Wall clock time and date at job start Tue Mar 31 2020 10:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 H 1.08998 * 109.46893 * 305.00222 * 3 2 1 5 5 C 1.53003 * 109.46685 * 65.00223 * 3 2 1 6 6 C 1.53000 * 109.46685 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46949 * 300.00130 * 6 5 3 8 8 C 1.52997 * 109.47386 * 60.00660 * 7 6 5 9 9 H 1.09003 * 109.47282 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47578 * 59.99508 * 8 7 6 11 11 C 1.46897 * 110.99859 * 85.00243 * 10 8 7 12 12 C 1.50703 * 109.47090 * 180.02562 * 11 10 8 13 13 C 1.38297 * 119.93275 * 89.99981 * 12 11 10 14 14 C 1.38103 * 120.06821 * 179.97438 * 13 12 11 15 15 C 1.38875 * 119.93000 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06756 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00114 * 5.53168 * 16 15 14 18 18 H 1.07999 * 120.00010 * 354.94892 * 17 16 15 19 19 C 1.38649 * 120.00144 * 175.21759 * 17 16 15 20 20 N 1.31558 * 119.99809 * 359.72816 * 19 17 16 21 21 Si 1.86802 * 120.00154 * 179.72492 * 19 17 16 22 22 H 1.48503 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47051 * 120.00346 * 21 19 17 24 24 H 1.48499 * 109.47221 * 240.00472 * 21 19 17 25 25 C 1.38884 * 119.86261 * 0.27199 * 15 14 13 26 26 C 1.38092 * 119.92795 * 359.45333 * 25 15 14 27 27 C 1.53003 * 109.46949 * 185.00353 * 3 2 1 28 28 H 1.08993 * 109.46771 * 299.99367 * 1 2 3 29 29 H 1.08998 * 109.47070 * 59.99905 * 1 2 3 30 30 H 1.09000 * 109.46567 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46338 * 240.00336 * 2 1 3 32 32 H 1.08994 * 109.47435 * 120.00743 * 2 1 3 33 33 H 1.08997 * 109.47191 * 300.00054 * 5 3 2 34 34 H 1.08995 * 109.46732 * 60.00386 * 5 3 2 35 35 H 1.08997 * 109.47357 * 59.99740 * 6 5 3 36 36 H 1.08999 * 109.47381 * 180.02562 * 6 5 3 37 37 H 1.08998 * 109.47216 * 299.99671 * 7 6 5 38 38 H 1.09008 * 109.46614 * 180.02562 * 7 6 5 39 39 H 1.00898 * 110.99912 * 208.95585 * 10 8 7 40 40 H 1.09003 * 109.47182 * 60.00141 * 11 10 8 41 41 H 1.09002 * 109.47204 * 300.00104 * 11 10 8 42 42 H 1.08003 * 119.96647 * 359.97438 * 13 12 11 43 43 H 1.07998 * 120.03274 * 179.97438 * 14 13 12 44 44 H 0.97009 * 119.99810 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.03250 * 179.72259 * 25 15 14 46 46 H 1.08010 * 119.96710 * 180.27685 * 26 25 15 47 47 H 1.08999 * 109.46940 * 59.99900 * 27 3 2 48 48 H 1.08997 * 109.46772 * 299.99968 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 2.1448 3.5691 1.3072 7 6 3.6696 3.5714 1.1810 8 6 4.0743 2.8876 -0.1264 9 1 5.1606 2.8889 -0.2160 10 7 3.4880 3.6137 -1.2608 11 6 4.3399 4.7417 -1.6607 12 6 3.7072 5.4613 -2.8239 13 6 2.8293 6.5050 -2.5947 14 6 2.2484 7.1668 -3.6586 15 6 2.5461 6.7827 -4.9595 16 8 1.9770 7.4316 -6.0074 17 6 1.2225 8.5119 -5.7217 18 1 1.0264 8.7769 -4.6933 19 6 0.6936 9.2792 -6.7482 20 7 0.9324 8.9564 -8.0010 21 14 -0.3582 10.7714 -6.3525 22 1 -0.4748 10.9181 -4.8793 23 1 0.2745 11.9882 -6.9221 24 1 -1.7099 10.5945 -6.9413 25 6 3.4233 5.7301 -5.1862 26 6 4.0053 5.0762 -4.1183 27 6 3.5649 1.4443 -0.1258 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.5490 2.1251 1.3970 34 1 2.0700 1.5874 2.1491 35 1 1.7098 4.1079 0.4654 36 1 1.8569 4.0563 2.2387 37 1 4.1046 3.0327 2.0228 38 1 4.0326 4.5993 1.1813 39 1 3.3200 2.9938 -2.0389 40 1 5.3216 4.3696 -1.9537 41 1 4.4476 5.4305 -0.8228 42 1 2.5979 6.8030 -1.5827 43 1 1.5626 7.9815 -3.4790 44 1 0.5621 9.4931 -8.7193 45 1 3.6533 5.4263 -6.1968 46 1 4.6911 4.2604 -4.2940 47 1 3.8532 0.9569 -1.0572 48 1 3.9995 0.9052 0.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068592124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:56 Heat of formation + Delta-G solvation = -34.732749 kcal Electronic energy + Delta-G solvation = -24545.372482 eV Core-core repulsion = 21178.317350 eV Total energy + Delta-G solvation = -3367.055132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.54582 -38.91211 -36.83455 -35.16342 -33.08271 -32.23821 -30.72530 -30.12542 -29.20526 -27.98639 -25.54062 -24.26196 -23.41917 -22.43396 -21.92434 -20.61257 -20.35442 -19.12565 -17.95567 -16.93484 -15.94071 -15.75817 -14.89524 -14.71863 -14.67996 -14.44773 -14.32028 -13.98549 -13.57164 -13.49674 -13.39908 -13.08754 -12.81622 -12.65079 -12.63829 -12.26120 -12.03104 -11.75976 -11.64972 -11.53199 -11.45341 -11.22188 -11.18283 -10.81955 -10.76114 -10.64142 -10.55851 -10.40913 -10.39475 -10.03814 -9.96711 -9.30163 -8.82072 -8.25212 -8.13153 -7.15230 -6.43670 -4.02258 2.25112 2.32744 3.13261 3.14939 3.20516 3.98084 4.24669 4.53936 4.62047 4.67773 4.77601 5.01810 5.08826 5.11515 5.16890 5.27632 5.31048 5.33250 5.39511 5.43068 5.50881 5.51868 5.58793 5.60992 5.74353 5.76129 5.78736 5.83134 5.88514 5.90614 5.93584 5.99511 6.07414 6.17986 6.22913 6.25221 6.32036 6.35750 6.46248 6.57711 6.73281 6.94257 7.06964 7.20746 7.25739 7.43953 7.46895 7.56718 7.86215 8.01907 9.02382 9.72974 10.74563 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.002774 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.034149 B =10091.355070 C =10406.217000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.083 4.083 4 H 0.083 0.917 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.104 4.104 8 C 0.085 3.915 9 H 0.038 0.962 10 N -0.674 5.674 11 C 0.118 3.882 12 C -0.182 4.182 13 C -0.049 4.049 14 C -0.235 4.235 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.194 4.194 26 C -0.069 4.069 27 C -0.114 4.114 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.341 0.659 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.058 0.942 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -14.033 17.435 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.101 0.899 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.025 4.025 9 H 0.056 0.944 10 N -0.307 5.307 11 C -0.010 4.010 12 C -0.184 4.184 13 C -0.067 4.067 14 C -0.255 4.255 15 C 0.102 3.898 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.213 4.213 26 C -0.088 4.088 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.079 0.921 45 H 0.133 0.867 46 H 0.124 0.876 47 H 0.077 0.923 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.457 -13.597 17.358 22.319 hybrid contribution 0.216 0.308 -0.252 0.453 sum 3.673 -13.290 17.106 21.971 Atomic orbital electron populations 1.21814 0.95982 1.01173 1.02135 1.21593 0.95943 0.96865 1.01404 1.21111 0.94737 0.95157 0.99119 0.89891 1.21562 1.00276 0.96046 0.96778 1.21403 0.95404 0.96485 1.01677 1.21489 0.96796 1.00168 0.95806 1.21509 0.95860 0.92685 0.92405 0.94421 1.60592 1.48271 1.12011 1.09802 1.20654 0.92517 0.92308 0.95504 1.19125 1.04959 1.01170 0.93102 1.20557 0.94546 0.94193 0.97452 1.21167 1.06821 1.05192 0.92277 1.19393 0.90922 0.91748 0.87754 1.83975 1.56673 1.38596 1.29035 1.21377 1.28077 1.02784 0.94434 0.89016 1.25286 0.97952 0.98838 0.94487 1.70053 1.42612 1.38601 0.98610 0.85652 0.79043 0.79912 0.78859 1.19077 1.20168 1.20149 1.20160 1.02412 0.99847 0.98904 1.20471 0.98405 0.98106 0.91826 1.21764 0.96334 0.95538 1.01529 0.92563 0.92547 0.93242 0.92330 0.92545 0.92218 0.92993 0.90140 0.93240 0.92679 0.92329 0.84066 0.95690 0.91336 0.87585 0.85672 0.92110 0.86709 0.87595 0.92299 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.14 16 3 C -0.08 -0.76 2.03 -90.62 -0.18 -0.94 16 4 H 0.08 0.92 7.48 -51.93 -0.39 0.53 16 5 C -0.11 -1.00 4.96 -26.73 -0.13 -1.13 16 6 C -0.11 -1.14 5.77 -26.73 -0.15 -1.29 16 7 C -0.10 -1.02 5.53 -26.73 -0.15 -1.17 16 8 C 0.09 0.85 2.82 -67.69 -0.19 0.66 16 9 H 0.04 0.38 7.80 -51.93 -0.41 -0.02 16 10 N -0.67 -8.02 4.81 -107.96 -0.52 -8.53 16 11 C 0.12 1.57 5.61 -4.98 -0.03 1.54 16 12 C -0.18 -3.06 5.40 -104.57 -0.56 -3.62 16 13 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 14 C -0.24 -5.16 9.17 -39.39 -0.36 -5.52 16 15 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 16 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 17 C -0.39 -11.00 9.49 30.88 0.29 -10.70 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 21 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.19 -4.11 9.99 -39.40 -0.39 -4.50 16 26 C -0.07 -1.22 9.69 -39.61 -0.38 -1.60 16 27 C -0.11 -1.00 4.59 -26.70 -0.12 -1.13 16 28 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.55 6.56 -51.93 -0.34 0.20 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.99 7.60 -51.93 -0.39 0.59 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.61 7.46 -51.92 -0.39 0.22 16 39 H 0.34 4.12 8.18 -39.29 -0.32 3.80 16 40 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 41 H 0.07 0.90 7.38 -51.93 -0.38 0.51 16 42 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 46 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 47 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -29.30 374.67 -10.19 -39.49 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.15 Total: 5.90 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -2.89 Total: -28.24 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.24 Total: -33.26 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.30 -10.19 -39.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068592124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.755 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds