Wall clock time and date at job start Tue Mar 31 2020 09:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47458 * 2 1 4 4 C 1.52999 * 109.47458 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47296 * 185.65705 * 4 3 2 6 6 C 1.46506 * 119.99573 * 285.24042 * 5 4 3 7 7 C 1.52994 * 109.47555 * 269.72483 * 6 5 4 8 8 C 1.52998 * 109.47343 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47025 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00121 * 104.97254 * 5 4 3 11 11 O 1.21593 * 119.99953 * 177.54002 * 10 5 4 12 12 C 1.47636 * 119.99991 * 357.53640 * 10 5 4 13 13 C 1.40018 * 119.89462 * 320.17612 * 12 10 5 14 14 C 1.36321 * 120.10226 * 179.76018 * 13 12 10 15 15 C 1.40887 * 119.89384 * 0.51786 * 14 13 12 16 16 C 1.41108 * 120.10503 * 179.71816 * 15 14 13 17 17 H 1.07998 * 119.99911 * 208.37791 * 16 15 14 18 18 C 1.40227 * 119.99848 * 28.36681 * 16 15 14 19 19 N 1.30647 * 120.00106 * 9.33308 * 18 16 15 20 20 Si 1.86800 * 119.99937 * 189.32628 * 18 16 15 21 21 H 1.48500 * 109.47001 * 60.00757 * 20 18 16 22 22 H 1.48506 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47488 * 300.00269 * 20 18 16 24 24 C 1.40886 * 119.79527 * 359.74086 * 15 14 13 25 25 C 1.36319 * 119.89237 * 359.97438 * 24 15 14 26 26 H 1.09004 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46878 * 299.99582 * 1 2 3 28 28 H 1.09003 * 109.47133 * 59.99156 * 1 2 3 29 29 H 1.09002 * 109.46878 * 240.00417 * 2 1 3 30 30 H 1.08996 * 109.47381 * 120.00595 * 2 1 3 31 31 H 1.09002 * 109.46735 * 60.00330 * 3 2 1 32 32 H 1.08996 * 109.47310 * 300.00639 * 3 2 1 33 33 H 1.09004 * 109.46584 * 65.65499 * 4 3 2 34 34 H 1.09003 * 109.46967 * 305.65766 * 4 3 2 35 35 H 1.08996 * 109.47104 * 29.73359 * 6 5 4 36 36 H 1.09006 * 109.46783 * 149.72700 * 6 5 4 37 37 H 1.09005 * 109.47421 * 300.00481 * 7 6 5 38 38 H 1.09006 * 109.46898 * 60.00288 * 7 6 5 39 39 H 1.09001 * 109.47050 * 299.99927 * 8 7 6 40 40 H 1.08988 * 109.47121 * 60.00150 * 8 7 6 41 41 H 1.09000 * 109.47833 * 60.00107 * 9 8 7 42 42 H 1.09001 * 109.47134 * 179.97438 * 9 8 7 43 43 H 1.09001 * 109.46697 * 299.99591 * 9 8 7 44 44 H 1.07999 * 119.94497 * 0.02632 * 13 12 10 45 45 H 1.07998 * 120.05175 * 180.23120 * 14 13 12 46 46 H 0.96993 * 120.00193 * 179.97438 * 19 18 16 47 47 H 1.08001 * 120.05787 * 179.97438 * 24 15 14 48 48 H 1.07997 * 119.95257 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8169 0.1355 6 6 3.9877 3.7355 -1.0036 7 6 5.2778 3.6361 -1.8199 8 6 5.2041 4.5960 -3.0091 9 6 6.4940 4.4961 -3.8258 10 6 4.5679 3.2377 1.3101 11 8 5.0143 4.3643 1.4104 12 6 4.5839 2.3310 2.4751 13 6 3.4886 1.4948 2.7237 14 6 3.5010 0.6524 3.7953 15 6 4.6135 0.6318 4.6595 16 6 4.6284 -0.2342 5.7735 17 1 5.1927 0.0303 6.6556 18 6 3.9104 -1.4381 5.7353 19 7 3.3794 -1.8467 4.6138 20 14 3.7133 -2.4577 7.2881 21 1 3.0123 -1.6546 8.3219 22 1 2.9191 -3.6750 6.9834 23 1 5.0522 -2.8544 7.7931 24 6 5.7108 1.4789 4.4083 25 6 5.6920 2.3138 3.3309 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9329 1.0189 -0.9372 34 1 3.9337 0.8432 0.8341 35 1 3.1382 3.4696 -1.6326 36 1 3.8654 4.7559 -0.6402 37 1 6.1273 3.9021 -1.1909 38 1 5.4001 2.6157 -2.1833 39 1 4.3546 4.3304 -3.6383 40 1 5.0820 5.6162 -2.6455 41 1 6.6158 3.4758 -4.1895 42 1 6.4413 5.1796 -4.6733 43 1 7.3437 4.7615 -3.1968 44 1 2.6346 1.5143 2.0629 45 1 2.6573 0.0051 3.9842 46 1 2.8830 -2.6796 4.5873 47 1 6.5657 1.4669 5.0683 48 1 6.5325 2.9638 3.1377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058242395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:10 Heat of formation + Delta-G solvation = -55.843045 kcal Electronic energy + Delta-G solvation = -25191.930000 eV Core-core repulsion = 21823.959457 eV Total energy + Delta-G solvation = -3367.970543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.24822 -39.00377 -37.70060 -36.37159 -35.53348 -34.60728 -32.19655 -31.33431 -30.41659 -29.31350 -27.56650 -24.95834 -24.66383 -22.95671 -22.86167 -22.19234 -21.80237 -20.10588 -19.35811 -18.09311 -17.67848 -16.92442 -16.47180 -16.22787 -16.17319 -15.60340 -15.30845 -15.05784 -14.56863 -14.48183 -14.40255 -14.18156 -13.86442 -13.67850 -13.55850 -13.52126 -13.29073 -13.06976 -12.81205 -12.70704 -12.46365 -12.37396 -12.14130 -12.11441 -12.08901 -11.97313 -11.80422 -11.73642 -11.51808 -11.42878 -11.15583 -11.12014 -10.63977 -9.62125 -9.48161 -9.29502 -8.67374 -6.45983 0.54899 1.14340 1.40317 1.45416 1.51516 1.99435 2.17042 2.20557 2.75996 3.66295 3.77778 3.92589 3.96631 4.06557 4.13467 4.24182 4.31137 4.34014 4.40743 4.42368 4.46588 4.60363 4.71451 4.73695 4.81093 4.86595 4.90020 4.95404 4.96196 5.00594 5.06536 5.08361 5.15454 5.19323 5.25479 5.30250 5.35247 5.36452 5.40468 5.45116 5.53330 5.63234 5.72861 5.84059 6.01424 6.02944 6.26243 6.50513 6.59378 6.83026 6.92209 7.35301 8.25301 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.003866 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.369229 B = 7241.400818 C = 8516.445822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.098 3.902 5 N -0.607 5.607 6 C 0.115 3.885 7 C -0.128 4.128 8 C -0.116 4.116 9 C -0.151 4.151 10 C 0.571 3.429 11 O -0.600 6.600 12 C -0.281 4.281 13 C -0.068 4.068 14 C -0.187 4.187 15 C 0.100 3.900 16 C -0.481 4.481 17 H 0.080 0.920 18 C 0.037 3.963 19 N -0.806 5.806 20 Si 0.986 3.014 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.247 4.247 25 C -0.044 4.044 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.134 0.866 45 H 0.117 0.883 46 H 0.294 0.706 47 H 0.102 0.898 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 0.806 -13.532 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.168 4.168 4 C -0.024 4.024 5 N -0.337 5.337 6 C -0.007 4.007 7 C -0.166 4.166 8 C -0.154 4.154 9 C -0.208 4.208 10 C 0.364 3.636 11 O -0.483 6.483 12 C -0.285 4.285 13 C -0.086 4.086 14 C -0.206 4.206 15 C 0.097 3.903 16 C -0.510 4.510 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.430 5.430 20 Si 0.806 3.194 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.267 4.267 25 C -0.063 4.063 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.151 0.849 45 H 0.135 0.865 46 H 0.105 0.895 47 H 0.120 0.880 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.539 1.181 -13.628 14.413 hybrid contribution 0.329 -0.365 1.036 1.147 sum -4.210 0.816 -12.592 13.302 Atomic orbital electron populations 1.21726 0.94910 1.01988 1.01847 1.21444 0.96667 0.95520 1.02370 1.22038 0.94298 0.98098 1.02331 1.22003 0.94901 0.81843 1.03677 1.47889 1.61620 1.13568 1.10592 1.21573 0.98947 0.93500 0.86687 1.21898 0.97147 1.00686 0.96894 1.21423 0.99291 0.98844 0.95819 1.21757 0.96975 1.02239 0.99851 1.18625 0.75697 0.85931 0.83315 1.90618 1.50061 1.22212 1.85454 1.19195 1.00284 1.07870 1.01197 1.21237 0.97042 0.93359 0.97002 1.21089 0.99249 1.02078 0.98223 1.18119 0.90116 0.89786 0.92302 1.19998 1.26737 1.03145 1.01073 0.90222 1.26811 0.92070 0.98623 1.00550 1.69717 1.24634 1.20774 1.27901 0.85186 0.79550 0.77302 0.77354 1.18523 1.18748 1.18580 1.20860 0.99527 1.05190 1.01108 1.20418 0.96350 0.95906 0.93675 0.92252 0.93683 0.91497 0.90425 0.93312 0.92916 0.89714 0.89179 0.90350 0.87771 0.92074 0.94768 0.91259 0.90008 0.92381 0.92325 0.91399 0.93914 0.84891 0.86497 0.89524 0.87969 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.12 -2.79 5.93 30.59 0.18 -2.61 16 3 C -0.13 -3.15 4.47 30.59 0.14 -3.01 16 4 C 0.10 2.81 4.87 86.38 0.42 3.23 16 5 N -0.61 -20.11 2.51 -825.44 -2.07 -22.19 16 6 C 0.11 3.06 5.33 86.38 0.46 3.52 16 7 C -0.13 -3.13 5.54 30.59 0.17 -2.96 16 8 C -0.12 -2.15 5.93 30.59 0.18 -1.97 16 9 C -0.15 -2.57 9.91 71.98 0.71 -1.86 16 10 C 0.57 24.71 7.31 86.73 0.63 25.34 16 11 O -0.60 -29.35 16.51 -4.01 -0.07 -29.42 16 12 C -0.28 -13.11 5.15 -19.93 -0.10 -13.21 16 13 C -0.07 -3.06 7.31 22.25 0.16 -2.90 16 14 C -0.19 -9.35 8.60 22.47 0.19 -9.16 16 15 C 0.10 5.25 5.57 -21.28 -0.12 5.13 16 16 C -0.48 -24.76 9.06 23.46 0.21 -24.54 16 17 H 0.08 3.95 7.87 -2.91 -0.02 3.93 16 18 C 0.04 1.73 5.28 85.35 0.45 2.18 16 19 N -0.81 -38.48 10.72 21.87 0.23 -38.24 16 20 Si 0.99 35.62 29.57 68.60 2.03 37.65 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 23 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 24 C -0.25 -12.48 9.73 22.47 0.22 -12.26 16 25 C -0.04 -2.16 9.56 22.25 0.21 -1.95 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.51 6.24 -2.39 -0.01 1.49 16 32 H 0.08 1.65 7.55 -2.39 -0.02 1.64 16 33 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.08 2.78 4.91 -2.39 -0.01 2.77 16 35 H 0.10 2.04 7.41 -2.39 -0.02 2.02 16 36 H 0.06 1.86 7.46 -2.38 -0.02 1.84 16 37 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.13 5.20 3.60 -2.91 -0.01 5.19 16 45 H 0.12 5.96 6.12 -2.91 -0.02 5.95 16 46 H 0.29 12.55 8.29 -92.71 -0.77 11.78 16 47 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 48 H 0.10 4.57 8.05 -2.91 -0.02 4.55 16 Total: -1.00 -61.12 381.51 5.89 -55.23 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.92 Total: 36.23 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.84 Total: -39.27 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -1.84 Total: -60.43 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.07 Total: -29.42 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -61.12 5.89 -55.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.608 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds