Wall clock time and date at job start Tue Mar 31 2020 10:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47198 * 2 1 4 4 H 1.08998 * 109.46893 * 305.00222 * 3 2 1 5 5 C 1.53003 * 109.46685 * 65.00223 * 3 2 1 6 6 C 1.53000 * 109.46685 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46949 * 300.00130 * 6 5 3 8 8 C 1.52997 * 109.47386 * 60.00660 * 7 6 5 9 9 H 1.09003 * 109.47282 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47578 * 59.99508 * 8 7 6 11 11 C 1.46897 * 110.99859 * 85.00243 * 10 8 7 12 12 C 1.50703 * 109.47090 * 180.02562 * 11 10 8 13 13 C 1.38297 * 119.93275 * 89.99981 * 12 11 10 14 14 C 1.38103 * 120.06821 * 179.97438 * 13 12 11 15 15 C 1.38875 * 119.93000 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06756 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00114 * 5.53168 * 16 15 14 18 18 H 1.07999 * 120.00010 * 354.94892 * 17 16 15 19 19 C 1.38649 * 120.00144 * 175.21759 * 17 16 15 20 20 N 1.31558 * 119.99809 * 359.72816 * 19 17 16 21 21 Si 1.86802 * 120.00154 * 179.72492 * 19 17 16 22 22 H 1.48503 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47051 * 120.00346 * 21 19 17 24 24 H 1.48499 * 109.47221 * 240.00472 * 21 19 17 25 25 C 1.38884 * 119.86261 * 0.27199 * 15 14 13 26 26 C 1.38092 * 119.92795 * 359.45333 * 25 15 14 27 27 C 1.53003 * 109.46949 * 185.00353 * 3 2 1 28 28 H 1.08993 * 109.46771 * 299.99367 * 1 2 3 29 29 H 1.08998 * 109.47070 * 59.99905 * 1 2 3 30 30 H 1.09000 * 109.46567 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46338 * 240.00336 * 2 1 3 32 32 H 1.08994 * 109.47435 * 120.00743 * 2 1 3 33 33 H 1.08997 * 109.47191 * 300.00054 * 5 3 2 34 34 H 1.08995 * 109.46732 * 60.00386 * 5 3 2 35 35 H 1.08997 * 109.47357 * 59.99740 * 6 5 3 36 36 H 1.08999 * 109.47381 * 180.02562 * 6 5 3 37 37 H 1.08998 * 109.47216 * 299.99671 * 7 6 5 38 38 H 1.09008 * 109.46614 * 180.02562 * 7 6 5 39 39 H 1.00898 * 110.99912 * 208.95585 * 10 8 7 40 40 H 1.09003 * 109.47182 * 60.00141 * 11 10 8 41 41 H 1.09002 * 109.47204 * 300.00104 * 11 10 8 42 42 H 1.08003 * 119.96647 * 359.97438 * 13 12 11 43 43 H 1.07998 * 120.03274 * 179.97438 * 14 13 12 44 44 H 0.97009 * 119.99810 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.03250 * 179.72259 * 25 15 14 46 46 H 1.08010 * 119.96710 * 180.27685 * 26 25 15 47 47 H 1.08999 * 109.46940 * 59.99900 * 27 3 2 48 48 H 1.08997 * 109.46772 * 299.99968 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1264 1.3074 6 6 2.1448 3.5691 1.3072 7 6 3.6696 3.5714 1.1810 8 6 4.0743 2.8876 -0.1264 9 1 5.1606 2.8889 -0.2160 10 7 3.4880 3.6137 -1.2608 11 6 4.3399 4.7417 -1.6607 12 6 3.7072 5.4613 -2.8239 13 6 2.8293 6.5050 -2.5947 14 6 2.2484 7.1668 -3.6586 15 6 2.5461 6.7827 -4.9595 16 8 1.9770 7.4316 -6.0074 17 6 1.2225 8.5119 -5.7217 18 1 1.0264 8.7769 -4.6933 19 6 0.6936 9.2792 -6.7482 20 7 0.9324 8.9564 -8.0010 21 14 -0.3582 10.7714 -6.3525 22 1 -0.4748 10.9181 -4.8793 23 1 0.2745 11.9882 -6.9221 24 1 -1.7099 10.5945 -6.9413 25 6 3.4233 5.7301 -5.1862 26 6 4.0053 5.0762 -4.1183 27 6 3.5649 1.4443 -0.1258 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.5490 2.1251 1.3970 34 1 2.0700 1.5874 2.1491 35 1 1.7098 4.1079 0.4654 36 1 1.8569 4.0563 2.2387 37 1 4.1046 3.0327 2.0228 38 1 4.0326 4.5993 1.1813 39 1 3.3200 2.9938 -2.0389 40 1 5.3216 4.3696 -1.9537 41 1 4.4476 5.4305 -0.8228 42 1 2.5979 6.8030 -1.5827 43 1 1.5626 7.9815 -3.4790 44 1 0.5621 9.4931 -8.7193 45 1 3.6533 5.4263 -6.1968 46 1 4.6911 4.2604 -4.2940 47 1 3.8532 0.9569 -1.0572 48 1 3.9995 0.9052 0.7160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068592124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:55 Heat of formation + Delta-G solvation = -49.945570 kcal Electronic energy + Delta-G solvation = -24546.032159 eV Core-core repulsion = 21178.317350 eV Total energy + Delta-G solvation = -3367.714809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.82596 -40.17411 -38.45459 -36.15754 -34.37485 -33.81627 -31.86653 -31.69065 -30.14226 -29.04319 -27.44961 -25.43880 -24.31069 -23.59827 -23.19094 -21.92565 -21.31810 -19.91286 -19.82304 -18.82002 -16.98291 -16.64985 -16.37785 -16.15869 -15.79753 -15.62323 -15.49478 -15.36446 -15.06976 -14.80962 -14.46515 -14.27089 -14.10158 -13.85596 -13.58695 -13.43507 -13.20027 -13.09340 -12.84061 -12.69650 -12.43424 -12.28877 -12.27997 -12.13379 -12.10786 -11.95553 -11.78610 -11.53489 -11.24396 -11.15671 -10.80464 -10.77106 -10.70389 -9.75570 -9.19300 -8.86940 -8.47197 -6.15075 0.62329 0.70528 1.34762 1.42997 1.53131 2.17754 2.80227 3.12913 3.50386 3.54877 3.83111 3.90111 3.98857 4.08618 4.12443 4.22620 4.33697 4.36987 4.44173 4.52921 4.58172 4.62047 4.65745 4.68814 4.77557 4.79291 4.84919 4.88054 4.90068 5.05531 5.10174 5.12753 5.14674 5.17496 5.23914 5.24160 5.32346 5.37702 5.43654 5.48659 5.57905 5.60287 5.61560 5.73668 5.79628 5.85447 6.03872 6.21370 6.31760 6.59413 6.97921 7.79341 8.76428 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.002774 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.034149 B =10091.355070 C =10406.217000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.080 4.080 4 H 0.060 0.940 5 C -0.106 4.106 6 C -0.111 4.111 7 C -0.103 4.103 8 C 0.087 3.913 9 H 0.046 0.954 10 N -0.681 5.681 11 C 0.124 3.876 12 C -0.154 4.154 13 C -0.050 4.050 14 C -0.244 4.244 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.252 1.252 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.205 4.205 26 C -0.060 4.060 27 C -0.109 4.109 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.340 0.660 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.272 0.728 45 H 0.111 0.889 46 H 0.146 0.854 47 H 0.062 0.938 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -15.470 20.630 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.098 4.098 4 H 0.079 0.921 5 C -0.144 4.144 6 C -0.148 4.148 7 C -0.142 4.142 8 C -0.022 4.022 9 H 0.064 0.936 10 N -0.313 5.313 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.068 4.068 14 C -0.263 4.263 15 C 0.063 3.937 16 O -0.141 6.141 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.176 1.176 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.224 4.224 26 C -0.078 4.078 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.159 0.841 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.163 0.837 47 H 0.080 0.920 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.618 -15.074 20.606 25.945 hybrid contribution 0.036 0.497 -1.003 1.119 sum 4.654 -14.578 19.603 24.869 Atomic orbital electron populations 1.21817 0.96221 1.01539 1.01594 1.21566 0.95723 0.96288 1.01911 1.21045 0.95126 0.95432 0.98219 0.92105 1.21536 1.00147 0.95532 0.97162 1.21358 0.95812 0.96845 1.00809 1.21497 0.96300 1.00069 0.96284 1.21551 0.96169 0.93053 0.91425 0.93633 1.60526 1.48349 1.12095 1.10356 1.20621 0.92998 0.92781 0.94051 1.19632 1.02220 0.99332 0.94287 1.20866 0.94186 0.94142 0.97627 1.21242 1.07194 1.05482 0.92429 1.19938 0.92584 0.93052 0.88103 1.83937 1.58957 1.40012 1.31177 1.21844 1.28519 1.03309 0.95165 0.88267 1.26580 0.99276 1.02122 0.94091 1.70194 1.45120 1.40772 0.99916 0.84535 0.76977 0.75353 0.79374 1.17552 1.19272 1.19276 1.20433 1.02305 0.99493 1.00183 1.20876 0.97811 0.98132 0.91011 1.21739 0.95772 0.94894 1.02319 0.92470 0.93739 0.92446 0.92262 0.91526 0.92598 0.91847 0.92572 0.92864 0.91164 0.92925 0.84077 0.93848 0.90493 0.84999 0.86755 0.91856 0.87043 0.83668 0.91959 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 71.98 0.70 -1.62 16 2 C -0.12 -1.67 5.40 30.60 0.17 -1.50 16 3 C -0.08 -1.28 2.03 -10.79 -0.02 -1.30 16 4 H 0.06 1.26 7.48 -2.39 -0.02 1.24 16 5 C -0.11 -1.70 4.96 30.60 0.15 -1.55 16 6 C -0.11 -2.00 5.77 30.60 0.18 -1.82 16 7 C -0.10 -1.69 5.53 30.59 0.17 -1.52 16 8 C 0.09 1.43 2.82 44.93 0.13 1.55 16 9 H 0.05 0.71 7.80 -2.39 -0.02 0.70 16 10 N -0.68 -13.99 4.81 -495.48 -2.38 -16.37 16 11 C 0.12 2.79 5.61 85.56 0.48 3.27 16 12 C -0.15 -4.73 5.40 -19.83 -0.11 -4.84 16 13 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 14 C -0.24 -10.92 9.17 22.39 0.21 -10.72 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.37 9.76 -22.77 -0.22 -14.59 16 17 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 18 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 19 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 20 N -0.92 -57.33 13.67 21.61 0.30 -57.04 16 21 Si 1.02 43.58 29.55 68.60 2.03 45.61 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 C -0.20 -8.79 9.99 22.39 0.22 -8.57 16 26 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 27 C -0.11 -1.56 4.59 30.61 0.14 -1.42 16 28 H 0.06 0.83 6.56 -2.39 -0.02 0.82 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.93 6.56 -2.39 -0.02 0.92 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.06 1.29 7.60 -2.39 -0.02 1.28 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.93 7.46 -2.38 -0.02 0.91 16 39 H 0.34 7.16 8.18 -89.70 -0.73 6.43 16 40 H 0.04 0.87 8.00 -2.39 -0.02 0.85 16 41 H 0.08 1.68 7.38 -2.39 -0.02 1.66 16 42 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.11 5.26 5.64 -2.91 -0.02 5.25 16 44 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 45 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 46 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 47 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.29 374.67 4.01 -64.28 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.20 Total: 30.27 kcal Atomic # 6 Polarization: -56.25 SS G_CDS: 4.10 Total: -52.15 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -2.09 Total: -73.41 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.29 4.01 -64.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068592124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.330 kcal (2) G-P(sol) polarization free energy of solvation -68.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds