Wall clock time and date at job start Tue Mar 31 2020 10:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46964 * 2 1 4 4 H 1.09003 * 109.47413 * 55.00174 * 3 2 1 5 5 C 1.53005 * 109.47223 * 294.99791 * 3 2 1 6 6 C 1.53005 * 109.47178 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.46961 * 60.00279 * 6 5 3 8 8 C 1.53002 * 109.47367 * 299.99544 * 7 6 5 9 9 H 1.08998 * 109.47409 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47207 * 300.00671 * 8 7 6 11 11 C 1.46901 * 110.99836 * 274.99440 * 10 8 7 12 12 C 1.50701 * 109.46934 * 179.97438 * 11 10 8 13 13 C 1.38311 * 119.93375 * 269.72850 * 12 11 10 14 14 C 1.38097 * 120.06589 * 179.72989 * 13 12 11 15 15 C 1.38881 * 119.93164 * 0.54275 * 14 13 12 16 16 O 1.35750 * 120.06551 * 179.74982 * 15 14 13 17 17 C 1.34830 * 117.00119 * 174.44219 * 16 15 14 18 18 H 1.08004 * 119.99549 * 5.06114 * 17 16 15 19 19 C 1.38653 * 120.00277 * 185.05507 * 17 16 15 20 20 N 1.31557 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47121 * 60.00817 * 21 19 17 23 23 H 1.48503 * 109.46699 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47363 * 300.00126 * 21 19 17 25 25 C 1.38874 * 119.86533 * 359.73224 * 15 14 13 26 26 C 1.38102 * 119.92814 * 359.97438 * 25 15 14 27 27 C 1.53004 * 109.47139 * 175.00241 * 3 2 1 28 28 H 1.08999 * 109.47487 * 60.00389 * 1 2 3 29 29 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47179 * 299.99758 * 1 2 3 31 31 H 1.08998 * 109.47154 * 239.99685 * 2 1 3 32 32 H 1.09001 * 109.46899 * 120.00069 * 2 1 3 33 33 H 1.09003 * 109.47238 * 300.00489 * 5 3 2 34 34 H 1.08998 * 109.46537 * 60.00133 * 5 3 2 35 35 H 1.08999 * 109.46654 * 180.02562 * 6 5 3 36 36 H 1.09003 * 109.46536 * 300.00037 * 6 5 3 37 37 H 1.09008 * 109.46896 * 180.02562 * 7 6 5 38 38 H 1.08993 * 109.47676 * 59.99906 * 7 6 5 39 39 H 1.00901 * 111.00414 * 151.04340 * 10 8 7 40 40 H 1.08993 * 109.47162 * 299.99803 * 11 10 8 41 41 H 1.09002 * 109.47079 * 60.00338 * 11 10 8 42 42 H 1.07995 * 119.95903 * 0.02562 * 13 12 11 43 43 H 1.07997 * 120.03007 * 180.27348 * 14 13 12 44 44 H 0.97000 * 119.99826 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.03476 * 180.02562 * 25 15 14 46 46 H 1.08002 * 119.96323 * 179.97438 * 26 25 15 47 47 H 1.09007 * 109.46942 * 299.99763 * 27 3 2 48 48 H 1.08993 * 109.47016 * 59.99691 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.1457 3.5689 -1.3077 7 6 3.6705 3.5701 -1.1823 8 6 4.0753 2.8862 0.1251 9 1 5.1616 2.8874 0.2147 10 7 3.4900 3.6129 1.2596 11 6 4.3429 4.7404 1.6590 12 6 3.7112 5.4606 2.8223 13 6 2.8383 6.5088 2.5933 14 6 2.2535 7.1671 3.6572 15 6 2.5515 6.7831 4.9582 16 8 1.9822 7.4316 6.0060 17 6 2.2233 6.9363 7.2366 18 1 2.9100 6.1122 7.3619 19 6 1.5898 7.4850 8.3412 20 7 0.7531 8.4886 8.1885 21 14 1.9246 6.7991 10.0462 22 1 3.3702 6.9329 10.3586 23 1 1.1293 7.5535 11.0481 24 1 1.5398 5.3655 10.0874 25 6 3.4328 5.7340 5.1849 26 6 4.0096 5.0756 4.1167 27 6 3.5648 1.4443 0.1257 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5874 -2.1492 34 1 0.5489 2.1251 -1.3969 35 1 1.8570 4.0562 -2.2389 36 1 1.7114 4.1081 -0.4658 37 1 4.0342 4.5977 -1.1820 38 1 4.1048 3.0309 -2.0240 39 1 3.3219 2.9933 2.0381 40 1 5.3244 4.3676 1.9517 41 1 4.4508 5.4290 0.8210 42 1 2.6101 6.8094 1.5815 43 1 1.5686 7.9826 3.4777 44 1 0.3102 8.8727 8.9613 45 1 3.6661 5.4328 6.1954 46 1 4.6954 4.2600 4.2924 47 1 3.8532 0.9570 1.0571 48 1 3.9993 0.9053 -0.7161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068592126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:59 Heat of formation + Delta-G solvation = -34.607398 kcal Electronic energy + Delta-G solvation = -24542.338735 eV Core-core repulsion = 21175.289039 eV Total energy + Delta-G solvation = -3367.049696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.54640 -38.91236 -36.83102 -35.16177 -33.08297 -32.23946 -30.72212 -30.13003 -29.19651 -27.99434 -25.51596 -24.28496 -23.42070 -22.42944 -21.91770 -20.60998 -20.34347 -19.12249 -17.95366 -16.99622 -15.89107 -15.66600 -14.87926 -14.84939 -14.68654 -14.50461 -14.23883 -13.94839 -13.62830 -13.56030 -13.36673 -13.10779 -12.74110 -12.65773 -12.52072 -12.29839 -12.00495 -11.83323 -11.64636 -11.55038 -11.45509 -11.20313 -11.17154 -10.81151 -10.74247 -10.65819 -10.55994 -10.45642 -10.37779 -10.03533 -9.96732 -9.31523 -8.81698 -8.25159 -8.13015 -7.15152 -6.43524 -4.02484 2.25748 2.32376 3.13488 3.14648 3.17446 3.97727 4.24877 4.54299 4.62424 4.68032 4.77825 5.02164 5.09253 5.11204 5.17316 5.29737 5.31920 5.33799 5.39954 5.41610 5.50654 5.52083 5.59108 5.61101 5.74035 5.76452 5.77982 5.84549 5.87228 5.91062 5.94010 6.00449 6.07689 6.18270 6.22985 6.25627 6.32343 6.36009 6.46074 6.57782 6.74323 6.93586 7.06287 7.19003 7.30590 7.40077 7.46396 7.57007 7.86472 8.01535 9.02065 9.72910 10.74556 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002808 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.674686 B = 9968.213260 C =10550.728563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.083 4.083 4 H 0.083 0.917 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.104 4.104 8 C 0.085 3.915 9 H 0.038 0.962 10 N -0.674 5.674 11 C 0.118 3.882 12 C -0.182 4.182 13 C -0.052 4.052 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.235 4.235 26 C -0.066 4.066 27 C -0.114 4.114 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.341 0.659 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -14.085 -16.920 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.101 0.899 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.025 4.025 9 H 0.056 0.944 10 N -0.307 5.307 11 C -0.010 4.010 12 C -0.183 4.183 13 C -0.071 4.071 14 C -0.214 4.214 15 C 0.102 3.898 16 O -0.082 6.082 17 C -0.469 4.469 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.254 4.254 26 C -0.085 4.085 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.159 0.841 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.120 0.880 47 H 0.077 0.923 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.986 -13.348 -17.147 22.093 hybrid contribution 0.979 -0.864 1.374 1.895 sum 4.965 -14.212 -15.774 21.805 Atomic orbital electron populations 1.21813 0.95974 1.01176 1.02136 1.21589 0.95950 0.96865 1.01403 1.21110 0.94722 0.95165 0.99126 0.89882 1.21564 1.00273 0.96054 0.96768 1.21402 0.95388 0.96488 1.01681 1.21486 0.96797 1.00160 0.95793 1.21495 0.95863 0.92698 0.92416 0.94430 1.60599 1.48226 1.12053 1.09801 1.20656 0.92515 0.92329 0.95487 1.19128 1.05050 1.01056 0.93097 1.20452 0.94917 0.94511 0.97182 1.20225 1.06252 1.04821 0.90083 1.19396 0.91171 0.90404 0.88850 1.83979 1.63012 1.48026 1.13174 1.21270 1.27190 1.17902 0.80488 0.89185 1.25277 0.95599 0.96191 0.99419 1.70030 1.26143 1.22288 1.31376 0.85795 0.78707 0.78892 0.80117 1.19534 1.20276 1.19512 1.21108 1.03746 1.01155 0.99392 1.20581 0.98003 0.97870 0.92069 1.21747 0.96345 0.95557 1.01528 0.92559 0.93246 0.92541 0.92547 0.92334 0.93004 0.92209 0.93232 0.90132 0.92319 0.92681 0.84053 0.95734 0.91300 0.87141 0.86644 0.91986 0.85735 0.88044 0.92311 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.16 0.36 -0.91 16 2 C -0.12 -1.01 5.40 -26.74 -0.14 -1.15 16 3 C -0.08 -0.76 2.03 -90.62 -0.18 -0.95 16 4 H 0.08 0.92 7.48 -51.93 -0.39 0.54 16 5 C -0.11 -0.99 4.96 -26.73 -0.13 -1.13 16 6 C -0.11 -1.12 5.77 -26.73 -0.15 -1.28 16 7 C -0.10 -1.01 5.53 -26.73 -0.15 -1.16 16 8 C 0.09 0.85 2.82 -67.74 -0.19 0.66 16 9 H 0.04 0.38 7.80 -51.93 -0.40 -0.02 16 10 N -0.67 -8.05 4.81 -108.02 -0.52 -8.57 16 11 C 0.12 1.57 5.61 -4.97 -0.03 1.54 16 12 C -0.18 -3.06 5.40 -104.57 -0.56 -3.62 16 13 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 14 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 15 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 16 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 17 C -0.39 -11.04 9.49 30.89 0.29 -10.74 16 18 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 21 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 26 C -0.07 -1.20 9.69 -39.61 -0.38 -1.59 16 27 C -0.11 -1.02 4.58 -26.75 -0.12 -1.14 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.98 7.60 -51.93 -0.39 0.58 16 37 H 0.06 0.60 7.45 -51.92 -0.39 0.22 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.34 4.19 8.18 -39.29 -0.32 3.87 16 40 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 41 H 0.07 0.89 7.37 -51.93 -0.38 0.51 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 2.72 5.64 -52.49 -0.30 2.42 16 46 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -29.26 374.65 -10.19 -39.44 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.15 Total: 6.06 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -2.90 Total: -28.28 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.24 Total: -33.30 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.26 -10.19 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068592126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.835 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds