Wall clock time and date at job start Tue Mar 31 2020 10:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46964 * 2 1 4 4 H 1.09003 * 109.47413 * 55.00174 * 3 2 1 5 5 C 1.53005 * 109.47223 * 294.99791 * 3 2 1 6 6 C 1.53005 * 109.47178 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.46961 * 60.00279 * 6 5 3 8 8 C 1.53002 * 109.47367 * 299.99544 * 7 6 5 9 9 H 1.08998 * 109.47409 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47207 * 300.00671 * 8 7 6 11 11 C 1.46901 * 110.99836 * 274.99440 * 10 8 7 12 12 C 1.50701 * 109.46934 * 179.97438 * 11 10 8 13 13 C 1.38311 * 119.93375 * 269.72850 * 12 11 10 14 14 C 1.38097 * 120.06589 * 179.72989 * 13 12 11 15 15 C 1.38881 * 119.93164 * 0.54275 * 14 13 12 16 16 O 1.35750 * 120.06551 * 179.74982 * 15 14 13 17 17 C 1.34830 * 117.00119 * 174.44219 * 16 15 14 18 18 H 1.08004 * 119.99549 * 5.06114 * 17 16 15 19 19 C 1.38653 * 120.00277 * 185.05507 * 17 16 15 20 20 N 1.31557 * 119.99953 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47121 * 60.00817 * 21 19 17 23 23 H 1.48503 * 109.46699 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47363 * 300.00126 * 21 19 17 25 25 C 1.38874 * 119.86533 * 359.73224 * 15 14 13 26 26 C 1.38102 * 119.92814 * 359.97438 * 25 15 14 27 27 C 1.53004 * 109.47139 * 175.00241 * 3 2 1 28 28 H 1.08999 * 109.47487 * 60.00389 * 1 2 3 29 29 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47179 * 299.99758 * 1 2 3 31 31 H 1.08998 * 109.47154 * 239.99685 * 2 1 3 32 32 H 1.09001 * 109.46899 * 120.00069 * 2 1 3 33 33 H 1.09003 * 109.47238 * 300.00489 * 5 3 2 34 34 H 1.08998 * 109.46537 * 60.00133 * 5 3 2 35 35 H 1.08999 * 109.46654 * 180.02562 * 6 5 3 36 36 H 1.09003 * 109.46536 * 300.00037 * 6 5 3 37 37 H 1.09008 * 109.46896 * 180.02562 * 7 6 5 38 38 H 1.08993 * 109.47676 * 59.99906 * 7 6 5 39 39 H 1.00901 * 111.00414 * 151.04340 * 10 8 7 40 40 H 1.08993 * 109.47162 * 299.99803 * 11 10 8 41 41 H 1.09002 * 109.47079 * 60.00338 * 11 10 8 42 42 H 1.07995 * 119.95903 * 0.02562 * 13 12 11 43 43 H 1.07997 * 120.03007 * 180.27348 * 14 13 12 44 44 H 0.97000 * 119.99826 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.03476 * 180.02562 * 25 15 14 46 46 H 1.08002 * 119.96323 * 179.97438 * 26 25 15 47 47 H 1.09007 * 109.46942 * 299.99763 * 27 3 2 48 48 H 1.08993 * 109.47016 * 59.99691 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.1457 3.5689 -1.3077 7 6 3.6705 3.5701 -1.1823 8 6 4.0753 2.8862 0.1251 9 1 5.1616 2.8874 0.2147 10 7 3.4900 3.6129 1.2596 11 6 4.3429 4.7404 1.6590 12 6 3.7112 5.4606 2.8223 13 6 2.8383 6.5088 2.5933 14 6 2.2535 7.1671 3.6572 15 6 2.5515 6.7831 4.9582 16 8 1.9822 7.4316 6.0060 17 6 2.2233 6.9363 7.2366 18 1 2.9100 6.1122 7.3619 19 6 1.5898 7.4850 8.3412 20 7 0.7531 8.4886 8.1885 21 14 1.9246 6.7991 10.0462 22 1 3.3702 6.9329 10.3586 23 1 1.1293 7.5535 11.0481 24 1 1.5398 5.3655 10.0874 25 6 3.4328 5.7340 5.1849 26 6 4.0096 5.0756 4.1167 27 6 3.5648 1.4443 0.1257 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5874 -2.1492 34 1 0.5489 2.1251 -1.3969 35 1 1.8570 4.0562 -2.2389 36 1 1.7114 4.1081 -0.4658 37 1 4.0342 4.5977 -1.1820 38 1 4.1048 3.0309 -2.0240 39 1 3.3219 2.9933 2.0381 40 1 5.3244 4.3676 1.9517 41 1 4.4508 5.4290 0.8210 42 1 2.6101 6.8094 1.5815 43 1 1.5686 7.9826 3.4777 44 1 0.3102 8.8727 8.9613 45 1 3.6661 5.4328 6.1954 46 1 4.6954 4.2600 4.2924 47 1 3.8532 0.9570 1.0571 48 1 3.9993 0.9053 -0.7161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068592126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:58 Heat of formation + Delta-G solvation = -49.774739 kcal Electronic energy + Delta-G solvation = -24542.996440 eV Core-core repulsion = 21175.289039 eV Total energy + Delta-G solvation = -3367.707401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.82581 -40.17626 -38.45186 -36.15932 -34.37512 -33.81460 -31.83625 -31.71997 -30.14001 -29.05175 -27.42718 -25.45652 -24.31081 -23.59384 -23.18672 -21.91154 -21.31883 -19.92899 -19.80635 -18.84331 -16.87553 -16.68685 -16.32113 -16.27620 -15.77064 -15.62369 -15.47610 -15.34970 -15.22616 -14.80632 -14.35791 -14.19332 -14.11184 -13.85409 -13.61716 -13.43963 -13.20763 -13.09386 -12.82281 -12.70138 -12.41466 -12.30805 -12.26794 -12.15523 -12.13051 -11.95230 -11.78345 -11.53353 -11.24074 -11.16035 -10.79188 -10.76668 -10.70439 -9.75669 -9.19519 -8.86972 -8.46556 -6.14904 0.62477 0.70598 1.34577 1.45538 1.51075 2.18179 2.80482 3.12665 3.52040 3.54368 3.83169 3.90264 3.98694 4.07759 4.11420 4.23679 4.33636 4.37042 4.44202 4.52017 4.58422 4.62618 4.66436 4.69982 4.78279 4.79139 4.83509 4.88123 4.90240 5.05889 5.10508 5.12474 5.14709 5.16238 5.23671 5.24230 5.33248 5.37873 5.43889 5.49053 5.58390 5.60705 5.62040 5.73051 5.79866 5.84797 6.03675 6.21435 6.31789 6.58157 6.98043 7.79851 8.76718 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002808 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.674686 B = 9968.213260 C =10550.728563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.080 4.080 4 H 0.060 0.940 5 C -0.106 4.106 6 C -0.110 4.110 7 C -0.103 4.103 8 C 0.087 3.913 9 H 0.045 0.955 10 N -0.680 5.680 11 C 0.124 3.876 12 C -0.154 4.154 13 C -0.047 4.047 14 C -0.207 4.207 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.243 4.243 26 C -0.063 4.063 27 C -0.110 4.110 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.340 0.660 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.273 0.727 45 H 0.117 0.883 46 H 0.137 0.863 47 H 0.060 0.940 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 -16.833 -18.827 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.098 4.098 4 H 0.079 0.921 5 C -0.144 4.144 6 C -0.148 4.148 7 C -0.141 4.141 8 C -0.022 4.022 9 H 0.063 0.937 10 N -0.313 5.313 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.066 4.066 14 C -0.226 4.226 15 C 0.063 3.937 16 O -0.141 6.141 17 C -0.491 4.491 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.262 4.262 26 C -0.081 4.081 27 C -0.148 4.148 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.158 0.842 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.159 0.841 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.079 0.921 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.071 -16.127 -19.114 25.735 hybrid contribution 0.431 -0.130 1.593 1.655 sum 6.502 -16.257 -17.521 24.770 Atomic orbital electron populations 1.21816 0.96194 1.01540 1.01609 1.21563 0.95747 0.96311 1.01880 1.21044 0.95078 0.95428 0.98275 0.92121 1.21539 1.00160 0.95594 0.97086 1.21358 0.95774 0.96799 1.00884 1.21493 0.96321 1.00112 0.96175 1.21540 0.96141 0.93044 0.91495 0.93696 1.60542 1.48291 1.12128 1.10308 1.20628 0.92893 0.92826 0.94111 1.19634 1.02375 0.99349 0.94106 1.20809 0.94143 0.94096 0.97514 1.20458 1.06773 1.05259 0.90117 1.19930 0.92693 0.92069 0.88997 1.83942 1.65644 1.50371 1.14138 1.21786 1.27756 1.18470 0.81050 0.88152 1.26597 0.95119 0.96394 1.03961 1.70183 1.28418 1.24648 1.32790 0.84656 0.79172 0.78505 0.73931 1.18095 1.19622 1.18161 1.21220 1.03720 1.00919 1.00352 1.20936 0.97692 0.98014 0.91466 1.21721 0.95820 0.94962 1.02253 0.92411 0.92459 0.93762 0.91510 0.92344 0.91862 0.92568 0.92776 0.92502 0.92793 0.91180 0.84188 0.94098 0.90203 0.84140 0.87264 0.91851 0.86505 0.84514 0.92096 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.67 71.98 0.70 -1.64 16 2 C -0.12 -1.70 5.40 30.59 0.17 -1.53 16 3 C -0.08 -1.29 2.03 -10.79 -0.02 -1.31 16 4 H 0.06 1.27 7.48 -2.39 -0.02 1.25 16 5 C -0.11 -1.69 4.96 30.60 0.15 -1.54 16 6 C -0.11 -1.97 5.77 30.59 0.18 -1.79 16 7 C -0.10 -1.66 5.53 30.59 0.17 -1.49 16 8 C 0.09 1.43 2.82 44.90 0.13 1.56 16 9 H 0.05 0.71 7.80 -2.39 -0.02 0.69 16 10 N -0.68 -14.07 4.81 -495.66 -2.39 -16.45 16 11 C 0.12 2.79 5.61 85.56 0.48 3.27 16 12 C -0.15 -4.73 5.40 -19.83 -0.11 -4.84 16 13 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 14 C -0.21 -9.06 9.99 22.39 0.22 -8.83 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.39 9.76 -22.74 -0.22 -14.62 16 17 C -0.41 -24.53 9.49 67.92 0.64 -23.88 16 18 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 20 N -0.92 -57.44 13.67 21.61 0.30 -57.15 16 21 Si 1.02 43.26 29.55 68.60 2.03 45.28 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 C -0.24 -10.66 9.17 22.39 0.21 -10.45 16 26 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 27 C -0.11 -1.59 4.58 30.58 0.14 -1.45 16 28 H 0.06 0.84 6.57 -2.39 -0.02 0.83 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.93 6.56 -2.39 -0.02 0.91 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.29 7.60 -2.39 -0.02 1.27 16 37 H 0.05 0.93 7.45 -2.38 -0.02 0.91 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.34 7.32 8.18 -89.69 -0.73 6.59 16 40 H 0.04 0.84 8.00 -2.39 -0.02 0.82 16 41 H 0.08 1.70 7.37 -2.39 -0.02 1.69 16 42 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 46 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 47 H 0.06 0.88 8.12 -2.38 -0.02 0.86 16 48 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.20 374.65 4.01 -64.19 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.20 Total: 30.98 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 4.10 Total: -52.23 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -2.09 Total: -73.60 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.20 4.01 -64.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068592126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.411 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds