Wall clock time and date at job start Tue Mar 31 2020 10:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47185 * 2 1 4 4 H 1.09002 * 109.46698 * 304.99726 * 3 2 1 5 5 C 1.52994 * 109.47038 * 64.99368 * 3 2 1 6 6 C 1.53004 * 109.47038 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47356 * 300.00311 * 6 5 3 8 8 C 1.53002 * 109.46872 * 59.99749 * 7 6 5 9 9 H 1.08993 * 109.47586 * 60.00372 * 8 7 6 10 10 N 1.46906 * 109.47055 * 180.02562 * 8 7 6 11 11 C 1.46900 * 110.99638 * 274.99789 * 10 8 7 12 12 C 1.50698 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.38324 * 119.96356 * 89.99801 * 12 11 10 14 14 C 1.38285 * 120.13906 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.06679 * 0.02562 * 14 13 12 16 16 C 1.38861 * 119.93294 * 0.02562 * 15 14 13 17 17 O 1.35746 * 120.06798 * 179.97438 * 16 15 14 18 18 C 1.34827 * 117.00020 * 354.45918 * 17 16 15 19 19 H 1.07993 * 120.00264 * 5.06010 * 18 17 16 20 20 C 1.38658 * 119.99616 * 185.05635 * 18 17 16 21 21 N 1.31562 * 120.00340 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99786 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47035 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47135 * 120.00174 * 22 20 18 25 25 H 1.48504 * 109.47207 * 240.00155 * 22 20 18 26 26 C 1.38078 * 119.96931 * 269.73394 * 12 11 10 27 27 C 1.52995 * 109.47004 * 184.99672 * 3 2 1 28 28 H 1.08997 * 109.47510 * 300.00589 * 1 2 3 29 29 H 1.08998 * 109.47277 * 60.00428 * 1 2 3 30 30 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47510 * 239.99411 * 2 1 3 32 32 H 1.08999 * 109.46835 * 119.99274 * 2 1 3 33 33 H 1.09002 * 109.47084 * 60.00594 * 5 3 2 34 34 H 1.09002 * 109.47593 * 300.00127 * 5 3 2 35 35 H 1.09000 * 109.47402 * 180.02562 * 6 5 3 36 36 H 1.09002 * 109.46698 * 60.00358 * 6 5 3 37 37 H 1.08997 * 109.47399 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.47003 * 300.00155 * 7 6 5 39 39 H 1.00903 * 110.99919 * 38.95274 * 10 8 7 40 40 H 1.08994 * 109.47534 * 300.00270 * 11 10 8 41 41 H 1.09005 * 109.46866 * 60.00272 * 11 10 8 42 42 H 1.08001 * 119.93456 * 0.02864 * 13 12 11 43 43 H 1.07998 * 119.96603 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.03439 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99750 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.03132 * 359.97438 * 26 12 11 47 47 H 1.09002 * 109.47437 * 299.99601 * 27 3 2 48 48 H 1.08996 * 109.47257 * 60.00258 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3072 6 6 2.1446 3.5693 1.3070 7 6 3.6694 3.5717 1.1810 8 6 4.0742 2.8876 -0.1263 9 1 3.6393 3.4263 -0.9681 10 7 5.5383 2.8894 -0.2470 11 6 6.0167 4.1493 -0.8316 12 6 7.5194 4.1145 -0.9390 13 6 8.1191 3.6236 -2.0847 14 6 9.4977 3.5896 -2.1869 15 6 10.2803 4.0455 -1.1441 16 6 9.6814 4.5380 0.0078 17 8 10.4480 4.9863 1.0345 18 6 11.7812 4.8206 0.9208 19 1 12.2002 4.4243 0.0078 20 6 12.6144 5.1592 1.9762 21 7 12.1040 5.6417 3.0886 22 14 14.4616 4.9304 1.8184 23 1 14.7790 4.3765 0.4776 24 1 15.1388 6.2414 1.9848 25 1 14.9355 3.9918 2.8671 26 6 8.2964 4.5778 0.1043 27 6 3.5648 1.4443 -0.1256 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 2.0697 1.5876 2.1491 34 1 0.5488 2.1253 1.3968 35 1 1.8565 4.0566 2.2385 36 1 1.7096 4.1080 0.4651 37 1 4.0323 4.5995 1.1804 38 1 4.1043 3.0329 2.0229 39 1 5.9749 2.7163 0.6461 40 1 5.5841 4.2768 -1.8239 41 1 5.7174 4.9819 -0.1950 42 1 7.5093 3.2662 -2.9013 43 1 9.9629 3.2061 -3.0829 44 1 11.3570 4.0191 -1.2247 45 1 12.6868 5.8782 3.8270 46 1 7.8276 4.9653 0.9967 47 1 3.9994 0.9053 0.7162 48 1 3.8532 0.9570 -1.0570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068590232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:48 Heat of formation + Delta-G solvation = -54.024673 kcal Electronic energy + Delta-G solvation = -24147.441734 eV Core-core repulsion = 20779.550042 eV Total energy + Delta-G solvation = -3367.891692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84261 -40.14868 -38.48653 -36.52231 -34.34888 -34.06317 -32.31169 -30.90233 -30.37326 -28.95602 -27.38345 -25.80599 -24.43508 -23.18537 -22.96266 -22.30868 -21.37666 -20.68355 -19.48107 -18.78329 -16.81210 -16.73785 -16.47640 -16.12044 -16.00961 -15.74272 -15.52839 -15.39982 -15.26787 -14.63593 -14.47573 -14.31736 -14.20672 -13.92529 -13.73095 -13.55076 -13.21912 -13.05504 -12.94918 -12.51242 -12.45545 -12.31383 -12.22776 -12.18891 -12.08483 -12.04773 -11.92119 -11.59521 -11.32689 -11.20917 -10.98541 -10.95501 -10.80716 -9.71741 -9.25452 -8.97521 -8.47497 -6.15716 0.52528 0.76252 1.34399 1.42907 1.52837 2.17139 2.78920 3.07133 3.37751 3.49986 3.73375 3.85665 3.97850 4.06055 4.11366 4.17613 4.22726 4.32446 4.35284 4.44682 4.49790 4.57882 4.62676 4.66219 4.68445 4.70440 4.75390 4.79486 4.82586 4.94896 5.06461 5.09971 5.12954 5.13845 5.17992 5.22120 5.29768 5.31798 5.33786 5.36720 5.45017 5.57035 5.64394 5.66374 5.73955 5.81085 6.02677 6.12639 6.25674 6.39703 6.97574 7.79016 8.76134 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.002445 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.420723 B =11446.984509 C =11949.030070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.081 4.081 4 H 0.073 0.927 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.149 4.149 8 C 0.092 3.908 9 H 0.081 0.919 10 N -0.684 5.684 11 C 0.112 3.888 12 C -0.037 4.037 13 C -0.171 4.171 14 C -0.073 4.073 15 C -0.245 4.245 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.196 4.196 27 C -0.096 4.096 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.338 0.662 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.117 0.883 45 H 0.272 0.728 46 H 0.104 0.896 47 H 0.052 0.948 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.160 -8.495 -8.390 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.100 4.100 4 H 0.091 0.909 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.188 4.188 8 C -0.018 4.018 9 H 0.099 0.901 10 N -0.313 5.313 11 C -0.016 4.016 12 C -0.037 4.037 13 C -0.190 4.190 14 C -0.091 4.091 15 C -0.264 4.264 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.488 4.488 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.175 1.175 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.216 4.216 27 C -0.134 4.134 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.053 0.947 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.135 0.865 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.070 0.930 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.162 -8.649 -8.606 24.427 hybrid contribution 1.139 0.821 1.282 1.901 sum -20.022 -7.829 -7.324 22.712 Atomic orbital electron populations 1.21807 0.95244 1.01780 1.02075 1.21540 0.96362 0.95877 1.01835 1.21134 0.94371 0.96294 0.98154 0.90879 1.21628 1.01041 0.95000 0.97303 1.21450 0.94043 0.97420 1.02081 1.22263 0.97761 1.00275 0.98550 1.21640 0.86452 0.96924 0.96746 0.90067 1.60664 1.06234 1.33555 1.30873 1.20807 0.89117 0.90921 1.00799 1.19589 0.95349 0.96047 0.92760 1.20946 0.94178 1.05008 0.98820 1.21161 0.94071 0.96465 0.97393 1.21301 1.00643 1.09045 0.95417 1.19874 0.92063 0.93220 0.88615 1.83936 1.19470 1.71429 1.39263 1.21850 0.79020 1.45109 1.02806 0.88174 1.26599 1.05919 0.95930 0.93753 1.70194 1.37994 1.42619 1.05241 0.84522 0.73552 0.78635 0.79444 1.17472 1.19321 1.19338 1.20225 0.90253 1.10054 1.01038 1.21504 0.94923 0.95112 1.01848 0.92311 0.92548 0.92604 0.92055 0.92464 0.92662 0.90765 0.91898 0.91401 0.93002 0.92672 0.84470 0.88528 0.94655 0.83826 0.83766 0.86498 0.91893 0.87747 0.92961 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 71.98 0.70 -0.96 16 2 C -0.12 -1.55 5.40 30.59 0.17 -1.38 16 3 C -0.08 -1.14 2.19 -10.80 -0.02 -1.17 16 4 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.11 -1.57 4.96 30.59 0.15 -1.42 16 6 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 7 C -0.15 -2.88 5.17 30.59 0.16 -2.72 16 8 C 0.09 1.80 2.47 44.93 0.11 1.91 16 9 H 0.08 1.51 7.80 -2.39 -0.02 1.49 16 10 N -0.68 -16.97 6.24 -495.47 -3.09 -20.06 16 11 C 0.11 2.95 5.61 85.56 0.48 3.43 16 12 C -0.04 -1.26 5.39 -19.88 -0.11 -1.37 16 13 C -0.17 -5.48 9.70 22.30 0.22 -5.26 16 14 C -0.07 -2.56 10.04 22.25 0.22 -2.34 16 15 C -0.24 -10.91 9.17 22.39 0.21 -10.71 16 16 C 0.11 5.72 6.65 22.58 0.15 5.87 16 17 O -0.23 -14.36 9.76 -22.67 -0.22 -14.58 16 18 C -0.41 -24.40 9.49 67.92 0.64 -23.75 16 19 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 21 N -0.92 -57.34 13.67 21.61 0.30 -57.04 16 22 Si 1.02 43.50 29.55 68.60 2.03 45.52 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 C -0.20 -8.52 9.64 22.39 0.22 -8.30 16 27 C -0.10 -1.71 4.81 30.61 0.15 -1.57 16 28 H 0.06 0.61 6.56 -2.39 -0.02 0.59 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.88 6.57 -2.39 -0.02 0.86 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 1.10 7.45 -2.39 -0.02 1.08 16 38 H 0.05 1.17 8.13 -2.38 -0.02 1.15 16 39 H 0.34 9.31 8.46 -89.69 -0.76 8.55 16 40 H 0.10 2.17 8.00 -2.39 -0.02 2.15 16 41 H 0.04 0.94 7.38 -2.38 -0.02 0.92 16 42 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 47 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.51 377.41 3.26 -65.25 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.17 Total: 33.15 kcal Atomic # 6 Polarization: -56.32 SS G_CDS: 4.08 Total: -52.24 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.79 Total: -77.10 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.22 Total: -14.58 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.51 3.26 -65.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068590232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.224 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds