Wall clock time and date at job start Tue Mar 31 2020 10:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47185 * 2 1 4 4 H 1.09002 * 109.46698 * 304.99726 * 3 2 1 5 5 C 1.52994 * 109.47038 * 64.99368 * 3 2 1 6 6 C 1.53004 * 109.47038 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47356 * 300.00311 * 6 5 3 8 8 C 1.53002 * 109.46872 * 59.99749 * 7 6 5 9 9 H 1.08993 * 109.47586 * 60.00372 * 8 7 6 10 10 N 1.46906 * 109.47055 * 180.02562 * 8 7 6 11 11 C 1.46900 * 110.99638 * 274.99789 * 10 8 7 12 12 C 1.50698 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.38324 * 119.96356 * 89.99801 * 12 11 10 14 14 C 1.38285 * 120.13906 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.06679 * 0.02562 * 14 13 12 16 16 C 1.38861 * 119.93294 * 0.02562 * 15 14 13 17 17 O 1.35746 * 120.06798 * 179.97438 * 16 15 14 18 18 C 1.34827 * 117.00020 * 354.45918 * 17 16 15 19 19 H 1.07993 * 120.00264 * 5.06010 * 18 17 16 20 20 C 1.38658 * 119.99616 * 185.05635 * 18 17 16 21 21 N 1.31562 * 120.00340 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99786 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47035 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47135 * 120.00174 * 22 20 18 25 25 H 1.48504 * 109.47207 * 240.00155 * 22 20 18 26 26 C 1.38078 * 119.96931 * 269.73394 * 12 11 10 27 27 C 1.52995 * 109.47004 * 184.99672 * 3 2 1 28 28 H 1.08997 * 109.47510 * 300.00589 * 1 2 3 29 29 H 1.08998 * 109.47277 * 60.00428 * 1 2 3 30 30 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47510 * 239.99411 * 2 1 3 32 32 H 1.08999 * 109.46835 * 119.99274 * 2 1 3 33 33 H 1.09002 * 109.47084 * 60.00594 * 5 3 2 34 34 H 1.09002 * 109.47593 * 300.00127 * 5 3 2 35 35 H 1.09000 * 109.47402 * 180.02562 * 6 5 3 36 36 H 1.09002 * 109.46698 * 60.00358 * 6 5 3 37 37 H 1.08997 * 109.47399 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.47003 * 300.00155 * 7 6 5 39 39 H 1.00903 * 110.99919 * 38.95274 * 10 8 7 40 40 H 1.08994 * 109.47534 * 300.00270 * 11 10 8 41 41 H 1.09005 * 109.46866 * 60.00272 * 11 10 8 42 42 H 1.08001 * 119.93456 * 0.02864 * 13 12 11 43 43 H 1.07998 * 119.96603 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.03439 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99750 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.03132 * 359.97438 * 26 12 11 47 47 H 1.09002 * 109.47437 * 299.99601 * 27 3 2 48 48 H 1.08996 * 109.47257 * 60.00258 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3072 6 6 2.1446 3.5693 1.3070 7 6 3.6694 3.5717 1.1810 8 6 4.0742 2.8876 -0.1263 9 1 3.6393 3.4263 -0.9681 10 7 5.5383 2.8894 -0.2470 11 6 6.0167 4.1493 -0.8316 12 6 7.5194 4.1145 -0.9390 13 6 8.1191 3.6236 -2.0847 14 6 9.4977 3.5896 -2.1869 15 6 10.2803 4.0455 -1.1441 16 6 9.6814 4.5380 0.0078 17 8 10.4480 4.9863 1.0345 18 6 11.7812 4.8206 0.9208 19 1 12.2002 4.4243 0.0078 20 6 12.6144 5.1592 1.9762 21 7 12.1040 5.6417 3.0886 22 14 14.4616 4.9304 1.8184 23 1 14.7790 4.3765 0.4776 24 1 15.1388 6.2414 1.9848 25 1 14.9355 3.9918 2.8671 26 6 8.2964 4.5778 0.1043 27 6 3.5648 1.4443 -0.1256 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 2.0697 1.5876 2.1491 34 1 0.5488 2.1253 1.3968 35 1 1.8565 4.0566 2.2385 36 1 1.7096 4.1080 0.4651 37 1 4.0323 4.5995 1.1804 38 1 4.1043 3.0329 2.0229 39 1 5.9749 2.7163 0.6461 40 1 5.5841 4.2768 -1.8239 41 1 5.7174 4.9819 -0.1950 42 1 7.5093 3.2662 -2.9013 43 1 9.9629 3.2061 -3.0829 44 1 11.3570 4.0191 -1.2247 45 1 12.6868 5.8782 3.8270 46 1 7.8276 4.9653 0.9967 47 1 3.9994 0.9053 0.7162 48 1 3.8532 0.9570 -1.0570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068590232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:49 Heat of formation + Delta-G solvation = -37.995020 kcal Electronic energy + Delta-G solvation = -24146.746636 eV Core-core repulsion = 20779.550042 eV Total energy + Delta-G solvation = -3367.196594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.49914 -38.93189 -36.87355 -35.45567 -33.27891 -32.25839 -31.10584 -29.71302 -29.05597 -27.93460 -25.44686 -24.55736 -23.66038 -22.20666 -21.55737 -20.73909 -20.54878 -19.90561 -17.63270 -16.98036 -15.83101 -15.31314 -15.12034 -15.03461 -14.70660 -14.47707 -14.31679 -14.08223 -13.70374 -13.63912 -13.50102 -13.38439 -12.99701 -12.55148 -12.49612 -12.35326 -11.94603 -11.78977 -11.66081 -11.48281 -11.38048 -11.26843 -11.18188 -10.92843 -10.83535 -10.68514 -10.61654 -10.58715 -10.41785 -10.26037 -10.15777 -9.31354 -8.82511 -8.31515 -8.00416 -7.19627 -6.42946 -4.02000 2.13767 2.42393 3.13342 3.14862 3.20346 3.97713 4.15054 4.46861 4.57279 4.64285 4.82309 4.87501 4.92836 5.04440 5.11963 5.13339 5.19359 5.25611 5.33623 5.40462 5.43143 5.46959 5.49038 5.59775 5.61661 5.72311 5.77719 5.79687 5.86159 5.89374 5.92533 5.98413 6.00351 6.04758 6.07302 6.14496 6.22538 6.28952 6.33706 6.36143 6.69246 6.94143 7.10172 7.16259 7.31754 7.42164 7.46111 7.54133 7.85917 8.02415 9.03179 9.73970 10.75418 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.002445 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.420723 B =11446.984509 C =11949.030070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.152 4.152 8 C 0.089 3.911 9 H 0.074 0.926 10 N -0.679 5.679 11 C 0.107 3.893 12 C -0.047 4.047 13 C -0.189 4.189 14 C -0.078 4.078 15 C -0.231 4.231 16 C 0.152 3.848 17 O -0.181 6.181 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.185 4.185 27 C -0.101 4.101 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.345 0.655 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.269 0.731 46 H 0.112 0.888 47 H 0.061 0.939 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.661 -7.281 -5.897 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.191 4.191 8 C -0.021 4.021 9 H 0.092 0.908 10 N -0.309 5.309 11 C -0.022 4.022 12 C -0.047 4.047 13 C -0.208 4.208 14 C -0.096 4.096 15 C -0.251 4.251 16 C 0.099 3.901 17 O -0.085 6.085 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.205 4.205 27 C -0.139 4.139 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.164 0.836 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.143 0.857 45 H 0.078 0.922 46 H 0.130 0.870 47 H 0.080 0.920 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.613 -7.418 -6.066 21.829 hybrid contribution 0.946 0.526 0.691 1.284 sum -18.668 -6.892 -5.374 20.612 Atomic orbital electron populations 1.21822 0.96133 1.01341 1.01782 1.21557 0.95607 0.96486 1.02054 1.21182 0.95753 0.95699 0.97917 0.91386 1.21646 1.00325 0.95637 0.97650 1.21464 0.95472 0.96798 1.01561 1.22310 0.96444 1.01156 0.99163 1.21593 0.88120 0.96117 0.96316 0.90817 1.60625 1.04642 1.34440 1.31217 1.20813 0.91785 0.90218 0.99365 1.19183 0.93415 0.98217 0.93910 1.20418 0.94179 1.07766 0.98459 1.20749 0.93629 0.97882 0.97329 1.21189 1.00527 1.08379 0.95002 1.19309 0.91015 0.91498 0.88256 1.83974 1.18952 1.68625 1.36906 1.21360 0.78529 1.44741 1.02031 0.89076 1.25281 1.00350 0.96537 0.94428 1.70050 1.35817 1.40152 1.03976 0.85655 0.80782 0.78310 0.78720 1.19118 1.20198 1.20163 1.20026 0.91031 1.09476 0.99948 1.21551 0.93692 0.96082 1.02543 0.92581 0.92894 0.93040 0.91974 0.92044 0.92037 0.92031 0.92213 0.92151 0.92043 0.91680 0.83630 0.90790 0.94765 0.87648 0.87529 0.85681 0.92151 0.87000 0.91975 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.89 5.40 -26.73 -0.14 -1.04 16 3 C -0.09 -0.70 2.19 -90.62 -0.20 -0.90 16 4 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.12 -0.92 4.96 -26.73 -0.13 -1.05 16 6 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.15 -1.54 5.17 -26.73 -0.14 -1.68 16 8 C 0.09 0.95 2.47 -67.68 -0.17 0.78 16 9 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 10 N -0.68 -9.00 6.24 -107.96 -0.67 -9.68 16 11 C 0.11 1.53 5.61 -4.98 -0.03 1.50 16 12 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 13 C -0.19 -3.37 9.70 -39.53 -0.38 -3.75 16 14 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 15 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 16 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.18 -5.21 9.76 0.07 0.00 -5.21 16 18 C -0.39 -11.02 9.49 30.89 0.29 -10.72 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 21 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 22 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 C -0.18 -3.93 9.64 -39.39 -0.38 -4.30 16 27 C -0.10 -0.98 4.81 -26.70 -0.13 -1.11 16 28 H 0.06 0.36 6.56 -51.93 -0.34 0.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 38 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.34 4.84 8.46 -39.29 -0.33 4.50 16 40 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 41 H 0.03 0.48 7.38 -51.93 -0.38 0.10 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -29.73 377.41 -10.36 -40.09 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.23 Total: 6.59 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.89 Total: -28.40 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.09 Total: -34.47 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.73 -10.36 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068590232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.097 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds