Wall clock time and date at job start Tue Mar 31 2020 09:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 C 1.53003 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46964 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00356 * 270.00175 * 5 4 3 7 7 O 1.21545 * 119.99951 * 3.92942 * 6 5 4 8 8 C 1.47887 * 120.00039 * 183.93166 * 6 5 4 9 9 C 1.39916 * 120.02353 * 315.91800 * 8 6 5 10 10 C 1.38330 * 120.35359 * 179.71736 * 9 8 6 11 11 C 1.37752 * 120.41515 * 0.56092 * 10 9 8 12 12 C 1.40747 * 120.03681 * 359.71635 * 11 10 9 13 13 C 1.41438 * 120.17720 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00117 * 150.48705 * 13 12 11 15 15 C 1.39938 * 119.99917 * 330.48402 * 13 12 11 16 16 N 1.30829 * 120.00126 * 168.03804 * 15 13 12 17 17 Si 1.86798 * 119.99966 * 348.03705 * 15 13 12 18 18 H 1.48496 * 109.47290 * 89.07038 * 17 15 13 19 19 H 1.48498 * 109.47034 * 209.06944 * 17 15 13 20 20 H 1.48500 * 109.47136 * 329.06854 * 17 15 13 21 21 C 1.38992 * 120.02451 * 136.19019 * 8 6 5 22 22 C 1.46510 * 120.00027 * 90.00449 * 5 4 3 23 23 H 1.08996 * 109.47238 * 179.33632 * 22 5 4 24 24 C 1.53003 * 109.46722 * 299.33503 * 22 5 4 25 25 C 1.53001 * 109.47079 * 59.32889 * 22 5 4 26 26 C 1.52998 * 109.46952 * 65.00376 * 25 22 5 27 27 H 1.09000 * 109.47282 * 300.00124 * 1 2 3 28 28 H 1.08999 * 109.47043 * 60.00348 * 1 2 3 29 29 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47439 * 239.99847 * 2 1 3 31 31 H 1.08999 * 109.47043 * 119.99652 * 2 1 3 32 32 H 1.09000 * 109.47255 * 59.99858 * 3 2 1 33 33 H 1.09006 * 109.47350 * 299.99625 * 3 2 1 34 34 H 1.09000 * 109.46909 * 60.00000 * 4 3 2 35 35 H 1.08999 * 109.47246 * 299.99881 * 4 3 2 36 36 H 1.07994 * 119.82313 * 359.97438 * 9 8 6 37 37 H 1.08003 * 119.79631 * 180.25839 * 10 9 8 38 38 H 1.08003 * 119.98542 * 179.74536 * 11 10 9 39 39 H 0.97001 * 120.00050 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.20328 * 359.97438 * 21 8 6 41 41 H 1.09001 * 109.46852 * 179.97438 * 24 22 5 42 42 H 1.09005 * 109.47043 * 299.99755 * 24 22 5 43 43 H 1.08997 * 109.47564 * 59.99741 * 24 22 5 44 44 H 1.08994 * 109.46884 * 185.00136 * 25 22 5 45 45 H 1.08996 * 109.47218 * 305.00450 * 25 22 5 46 46 H 1.09005 * 109.47136 * 59.99807 * 26 25 22 47 47 H 1.08990 * 109.47478 * 180.02562 * 26 25 22 48 48 H 1.09004 * 109.47409 * 300.00084 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2833 3.4585 -1.1674 7 8 4.0139 2.9110 -2.2186 8 6 4.8581 4.8211 -1.1694 9 6 4.3817 5.7832 -0.2723 10 6 4.9184 7.0581 -0.2643 11 6 5.9198 7.3988 -1.1467 12 6 6.4078 6.4459 -2.0605 13 6 7.4363 6.7923 -2.9675 14 1 8.1275 6.0381 -3.3139 15 6 7.5583 8.1122 -3.4161 16 7 8.6330 8.4871 -4.0613 17 14 6.1868 9.3388 -3.0939 18 1 6.4147 10.0038 -1.7859 19 1 6.1722 10.3595 -4.1723 20 1 4.8832 8.6280 -3.0673 21 6 5.8681 5.1485 -2.0664 22 6 4.3020 3.5152 1.2685 23 1 4.6704 4.5214 1.0690 24 6 2.9970 3.5981 2.0630 25 6 5.3441 2.7417 2.0789 26 6 6.6842 2.7655 1.3411 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 3.5935 5.5280 0.4205 37 1 4.5467 7.7926 0.4350 38 1 6.3310 8.3974 -1.1372 39 1 8.7174 9.4019 -4.3726 40 1 6.2362 4.4102 -2.7634 41 1 3.1784 4.1121 3.0069 42 1 2.2545 4.1491 1.4856 43 1 2.6285 2.5919 2.2625 44 1 5.4602 3.2058 3.0583 45 1 5.0156 1.7098 2.2024 46 1 7.0127 3.7975 1.2175 47 1 7.4265 2.2141 1.9181 48 1 6.5680 2.3015 0.3616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078842929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:46 Heat of formation + Delta-G solvation = -30.499682 kcal Electronic energy + Delta-G solvation = -25737.743271 eV Core-core repulsion = 22370.871699 eV Total energy + Delta-G solvation = -3366.871572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.15336 -37.58670 -36.73863 -35.20359 -33.67938 -32.29403 -30.99645 -30.17073 -29.80851 -28.67040 -25.42763 -24.23180 -23.70881 -22.42543 -21.22804 -20.96886 -20.63978 -18.95753 -17.78516 -16.36668 -16.04912 -15.70056 -15.21823 -15.18037 -14.67174 -14.26447 -13.86718 -13.81756 -13.52751 -13.33828 -13.18367 -12.94969 -12.79995 -12.68643 -12.52815 -12.25384 -12.07023 -11.80211 -11.64977 -11.46790 -11.25011 -11.18405 -11.05265 -10.98688 -10.81627 -10.81129 -10.57365 -10.45593 -10.32202 -9.88570 -9.71708 -9.45086 -8.98220 -8.40366 -7.86741 -7.69974 -7.00067 -4.58120 2.05202 2.48193 3.03881 3.17398 3.25037 3.28699 3.45689 3.91593 4.40680 4.76095 4.82487 4.88130 5.00586 5.04686 5.15535 5.21370 5.26990 5.40785 5.49717 5.54890 5.59364 5.62728 5.68347 5.73053 5.76289 5.83660 5.86940 5.91626 5.96125 6.01218 6.06418 6.09973 6.19070 6.23383 6.28596 6.35294 6.36916 6.49320 6.61373 6.69799 6.87744 6.99104 7.21913 7.37843 7.47573 7.71581 7.73823 7.94973 8.25442 8.50123 8.66724 8.70384 10.02154 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003878 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.009006 B = 7219.355029 C = 7474.563142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.566 3.434 7 O -0.545 6.545 8 C -0.094 4.094 9 C -0.229 4.229 10 C -0.078 4.078 11 C -0.233 4.233 12 C 0.088 3.912 13 C -0.438 4.438 14 H 0.093 0.907 15 C 0.080 3.920 16 N -0.808 5.808 17 Si 0.919 3.081 18 H -0.269 1.269 19 H -0.293 1.293 20 H -0.244 1.244 21 C -0.147 4.147 22 C 0.100 3.900 23 H 0.134 0.866 24 C -0.163 4.163 25 C -0.130 4.130 26 C -0.151 4.151 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.287 0.713 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 -9.631 12.687 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.179 4.179 4 C -0.006 4.006 5 N -0.334 5.334 6 C 0.357 3.643 7 O -0.423 6.423 8 C -0.097 4.097 9 C -0.248 4.248 10 C -0.097 4.097 11 C -0.252 4.252 12 C 0.085 3.915 13 C -0.467 4.467 14 H 0.111 0.889 15 C -0.138 4.138 16 N -0.432 5.432 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.221 1.221 20 H -0.167 1.167 21 C -0.167 4.167 22 C -0.002 4.002 23 H 0.151 0.849 24 C -0.221 4.221 25 C -0.168 4.168 26 C -0.208 4.208 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.699 -9.775 11.947 18.230 hybrid contribution -0.466 0.626 0.145 0.794 sum -10.165 -9.148 12.092 18.255 Atomic orbital electron populations 1.21753 0.95940 1.01299 1.01815 1.21450 0.95835 0.96795 1.01856 1.22168 0.95988 0.96830 1.02938 1.21357 0.93598 0.83198 1.02495 1.47869 1.66075 1.13539 1.05961 1.18895 0.76469 0.86216 0.82722 1.90707 1.52215 1.68035 1.31328 1.19383 0.99519 0.91857 0.98967 1.20487 1.06032 0.94424 1.03891 1.20504 0.96143 0.95179 0.97824 1.21219 1.03577 1.00117 1.00323 1.17672 0.91162 0.91147 0.91510 1.19547 1.10389 0.95211 1.21533 0.88929 1.26181 0.96160 0.98971 0.92525 1.69643 1.25510 1.19861 1.28200 0.86265 0.83114 0.79001 0.77000 1.19587 1.22072 1.16732 1.21090 0.98385 0.97717 0.99508 1.22045 0.94914 1.00057 0.83234 0.84856 1.22269 0.97757 1.02015 1.00081 1.21870 0.95737 1.00327 0.98909 1.21717 0.96117 1.02585 1.00381 0.92917 0.92715 0.92954 0.91926 0.92226 0.91353 0.91494 0.90393 0.90970 0.87500 0.88277 0.87742 0.90268 0.87371 0.91724 0.92228 0.92254 0.91199 0.92282 0.91990 0.93225 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.14 -1.64 5.26 -26.73 -0.14 -1.78 16 4 C 0.12 1.50 4.82 -4.04 -0.02 1.48 16 5 N -0.60 -9.13 1.85 -167.19 -0.31 -9.44 16 6 C 0.57 11.18 7.29 -12.31 -0.09 11.09 16 7 O -0.55 -12.41 16.58 5.33 0.09 -12.32 16 8 C -0.09 -1.99 5.26 -105.04 -0.55 -2.54 16 9 C -0.23 -4.39 7.32 -38.92 -0.28 -4.68 16 10 C -0.08 -1.57 10.01 -39.73 -0.40 -1.96 16 11 C -0.23 -5.35 7.06 -38.81 -0.27 -5.63 16 12 C 0.09 2.19 5.18 -106.87 -0.55 1.64 16 13 C -0.44 -11.70 9.61 -37.73 -0.36 -12.06 16 14 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 15 C 0.08 2.08 5.47 -17.34 -0.09 1.99 16 16 N -0.81 -21.30 13.93 55.55 0.77 -20.53 16 17 Si 0.92 20.60 24.37 -169.99 -4.14 16.45 16 18 H -0.27 -5.75 6.49 56.52 0.37 -5.39 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.24 -5.64 6.78 56.52 0.38 -5.26 16 21 C -0.15 -3.48 9.41 -38.44 -0.36 -3.84 16 22 C 0.10 1.30 1.82 -67.92 -0.12 1.18 16 23 H 0.13 1.99 3.65 -51.93 -0.19 1.80 16 24 C -0.16 -1.71 7.79 37.16 0.29 -1.42 16 25 C -0.13 -1.47 5.35 -26.73 -0.14 -1.61 16 26 C -0.15 -1.98 9.80 37.16 0.36 -1.62 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.74 5.44 -51.93 -0.28 0.46 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.14 7.48 -51.93 -0.39 0.75 16 35 H 0.07 0.77 6.31 -51.93 -0.33 0.45 16 36 H 0.11 1.76 5.55 -52.49 -0.29 1.47 16 37 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.11 2.39 4.04 -52.48 -0.21 2.18 16 39 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 40 H 0.11 2.61 8.06 -52.49 -0.42 2.18 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 43 H 0.06 0.56 6.15 -51.93 -0.32 0.24 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.61 6.45 -51.93 -0.33 0.27 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.82 7.75 -51.93 -0.40 0.41 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -28.19 368.78 -8.40 -36.59 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.83 Total: 5.75 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -2.53 Total: -22.05 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.46 Total: -29.97 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.14 Total: 16.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.19 -8.40 -36.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078842929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.088 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds