Wall clock time and date at job start Tue Mar 31 2020 09:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00246 * 269.99904 * 5 4 3 7 7 O 1.21548 * 120.00210 * 318.30740 * 6 5 4 8 8 C 1.47885 * 120.00115 * 138.30494 * 6 5 4 9 9 C 1.39924 * 120.02250 * 60.64107 * 8 6 5 10 10 C 1.38333 * 120.35761 * 179.71774 * 9 8 6 11 11 C 1.37746 * 120.41004 * 0.55806 * 10 9 8 12 12 C 1.40753 * 120.04171 * 359.71848 * 11 10 9 13 13 C 1.41436 * 120.18249 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00239 * 140.06089 * 13 12 11 15 15 C 1.39936 * 120.00110 * 320.07337 * 13 12 11 16 16 N 1.30828 * 120.00592 * 166.31001 * 15 13 12 17 17 Si 1.86801 * 119.99757 * 346.30313 * 15 13 12 18 18 H 1.48498 * 109.47313 * 85.65665 * 17 15 13 19 19 H 1.48506 * 109.47375 * 205.65965 * 17 15 13 20 20 H 1.48498 * 109.47204 * 325.65847 * 17 15 13 21 21 C 1.38988 * 120.02874 * 240.91531 * 8 6 5 22 22 C 1.46503 * 119.99949 * 90.00694 * 5 4 3 23 23 H 1.09000 * 109.47209 * 3.78205 * 22 5 4 24 24 C 1.53003 * 109.46879 * 243.78547 * 22 5 4 25 25 C 1.53002 * 109.47333 * 123.78406 * 22 5 4 26 26 C 1.52995 * 109.47010 * 245.48980 * 25 22 5 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47005 * 299.99091 * 1 2 3 29 29 H 1.08995 * 109.47218 * 59.99513 * 1 2 3 30 30 H 1.08997 * 109.46801 * 240.00255 * 2 1 3 31 31 H 1.08995 * 109.47218 * 120.00487 * 2 1 3 32 32 H 1.09005 * 109.47302 * 60.00344 * 3 2 1 33 33 H 1.08995 * 109.47450 * 300.00345 * 3 2 1 34 34 H 1.08997 * 109.46801 * 60.00255 * 4 3 2 35 35 H 1.08995 * 109.47218 * 300.00487 * 4 3 2 36 36 H 1.07997 * 119.82069 * 359.97382 * 9 8 6 37 37 H 1.07994 * 119.79397 * 180.25664 * 10 9 8 38 38 H 1.07997 * 119.98546 * 179.74649 * 11 10 9 39 39 H 0.97002 * 120.00411 * 179.97438 * 16 15 13 40 40 H 1.08007 * 120.20192 * 359.97438 * 21 8 6 41 41 H 1.09002 * 109.47278 * 328.79365 * 24 22 5 42 42 H 1.08995 * 109.47285 * 88.79476 * 24 22 5 43 43 H 1.09005 * 109.46833 * 208.79893 * 24 22 5 44 44 H 1.09002 * 109.47009 * 125.48798 * 25 22 5 45 45 H 1.09004 * 109.46998 * 5.49003 * 25 22 5 46 46 H 1.09002 * 109.47383 * 60.00047 * 26 25 22 47 47 H 1.08997 * 109.46948 * 179.97438 * 26 25 22 48 48 H 1.08997 * 109.47447 * 300.00223 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2824 3.4598 -1.1669 7 8 4.8166 2.8717 -2.0869 8 6 3.8784 4.8732 -1.3281 9 6 4.4256 5.8569 -0.4970 10 6 4.0570 7.1819 -0.6455 11 6 3.1389 7.5468 -1.6053 12 6 2.5733 6.5705 -2.4468 13 6 1.6307 6.9420 -3.4336 14 1 1.6607 6.4809 -4.4098 15 6 0.6593 7.9071 -3.1453 16 7 -0.0350 8.4463 -4.1142 17 14 0.3539 8.4256 -1.3769 18 1 1.3083 9.5005 -1.0043 19 1 -1.0365 8.9294 -1.2417 20 1 0.5471 7.2590 -0.4786 21 6 2.9506 5.2248 -2.3015 22 6 4.3031 3.5135 1.2690 23 1 4.1320 2.8244 2.0961 24 6 3.3519 4.7054 1.3933 25 6 5.7500 4.0093 1.3093 26 6 6.5118 3.2705 2.4114 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9284 0.8890 36 1 5.1427 5.5808 0.2619 37 1 4.4882 7.9342 -0.0018 38 1 2.8530 8.5828 -1.7126 39 1 -0.7086 9.1151 -3.9143 40 1 2.5227 4.4682 -2.9426 41 1 3.1365 5.1034 0.4017 42 1 2.4237 4.3820 1.8644 43 1 3.8179 5.4801 2.0024 44 1 5.7617 5.0798 1.5143 45 1 6.2264 3.8183 0.3476 46 1 6.5001 2.2000 2.2064 47 1 7.5426 3.6234 2.4397 48 1 6.0354 3.4615 3.3730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078842932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:50 Heat of formation + Delta-G solvation = -19.565886 kcal Electronic energy + Delta-G solvation = -26022.466097 eV Core-core repulsion = 22656.068650 eV Total energy + Delta-G solvation = -3366.397447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.87922 -39.25767 -38.09269 -36.49418 -35.41943 -33.79278 -32.72176 -31.85744 -30.46615 -29.45518 -27.23689 -25.51611 -24.87294 -23.41458 -23.16513 -22.37224 -21.98129 -20.40704 -18.89048 -17.92701 -17.44083 -17.25476 -16.62836 -16.54231 -16.16836 -15.61690 -15.23859 -15.04014 -14.82321 -14.74779 -14.50676 -14.45529 -14.21910 -13.85459 -13.82526 -13.55198 -13.29901 -13.01142 -12.99126 -12.80624 -12.52187 -12.45751 -12.37272 -12.17230 -12.05337 -11.87797 -11.81484 -11.60171 -11.49684 -11.48459 -11.26044 -11.13317 -10.81452 -9.67572 -9.44554 -9.12967 -8.81737 -6.53253 0.36666 0.73526 1.26693 1.33367 1.39271 1.48512 2.04972 2.13939 2.59672 3.33232 3.56409 3.82723 3.93831 3.99694 4.10555 4.12192 4.20741 4.26479 4.37249 4.42599 4.54261 4.60254 4.64839 4.65395 4.74390 4.78504 4.83367 4.87311 4.88547 4.94137 4.97590 5.04930 5.09276 5.17324 5.20201 5.23705 5.26030 5.33309 5.39490 5.43254 5.44265 5.54765 5.67095 5.72224 5.84611 5.88856 6.12554 6.32931 6.39583 6.66826 6.79767 6.95971 8.28348 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.005332 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.773801 B = 5250.531758 C = 6381.085246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.121 3.879 5 N -0.635 5.635 6 C 0.592 3.408 7 O -0.562 6.562 8 C -0.116 4.116 9 C -0.167 4.167 10 C -0.098 4.098 11 C -0.211 4.211 12 C 0.068 3.932 13 C -0.501 4.501 14 H 0.045 0.955 15 C 0.046 3.954 16 N -0.868 5.868 17 Si 0.960 3.040 18 H -0.243 1.243 19 H -0.277 1.277 20 H -0.254 1.254 21 C -0.169 4.169 22 C 0.151 3.849 23 H 0.117 0.883 24 C -0.213 4.213 25 C -0.148 4.148 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.108 0.892 39 H 0.291 0.709 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.128 -10.579 19.326 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.173 4.173 4 C -0.001 4.001 5 N -0.370 5.370 6 C 0.383 3.617 7 O -0.440 6.440 8 C -0.119 4.119 9 C -0.186 4.186 10 C -0.115 4.115 11 C -0.231 4.231 12 C 0.066 3.934 13 C -0.532 4.532 14 H 0.063 0.937 15 C -0.166 4.166 16 N -0.496 5.496 17 Si 0.782 3.218 18 H -0.167 1.167 19 H -0.203 1.203 20 H -0.178 1.178 21 C -0.189 4.189 22 C 0.049 3.951 23 H 0.135 0.865 24 C -0.270 4.270 25 C -0.186 4.186 26 C -0.199 4.199 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.177 0.823 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.225 -10.762 18.694 22.451 hybrid contribution -0.778 0.397 -0.795 1.181 sum 5.447 -10.364 17.899 21.389 Atomic orbital electron populations 1.21772 0.95667 1.02159 1.01451 1.21419 0.96083 0.94926 1.02866 1.22045 0.95520 0.98232 1.01521 1.21607 0.93512 0.81212 1.03749 1.47746 1.69601 1.14592 1.05037 1.18615 0.74657 0.86544 0.81914 1.90670 1.39354 1.69756 1.44172 1.19842 0.99751 0.93581 0.98754 1.21610 1.03788 0.91987 1.01184 1.21041 0.96707 0.96277 0.97509 1.21533 1.01742 0.98173 1.01634 1.17680 0.92397 0.91190 0.92126 1.19301 1.14080 1.20783 0.99039 0.93723 1.26754 0.93926 0.92621 1.03260 1.69713 1.20725 1.22990 1.36133 0.85573 0.77808 0.80505 0.77914 1.16724 1.20342 1.17806 1.21124 1.02434 0.95467 0.99856 1.21379 0.94416 0.94894 0.84450 0.86466 1.23425 0.99684 0.98594 1.05280 1.22440 0.94702 1.01564 0.99915 1.21780 1.00158 0.99981 0.98014 0.91363 0.92322 0.94357 0.92368 0.89579 0.90897 0.95261 0.92153 0.87259 0.82275 0.83499 0.87454 0.89891 0.89919 0.89714 0.92849 0.89818 0.89077 0.93763 0.92739 0.92123 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.91 71.98 0.71 -2.11 16 2 C -0.11 -2.11 5.93 30.59 0.18 -1.93 16 3 C -0.13 -3.18 5.54 30.59 0.17 -3.01 16 4 C 0.12 2.88 5.60 86.38 0.48 3.37 16 5 N -0.64 -18.18 2.39 -801.16 -1.92 -20.09 16 6 C 0.59 22.91 5.35 86.80 0.46 23.37 16 7 O -0.56 -25.76 17.17 -3.87 -0.07 -25.83 16 8 C -0.12 -4.80 4.06 -20.13 -0.08 -4.88 16 9 C -0.17 -5.80 5.81 22.70 0.13 -5.67 16 10 C -0.10 -3.50 10.00 22.18 0.22 -3.28 16 11 C -0.21 -9.45 7.29 22.77 0.17 -9.29 16 12 C 0.07 3.53 4.86 -21.32 -0.10 3.42 16 13 C -0.50 -29.25 9.54 23.47 0.22 -29.02 16 14 H 0.04 2.89 8.06 -2.91 -0.02 2.86 16 15 C 0.05 2.53 5.42 85.25 0.46 2.99 16 16 N -0.87 -49.33 13.93 21.82 0.30 -49.03 16 17 Si 0.96 42.08 24.94 68.60 1.71 43.79 16 18 H -0.24 -9.70 6.48 99.48 0.64 -9.06 16 19 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.25 -11.16 7.11 99.48 0.71 -10.45 16 21 C -0.17 -8.34 9.53 23.01 0.22 -8.12 16 22 C 0.15 3.24 2.94 44.99 0.13 3.37 16 23 H 0.12 1.82 7.23 -2.39 -0.02 1.80 16 24 C -0.21 -5.19 7.97 71.98 0.57 -4.62 16 25 C -0.15 -2.93 4.22 30.59 0.13 -2.80 16 26 C -0.14 -1.98 9.60 71.98 0.69 -1.29 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.68 7.50 -2.39 -0.02 1.66 16 35 H 0.11 1.78 7.89 -2.39 -0.02 1.76 16 36 H 0.16 4.36 2.83 -2.91 -0.01 4.35 16 37 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.11 4.76 5.52 -2.91 -0.02 4.75 16 39 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 40 H 0.08 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.08 2.78 3.00 -11.61 -0.03 2.75 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.66 7.27 -2.38 -0.02 1.64 16 44 H 0.09 1.62 5.52 -2.39 -0.01 1.61 16 45 H 0.04 1.14 6.94 -2.39 -0.02 1.12 16 46 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -68.87 368.42 5.66 -63.22 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.85 Total: 27.43 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 4.78 Total: -39.48 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -1.61 Total: -69.12 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.07 Total: -25.83 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.71 Total: 43.79 kcal Total: -68.87 5.66 -63.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078842932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.650 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds