4 C 0.100 3.900 5 N -0.617 5.617 6 C 0.118 3.882 7 C -0.134 4.134 8 C -0.121 4.121 9 C -0.151 4.151 10 C 0.575 3.425 11 O -0.567 6.567 12 C -0.273 4.273 13 C -0.082 4.082 14 C -0.170 4.170 15 C 0.126 3.874 16 C -0.448 4.448 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.785 5.785 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.233 4.233 25 C -0.034 4.034 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.125 0.875 46 H 0.284 0.716 47 H 0.097 0.903 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 1.659 -11.550 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.177 4.177 4 C -0.023 4.023 5 N -0.349 5.349 6 C -0.005 4.005 7 C -0.173 4.173 8 C -0.159 4.159 9 C -0.208 4.208 10 C 0.369 3.631 11 O -0.448 6.448 12 C -0.277 4.277 13 C -0.101 4.101 14 C -0.189 4.189 15 C 0.123 3.877 16 C -0.477 4.477 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.410 5.410 20 Si 0.739 3.261 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.252 4.252 25 C -0.053 4.053 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.143 0.857 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.100 2.044 -11.600 12.179 hybrid contribution -0.115 -0.645 0.539 0.849 sum -3.215 1.398 -11.060 11.603 Atomic orbital electron populations 1.21740 0.96079 1.01381 1.01447 1.21481 0.95678 0.96381 1.02783 1.22123 0.96088 0.97374 1.02075 1.21893 0.93486 0.83411 1.03499 1.47879 1.63376 1.12458 1.11190 1.21314 0.96841 0.94908 0.87419 1.21966 0.99247 0.99457 0.96609 1.21445 0.97915 0.99879 0.96633 1.21756 0.97946 1.01449 0.99676 1.18800 0.75240 0.86689 0.82338 1.90641 1.48315 1.21070 1.84726 1.18912 1.00484 1.07787 1.00544 1.21051 0.96619 0.94722 0.97693 1.21102 0.99547 1.01097 0.97201 1.17787 0.89441 0.89069 0.91441 1.19747 1.25098 1.01915 1.00944 0.90124 1.26015 0.92988 0.98177 0.97427 1.69685 1.24884 1.20121 1.26288 0.86252 0.79528 0.78767 0.81595 1.18688 1.20145 1.18837 1.20734 0.99282 1.04698 1.00508 1.20261 0.95686 0.95844 0.93511 0.92883 0.92678 0.93312 0.92244 0.90621 0.90948 0.92395 0.92056 0.87374 0.91444 0.90493 0.91469 0.92155 0.92223 0.91932 0.92882 0.92991 0.92715 0.87323 0.85702 0.90496 0.88511 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.14 -1.85 4.47 -26.73 -0.12 -1.97 16 4 C 0.10 1.52 4.87 -4.04 -0.02 1.50 16 5 N -0.62 -10.56 2.51 -174.87 -0.44 -11.00 16 6 C 0.12 1.70 5.33 -4.04 -0.02 1.67 16 7 C -0.13 -1.75 5.54 -26.74 -0.15 -1.90 16 8 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 9 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 10 C 0.57 12.30 7.31 -12.43 -0.09 12.21 16 11 O -0.57 -13.58 16.51 5.28 0.09 -13.49 16 12 C -0.27 -6.21 5.15 -104.73 -0.54 -6.74 16 13 C -0.08 -1.81 7.31 -39.61 -0.29 -2.10 16 14 C -0.17 -4.12 8.60 -39.27 -0.34 -4.45 16 15 C 0.13 3.18 5.57 -106.80 -0.59 2.59 16 16 C -0.45 -11.20 9.06 -37.75 -0.34 -11.54 16 17 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 18 C 0.07 1.70 5.28 -17.31 -0.09 1.61 16 19 N -0.79 -18.58 10.72 55.56 0.60 -17.99 16 20 Si 0.91 17.52 29.57 -169.99 -5.03 12.49 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 C -0.23 -5.62 9.73 -39.27 -0.38 -6.00 16 25 C -0.03 -0.79 9.56 -39.60 -0.38 -1.17 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 32 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.93 4.91 -51.93 -0.26 1.68 16 35 H 0.07 0.80 7.41 -51.93 -0.38 0.42 16 36 H 0.08 1.21 7.46 -51.93 -0.39 0.82 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.11 2.11 3.60 -52.49 -0.19 1.92 16 45 H 0.13 3.08 6.12 -52.49 -0.32 2.76 16 46 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 47 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 48 H 0.09 2.11 8.05 -52.49 -0.42 1.69 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -27.26 381.51 -10.11 -37.37 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.14 Total: 8.68 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.94 Total: -21.81 kcal Atomic # 7 Polarization: -29.14 SS G_CDS: 0.16 Total: -28.99 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.26 -10.11 -37.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.617 kcal (2) G-P(sol) polarization free energy of solvation -27.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds