Wall clock time and date at job start Tue Mar 31 2020 09:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00246 * 269.99904 * 5 4 3 7 7 O 1.21548 * 120.00210 * 318.30740 * 6 5 4 8 8 C 1.47885 * 120.00115 * 138.30494 * 6 5 4 9 9 C 1.39924 * 120.02250 * 60.64107 * 8 6 5 10 10 C 1.38333 * 120.35761 * 179.71774 * 9 8 6 11 11 C 1.37746 * 120.41004 * 0.55806 * 10 9 8 12 12 C 1.40753 * 120.04171 * 359.71848 * 11 10 9 13 13 C 1.41436 * 120.18249 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00239 * 140.06089 * 13 12 11 15 15 C 1.39936 * 120.00110 * 320.07337 * 13 12 11 16 16 N 1.30828 * 120.00592 * 166.31001 * 15 13 12 17 17 Si 1.86801 * 119.99757 * 346.30313 * 15 13 12 18 18 H 1.48498 * 109.47313 * 85.65665 * 17 15 13 19 19 H 1.48506 * 109.47375 * 205.65965 * 17 15 13 20 20 H 1.48498 * 109.47204 * 325.65847 * 17 15 13 21 21 C 1.38988 * 120.02874 * 240.91531 * 8 6 5 22 22 C 1.46503 * 119.99949 * 90.00694 * 5 4 3 23 23 H 1.09000 * 109.47209 * 3.78205 * 22 5 4 24 24 C 1.53003 * 109.46879 * 243.78547 * 22 5 4 25 25 C 1.53002 * 109.47333 * 123.78406 * 22 5 4 26 26 C 1.52995 * 109.47010 * 245.48980 * 25 22 5 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47005 * 299.99091 * 1 2 3 29 29 H 1.08995 * 109.47218 * 59.99513 * 1 2 3 30 30 H 1.08997 * 109.46801 * 240.00255 * 2 1 3 31 31 H 1.08995 * 109.47218 * 120.00487 * 2 1 3 32 32 H 1.09005 * 109.47302 * 60.00344 * 3 2 1 33 33 H 1.08995 * 109.47450 * 300.00345 * 3 2 1 34 34 H 1.08997 * 109.46801 * 60.00255 * 4 3 2 35 35 H 1.08995 * 109.47218 * 300.00487 * 4 3 2 36 36 H 1.07997 * 119.82069 * 359.97382 * 9 8 6 37 37 H 1.07994 * 119.79397 * 180.25664 * 10 9 8 38 38 H 1.07997 * 119.98546 * 179.74649 * 11 10 9 39 39 H 0.97002 * 120.00411 * 179.97438 * 16 15 13 40 40 H 1.08007 * 120.20192 * 359.97438 * 21 8 6 41 41 H 1.09002 * 109.47278 * 328.79365 * 24 22 5 42 42 H 1.08995 * 109.47285 * 88.79476 * 24 22 5 43 43 H 1.09005 * 109.46833 * 208.79893 * 24 22 5 44 44 H 1.09002 * 109.47009 * 125.48798 * 25 22 5 45 45 H 1.09004 * 109.46998 * 5.49003 * 25 22 5 46 46 H 1.09002 * 109.47383 * 60.00047 * 26 25 22 47 47 H 1.08997 * 109.46948 * 179.97438 * 26 25 22 48 48 H 1.08997 * 109.47447 * 300.00223 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2824 3.4598 -1.1669 7 8 4.8166 2.8717 -2.0869 8 6 3.8784 4.8732 -1.3281 9 6 4.4256 5.8569 -0.4970 10 6 4.0570 7.1819 -0.6455 11 6 3.1389 7.5468 -1.6053 12 6 2.5733 6.5705 -2.4468 13 6 1.6307 6.9420 -3.4336 14 1 1.6607 6.4809 -4.4098 15 6 0.6593 7.9071 -3.1453 16 7 -0.0350 8.4463 -4.1142 17 14 0.3539 8.4256 -1.3769 18 1 1.3083 9.5005 -1.0043 19 1 -1.0365 8.9294 -1.2417 20 1 0.5471 7.2590 -0.4786 21 6 2.9506 5.2248 -2.3015 22 6 4.3031 3.5135 1.2690 23 1 4.1320 2.8244 2.0961 24 6 3.3519 4.7054 1.3933 25 6 5.7500 4.0093 1.3093 26 6 6.5118 3.2705 2.4114 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9284 0.8890 36 1 5.1427 5.5808 0.2619 37 1 4.4882 7.9342 -0.0018 38 1 2.8530 8.5828 -1.7126 39 1 -0.7086 9.1151 -3.9143 40 1 2.5227 4.4682 -2.9426 41 1 3.1365 5.1034 0.4017 42 1 2.4237 4.3820 1.8644 43 1 3.8179 5.4801 2.0024 44 1 5.7617 5.0798 1.5143 45 1 6.2264 3.8183 0.3476 46 1 6.5001 2.2000 2.2064 47 1 7.5426 3.6234 2.4397 48 1 6.0354 3.4615 3.3730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078842932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:52 Heat of formation + Delta-G solvation = -4.892488 kcal Electronic energy + Delta-G solvation = -26021.829811 eV Core-core repulsion = 22656.068650 eV Total energy + Delta-G solvation = -3365.761161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.43787 -37.57909 -36.73677 -35.46487 -33.59450 -32.73676 -31.07745 -30.15784 -29.33083 -28.33449 -25.40142 -24.17366 -23.91104 -22.18046 -21.76530 -21.04281 -20.69068 -18.78527 -17.30210 -16.27682 -16.15622 -15.84778 -15.19500 -15.02127 -14.91790 -14.04743 -13.98361 -13.87803 -13.59742 -13.36850 -13.20982 -12.95776 -12.83400 -12.75551 -12.58980 -12.10574 -12.00817 -11.96060 -11.51327 -11.36634 -11.31178 -11.22132 -11.07388 -11.03630 -10.82723 -10.65279 -10.60714 -10.52341 -10.06855 -9.91329 -9.69397 -9.42748 -9.09566 -8.21614 -7.88992 -7.40784 -6.88173 -4.51263 2.08137 2.48691 2.90371 3.09268 3.16816 3.24835 3.33889 3.97224 4.43864 4.70475 4.86597 4.88653 5.01935 5.04351 5.09565 5.17882 5.22522 5.37543 5.46969 5.55114 5.59163 5.62028 5.69136 5.76112 5.79214 5.83727 5.90324 5.92477 6.04612 6.06527 6.11717 6.13256 6.18929 6.22992 6.25810 6.36593 6.41878 6.56638 6.65658 6.84411 6.99045 7.06359 7.25735 7.36487 7.45682 7.70178 7.78022 7.93169 8.34735 8.43545 8.55304 8.78487 10.15550 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.005332 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.773801 B = 5250.531758 C = 6381.085246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.124 3.876 5 N -0.644 5.644 6 C 0.592 3.408 7 O -0.521 6.521 8 C -0.113 4.113 9 C -0.204 4.204 10 C -0.099 4.099 11 C -0.210 4.210 12 C 0.087 3.913 13 C -0.460 4.460 14 H 0.092 0.908 15 C 0.086 3.914 16 N -0.819 5.819 17 Si 0.904 3.096 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.250 1.250 21 C -0.146 4.146 22 C 0.156 3.844 23 H 0.082 0.918 24 C -0.212 4.212 25 C -0.148 4.148 26 C -0.148 4.148 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.283 0.717 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -10.062 13.872 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.179 4.179 4 C 0.002 3.998 5 N -0.380 5.380 6 C 0.383 3.617 7 O -0.396 6.396 8 C -0.116 4.116 9 C -0.223 4.223 10 C -0.117 4.117 11 C -0.229 4.229 12 C 0.084 3.916 13 C -0.489 4.489 14 H 0.110 0.890 15 C -0.131 4.131 16 N -0.445 5.445 17 Si 0.730 3.270 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.174 1.174 21 C -0.166 4.166 22 C 0.053 3.947 23 H 0.101 0.899 24 C -0.269 4.269 25 C -0.186 4.186 26 C -0.205 4.205 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.409 -10.233 13.209 17.281 hybrid contribution -0.386 0.415 0.787 0.970 sum 4.022 -9.818 13.995 17.563 Atomic orbital electron populations 1.21760 0.95762 1.01308 1.02115 1.21438 0.96035 0.96539 1.01795 1.22110 0.95905 0.96837 1.03077 1.21387 0.93333 0.82468 1.02651 1.47654 1.71172 1.13714 1.05481 1.18758 0.74822 0.87116 0.81024 1.90686 1.37150 1.69270 1.42462 1.19597 1.00746 0.91763 0.99533 1.21075 1.05815 0.92791 1.02642 1.20573 0.98119 0.94953 0.98097 1.21404 1.01320 0.98675 1.01536 1.17663 0.92126 0.90242 0.91548 1.19364 1.11151 1.18654 0.99744 0.89022 1.26007 0.94827 0.92959 0.99323 1.69661 1.19235 1.21365 1.34203 0.86427 0.76882 0.80627 0.83075 1.19072 1.21580 1.17376 1.21197 1.00718 0.96082 0.98626 1.21035 0.94100 0.94596 0.84985 0.89943 1.23513 0.98526 0.97482 1.07380 1.22458 0.95373 1.00642 1.00077 1.21823 1.00028 1.00322 0.98343 0.92960 0.92810 0.92497 0.91965 0.92196 0.91640 0.91453 0.90426 0.91262 0.85994 0.88149 0.87523 0.90607 0.87592 0.85848 0.93700 0.92147 0.89979 0.91144 0.92868 0.92726 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.14 -1.74 5.54 -26.73 -0.15 -1.89 16 4 C 0.12 1.61 5.60 -4.04 -0.02 1.59 16 5 N -0.64 -9.87 2.39 -167.20 -0.40 -10.27 16 6 C 0.59 11.47 5.35 -12.31 -0.07 11.41 16 7 O -0.52 -11.62 17.17 5.32 0.09 -11.53 16 8 C -0.11 -2.34 4.06 -105.04 -0.43 -2.77 16 9 C -0.20 -3.84 5.81 -38.92 -0.23 -4.07 16 10 C -0.10 -1.96 10.00 -39.73 -0.40 -2.35 16 11 C -0.21 -4.78 7.29 -38.81 -0.28 -5.06 16 12 C 0.09 2.15 4.86 -106.87 -0.52 1.63 16 13 C -0.46 -12.35 9.54 -37.73 -0.36 -12.71 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.09 2.23 5.42 -17.34 -0.09 2.14 16 16 N -0.82 -21.93 13.93 55.55 0.77 -21.16 16 17 Si 0.90 20.27 24.94 -169.99 -4.24 16.03 16 18 H -0.27 -5.72 6.48 56.52 0.37 -5.35 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.25 -5.67 7.11 56.52 0.40 -5.26 16 21 C -0.15 -3.41 9.53 -38.44 -0.37 -3.78 16 22 C 0.16 2.03 2.94 -67.93 -0.20 1.83 16 23 H 0.08 0.90 7.23 -51.93 -0.38 0.52 16 24 C -0.21 -3.05 7.97 37.16 0.30 -2.76 16 25 C -0.15 -1.80 4.22 -26.73 -0.11 -1.91 16 26 C -0.15 -1.42 9.60 37.16 0.36 -1.06 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.10 7.50 -51.93 -0.39 0.71 16 35 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 36 H 0.12 1.96 2.83 -52.49 -0.15 1.81 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.11 2.44 5.52 -52.49 -0.29 2.15 16 39 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 40 H 0.11 2.48 8.06 -52.48 -0.42 2.06 16 41 H 0.12 2.21 3.00 -61.75 -0.19 2.02 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.78 7.27 -51.93 -0.38 0.40 16 44 H 0.08 0.97 5.52 -51.93 -0.29 0.69 16 45 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -28.35 368.42 -8.49 -36.85 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.91 Total: 6.80 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.36 Total: -22.27 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.37 Total: -31.43 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.24 Total: 16.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.35 -8.49 -36.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078842932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.953 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds