Wall clock time and date at job start Tue Mar 31 2020 09:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 C 1.53003 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46964 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00356 * 270.00175 * 5 4 3 7 7 O 1.21545 * 119.99951 * 3.92942 * 6 5 4 8 8 C 1.47887 * 120.00039 * 183.93166 * 6 5 4 9 9 C 1.39916 * 120.02353 * 315.91800 * 8 6 5 10 10 C 1.38330 * 120.35359 * 179.71736 * 9 8 6 11 11 C 1.37752 * 120.41515 * 0.56092 * 10 9 8 12 12 C 1.40747 * 120.03681 * 359.71635 * 11 10 9 13 13 C 1.41438 * 120.17720 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00117 * 150.48705 * 13 12 11 15 15 C 1.39938 * 119.99917 * 330.48402 * 13 12 11 16 16 N 1.30829 * 120.00126 * 168.03804 * 15 13 12 17 17 Si 1.86798 * 119.99966 * 348.03705 * 15 13 12 18 18 H 1.48496 * 109.47290 * 89.07038 * 17 15 13 19 19 H 1.48498 * 109.47034 * 209.06944 * 17 15 13 20 20 H 1.48500 * 109.47136 * 329.06854 * 17 15 13 21 21 C 1.38992 * 120.02451 * 136.19019 * 8 6 5 22 22 C 1.46510 * 120.00027 * 90.00449 * 5 4 3 23 23 H 1.08996 * 109.47238 * 179.33632 * 22 5 4 24 24 C 1.53003 * 109.46722 * 299.33503 * 22 5 4 25 25 C 1.53001 * 109.47079 * 59.32889 * 22 5 4 26 26 C 1.52998 * 109.46952 * 65.00376 * 25 22 5 27 27 H 1.09000 * 109.47282 * 300.00124 * 1 2 3 28 28 H 1.08999 * 109.47043 * 60.00348 * 1 2 3 29 29 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47439 * 239.99847 * 2 1 3 31 31 H 1.08999 * 109.47043 * 119.99652 * 2 1 3 32 32 H 1.09000 * 109.47255 * 59.99858 * 3 2 1 33 33 H 1.09006 * 109.47350 * 299.99625 * 3 2 1 34 34 H 1.09000 * 109.46909 * 60.00000 * 4 3 2 35 35 H 1.08999 * 109.47246 * 299.99881 * 4 3 2 36 36 H 1.07994 * 119.82313 * 359.97438 * 9 8 6 37 37 H 1.08003 * 119.79631 * 180.25839 * 10 9 8 38 38 H 1.08003 * 119.98542 * 179.74536 * 11 10 9 39 39 H 0.97001 * 120.00050 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.20328 * 359.97438 * 21 8 6 41 41 H 1.09001 * 109.46852 * 179.97438 * 24 22 5 42 42 H 1.09005 * 109.47043 * 299.99755 * 24 22 5 43 43 H 1.08997 * 109.47564 * 59.99741 * 24 22 5 44 44 H 1.08994 * 109.46884 * 185.00136 * 25 22 5 45 45 H 1.08996 * 109.47218 * 305.00450 * 25 22 5 46 46 H 1.09005 * 109.47136 * 59.99807 * 26 25 22 47 47 H 1.08990 * 109.47478 * 180.02562 * 26 25 22 48 48 H 1.09004 * 109.47409 * 300.00084 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2833 3.4585 -1.1674 7 8 4.0139 2.9110 -2.2186 8 6 4.8581 4.8211 -1.1694 9 6 4.3817 5.7832 -0.2723 10 6 4.9184 7.0581 -0.2643 11 6 5.9198 7.3988 -1.1467 12 6 6.4078 6.4459 -2.0605 13 6 7.4363 6.7923 -2.9675 14 1 8.1275 6.0381 -3.3139 15 6 7.5583 8.1122 -3.4161 16 7 8.6330 8.4871 -4.0613 17 14 6.1868 9.3388 -3.0939 18 1 6.4147 10.0038 -1.7859 19 1 6.1722 10.3595 -4.1723 20 1 4.8832 8.6280 -3.0673 21 6 5.8681 5.1485 -2.0664 22 6 4.3020 3.5152 1.2685 23 1 4.6704 4.5214 1.0690 24 6 2.9970 3.5981 2.0630 25 6 5.3441 2.7417 2.0789 26 6 6.6842 2.7655 1.3411 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 3.5935 5.5280 0.4205 37 1 4.5467 7.7926 0.4350 38 1 6.3310 8.3974 -1.1372 39 1 8.7174 9.4019 -4.3726 40 1 6.2362 4.4102 -2.7634 41 1 3.1784 4.1121 3.0069 42 1 2.2545 4.1491 1.4856 43 1 2.6285 2.5919 2.2625 44 1 5.4602 3.2058 3.0583 45 1 5.0156 1.7098 2.2024 46 1 7.0127 3.7975 1.2175 47 1 7.4265 2.2141 1.9181 48 1 6.5680 2.3015 0.3616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078842929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:45 Heat of formation + Delta-G solvation = -44.653688 kcal Electronic energy + Delta-G solvation = -25738.357034 eV Core-core repulsion = 22370.871699 eV Total energy + Delta-G solvation = -3367.485336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58332 -39.26062 -38.13948 -36.15971 -35.49826 -33.42570 -32.69803 -31.87937 -30.81295 -29.78484 -27.24752 -25.54126 -24.65901 -23.80708 -22.65872 -22.15177 -21.95588 -20.41099 -19.31060 -18.02208 -17.75515 -17.01807 -16.66716 -16.34370 -16.09977 -15.67462 -15.38289 -14.84846 -14.70543 -14.62008 -14.45832 -14.41918 -14.23141 -13.86228 -13.79549 -13.56615 -13.22849 -13.17352 -12.90411 -12.76122 -12.67288 -12.44126 -12.32854 -12.13169 -12.01810 -11.85546 -11.77551 -11.72533 -11.64791 -11.41128 -11.29336 -11.17949 -10.62529 -9.76101 -9.58735 -9.43025 -8.91688 -6.58232 0.30857 0.70897 1.23095 1.40093 1.47046 1.78004 2.03949 2.10036 2.57958 3.37929 3.59642 3.82512 3.95756 4.02091 4.19389 4.22096 4.24386 4.31013 4.34845 4.38019 4.52916 4.56647 4.61276 4.67062 4.74394 4.79405 4.83935 4.88822 4.90506 4.95002 4.95912 5.00557 5.11837 5.12494 5.15644 5.26042 5.29359 5.34631 5.39750 5.40733 5.41767 5.51352 5.62194 5.67122 5.74858 5.81709 6.08609 6.27016 6.42620 6.62828 6.72058 7.17520 8.17283 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003878 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.009006 B = 7219.355029 C = 7474.563142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.132 4.132 4 C 0.113 3.887 5 N -0.587 5.587 6 C 0.559 3.441 7 O -0.588 6.588 8 C -0.098 4.098 9 C -0.194 4.194 10 C -0.075 4.075 11 C -0.236 4.236 12 C 0.073 3.927 13 C -0.483 4.483 14 H 0.050 0.950 15 C 0.042 3.958 16 N -0.854 5.854 17 Si 0.973 3.027 18 H -0.243 1.243 19 H -0.281 1.281 20 H -0.254 1.254 21 C -0.174 4.174 22 C 0.092 3.908 23 H 0.114 0.886 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.151 4.151 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.295 0.705 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.039 0.961 47 H 0.067 0.933 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -9.598 17.444 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.170 4.170 4 C -0.009 4.009 5 N -0.317 5.317 6 C 0.349 3.651 7 O -0.470 6.470 8 C -0.101 4.101 9 C -0.213 4.213 10 C -0.093 4.093 11 C -0.255 4.255 12 C 0.071 3.929 13 C -0.513 4.513 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.480 5.480 17 Si 0.797 3.203 18 H -0.168 1.168 19 H -0.209 1.209 20 H -0.178 1.178 21 C -0.195 4.195 22 C -0.010 4.010 23 H 0.131 0.869 24 C -0.216 4.216 25 C -0.161 4.161 26 C -0.209 4.209 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.967 -9.760 16.764 23.334 hybrid contribution 0.464 0.385 -1.148 1.296 sum -12.503 -9.376 15.617 22.093 Atomic orbital electron populations 1.21748 0.95169 1.02120 1.01697 1.21442 0.96480 0.95290 1.02444 1.22086 0.94556 0.98215 1.02142 1.21573 0.94720 0.81665 1.02931 1.47927 1.64108 1.14232 1.05451 1.18774 0.76717 0.85926 0.83640 1.90685 1.54369 1.68727 1.33204 1.19637 0.98401 0.93549 0.98464 1.21010 1.04922 0.93327 1.02063 1.21009 0.94638 0.96283 0.97381 1.21417 1.04132 0.99775 1.00222 1.17729 0.91166 0.92117 0.91894 1.19490 1.11909 0.95363 1.24516 0.93219 1.26909 0.98139 1.00096 0.92057 1.69681 1.27194 1.20861 1.30267 0.85440 0.79429 0.77001 0.78441 1.16786 1.20853 1.17841 1.21008 1.00250 0.97341 1.00864 1.22253 0.97306 0.98974 0.82465 0.86901 1.22244 0.95475 1.03408 1.00449 1.21867 0.93454 1.01510 0.99258 1.21716 0.98344 1.01133 0.99681 0.91881 0.93998 0.91719 0.92996 0.90014 0.89553 0.94754 0.92829 0.87640 0.83491 0.83426 0.87294 0.89439 0.90015 0.89102 0.92837 0.90666 0.88417 0.90357 0.94161 0.91392 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.97 5.93 30.59 0.18 -1.78 16 3 C -0.13 -2.76 5.26 30.59 0.16 -2.60 16 4 C 0.11 2.70 4.82 86.38 0.42 3.12 16 5 N -0.59 -16.79 1.85 -801.15 -1.48 -18.28 16 6 C 0.56 22.30 7.29 86.80 0.63 22.94 16 7 O -0.59 -28.04 16.58 -3.86 -0.06 -28.10 16 8 C -0.10 -4.13 5.26 -20.14 -0.11 -4.24 16 9 C -0.19 -6.85 7.32 22.70 0.17 -6.69 16 10 C -0.08 -2.73 10.01 22.18 0.22 -2.51 16 11 C -0.24 -10.60 7.06 22.77 0.16 -10.44 16 12 C 0.07 3.82 5.18 -21.32 -0.11 3.71 16 13 C -0.48 -27.98 9.61 23.47 0.23 -27.75 16 14 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 15 C 0.04 2.27 5.47 85.25 0.47 2.74 16 16 N -0.85 -47.66 13.93 21.82 0.30 -47.35 16 17 Si 0.97 42.56 24.37 68.60 1.67 44.23 16 18 H -0.24 -9.52 6.49 99.48 0.65 -8.87 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.25 -11.43 6.78 99.48 0.67 -10.75 16 21 C -0.17 -8.78 9.41 23.01 0.22 -8.57 16 22 C 0.09 2.02 1.82 44.99 0.08 2.10 16 23 H 0.11 2.94 3.65 -2.39 -0.01 2.93 16 24 C -0.16 -2.40 7.79 71.98 0.56 -1.84 16 25 C -0.12 -2.25 5.35 30.59 0.16 -2.09 16 26 C -0.15 -3.76 9.80 71.98 0.71 -3.06 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.50 5.44 -2.39 -0.01 1.49 16 33 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.05 1.57 7.48 -2.39 -0.02 1.55 16 35 H 0.11 1.84 6.31 -2.39 -0.02 1.82 16 36 H 0.15 4.07 5.55 -2.91 -0.02 4.05 16 37 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.11 4.78 4.04 -2.91 -0.01 4.77 16 39 H 0.30 14.72 8.30 -92.71 -0.77 13.95 16 40 H 0.08 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.91 7.70 -2.38 -0.02 0.89 16 43 H 0.07 0.95 6.15 -2.39 -0.01 0.93 16 44 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.18 6.45 -2.39 -0.02 1.17 16 46 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.03 0.81 7.75 -2.38 -0.02 0.79 16 Total: -1.00 -68.80 368.78 6.13 -62.67 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.84 Total: 25.31 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 4.86 Total: -38.49 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -1.18 Total: -65.63 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.67 Total: 44.23 kcal Total: -68.80 6.13 -62.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078842929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.017 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds