Wall clock time and date at job start Tue Mar 31 2020 09:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00174 * 2 1 4 4 C 1.52998 * 109.47236 * 125.00218 * 3 2 1 5 5 C 1.53005 * 109.47171 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47028 * 304.99944 * 5 4 3 7 7 C 1.53003 * 109.46978 * 184.99817 * 5 4 3 8 8 C 1.52996 * 109.47318 * 65.72812 * 7 5 4 9 9 C 1.52993 * 109.47385 * 174.81264 * 8 7 5 10 10 N 1.46897 * 109.46900 * 65.00011 * 5 4 3 11 11 C 1.46902 * 110.99619 * 209.10082 * 10 5 4 12 12 C 1.50710 * 109.46793 * 174.95480 * 11 10 5 13 13 C 1.38319 * 119.96558 * 269.72214 * 12 11 10 14 14 C 1.38278 * 120.13687 * 179.76978 * 13 12 11 15 15 C 1.38124 * 120.06793 * 0.50706 * 14 13 12 16 16 C 1.38851 * 119.93019 * 359.75315 * 15 14 13 17 17 O 1.35757 * 120.07067 * 179.97438 * 16 15 14 18 18 C 1.34833 * 116.99837 * 5.99056 * 17 16 15 19 19 H 1.08002 * 119.99565 * 5.39070 * 18 17 16 20 20 C 1.38651 * 120.00329 * 185.39600 * 18 17 16 21 21 N 1.31558 * 119.99659 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46986 * 59.99964 * 22 20 18 24 24 H 1.48500 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47527 * 300.00312 * 22 20 18 26 26 C 1.38080 * 119.96097 * 90.00261 * 12 11 10 27 27 H 1.08002 * 119.99779 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99803 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99789 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47201 * 5.00304 * 3 2 1 31 31 H 1.09001 * 109.46984 * 245.00178 * 3 2 1 32 32 H 1.09004 * 109.47434 * 60.00003 * 4 3 2 33 33 H 1.09001 * 109.47101 * 299.99888 * 4 3 2 34 34 H 1.09004 * 109.47275 * 305.72593 * 7 5 4 35 35 H 1.09002 * 109.46970 * 185.72703 * 7 5 4 36 36 H 1.09004 * 109.47384 * 54.80205 * 8 7 5 37 37 H 1.09007 * 109.46727 * 294.81027 * 8 7 5 38 38 H 1.09007 * 109.46994 * 299.99600 * 9 8 7 39 39 H 1.08996 * 109.47302 * 59.99648 * 9 8 7 40 40 H 1.08997 * 109.47184 * 180.02562 * 9 8 7 41 41 H 1.00903 * 111.00346 * 85.15179 * 10 5 4 42 42 H 1.08997 * 109.47071 * 294.95515 * 11 10 5 43 43 H 1.08994 * 109.47506 * 54.95843 * 11 10 5 44 44 H 1.08000 * 119.93217 * 0.02562 * 13 12 11 45 45 H 1.08002 * 119.96850 * 180.26229 * 14 13 12 46 46 H 1.08000 * 120.03242 * 179.76579 * 15 14 13 47 47 H 0.97005 * 120.00292 * 180.02562 * 21 20 18 48 48 H 1.07994 * 120.04051 * 359.95345 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8006 2.6578 1.1812 6 1 4.2867 2.7962 0.2155 7 6 4.8586 2.6357 2.2862 8 6 5.9138 1.5766 1.9611 9 6 7.0384 1.6424 2.9962 10 7 2.8646 3.7642 1.4214 11 6 3.3348 4.9998 0.7810 12 6 2.2933 6.0771 0.9428 13 6 1.3085 6.2354 -0.0155 14 6 0.3484 7.2196 0.1318 15 6 0.3763 8.0546 1.2317 16 6 1.3668 7.9016 2.1926 17 8 1.3973 8.7211 3.2745 18 6 0.3684 9.5801 3.4209 19 1 -0.4727 9.5353 2.7450 20 6 0.3902 10.5210 4.4391 21 7 1.4147 10.5753 5.2626 22 14 -1.0348 11.7116 4.6414 23 1 -2.2860 10.9493 4.8841 24 1 -0.7700 12.6094 5.7942 25 1 -1.1813 12.5229 3.4063 26 6 2.3268 6.9087 2.0446 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 3.7401 0.5064 1.0920 33 1 2.4773 1.2355 2.1130 34 1 4.3848 2.3963 3.2382 35 1 5.3345 3.6141 2.3532 36 1 6.3224 1.7637 0.9680 37 1 5.4554 0.5879 1.9849 38 1 7.4967 2.6312 2.9724 39 1 6.6297 1.4553 3.9892 40 1 7.7903 0.8882 2.7643 41 1 2.7152 3.9033 2.4096 42 1 4.2652 5.3206 1.2495 43 1 3.5064 4.8168 -0.2797 44 1 1.2869 5.5864 -0.8784 45 1 -0.4219 7.3380 -0.6160 46 1 -0.3716 8.8255 1.3442 47 1 1.4299 11.2333 5.9752 48 1 3.0982 6.7870 2.7905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089630971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:56 Heat of formation + Delta-G solvation = -12.107011 kcal Electronic energy + Delta-G solvation = -24020.386436 eV Core-core repulsion = 20654.312430 eV Total energy + Delta-G solvation = -3366.074006 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -3.93 seconds Orbital eigenvalues (eV) -39.13502 -38.27564 -36.56083 -35.08926 -34.06904 -32.27126 -31.60617 -29.76847 -28.92267 -27.75893 -25.47587 -24.67618 -23.53431 -21.88106 -21.54023 -20.77969 -20.30924 -19.74536 -17.62360 -16.94768 -15.80755 -15.47315 -15.30850 -15.01395 -14.97094 -14.50921 -14.36651 -14.19375 -13.66797 -13.52352 -13.38652 -13.07262 -12.94810 -12.62607 -12.50914 -12.15631 -12.09517 -11.81383 -11.68271 -11.52185 -11.28135 -11.21595 -11.12725 -10.85657 -10.77940 -10.73416 -10.69395 -10.57436 -10.49687 -10.29971 -9.36865 -9.34332 -8.81034 -8.30147 -8.00561 -7.19228 -6.42431 -4.01606 2.14780 2.23339 2.43176 3.14642 3.15494 3.18196 3.98408 4.23190 4.56745 4.67448 4.73394 4.85580 4.97908 5.01625 5.12444 5.15257 5.19215 5.28697 5.32266 5.37095 5.47328 5.55043 5.58333 5.65471 5.67808 5.74282 5.78299 5.81404 5.87932 5.91694 5.96354 6.01159 6.05901 6.17425 6.18286 6.23965 6.30886 6.36842 6.60133 6.69712 6.76647 6.94768 7.10477 7.15051 7.31223 7.42187 7.46542 7.53212 7.86653 8.02593 9.03464 9.74325 10.75814 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.002897 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.393337 B = 9662.412533 C =10840.829410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.089 4.089 4 C -0.100 4.100 5 C 0.086 3.914 6 H 0.074 0.926 7 C -0.151 4.151 8 C -0.120 4.120 9 C -0.154 4.154 10 N -0.676 5.676 11 C 0.107 3.893 12 C -0.044 4.044 13 C -0.189 4.189 14 C -0.078 4.078 15 C -0.231 4.231 16 C 0.152 3.848 17 O -0.181 6.181 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.345 0.655 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.270 0.730 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -17.920 -8.671 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.024 4.024 6 H 0.092 0.908 7 C -0.190 4.190 8 C -0.159 4.159 9 C -0.211 4.211 10 N -0.306 5.306 11 C -0.022 4.022 12 C -0.045 4.045 13 C -0.208 4.208 14 C -0.096 4.096 15 C -0.251 4.251 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.205 4.205 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.143 0.857 47 H 0.080 0.920 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.799 -17.911 -8.798 20.524 hybrid contribution -0.071 0.898 0.709 1.146 sum 4.728 -17.013 -8.089 19.423 Atomic orbital electron populations 1.23867 0.96132 1.01682 1.01844 1.23046 0.96083 0.98655 0.99348 1.20696 0.98732 0.95287 0.97917 1.21539 0.97571 0.95843 0.98843 1.21687 0.90922 0.91796 0.98012 0.90756 1.22370 0.97269 0.99557 0.99813 1.21517 0.96011 0.99233 0.99095 1.21790 0.98393 1.01631 0.99313 1.60590 1.46673 1.04607 1.18761 1.20818 0.94246 0.87950 0.99163 1.19164 0.96083 0.94949 0.94280 1.20397 0.98066 1.01742 1.00636 1.20742 0.97450 0.94845 0.96564 1.21184 1.02920 1.04159 0.96834 1.19323 0.93075 0.90492 0.87197 1.83990 1.44154 1.43686 1.36601 1.21252 0.97063 1.12462 1.15945 0.89244 1.25264 0.98446 0.97418 0.95369 1.70029 1.29341 1.34474 1.16182 0.85801 0.79926 0.79507 0.78321 1.19509 1.20309 1.19549 1.20019 1.01812 0.98496 1.00149 0.89067 0.88377 0.88124 0.89799 0.91904 0.92005 0.91886 0.91618 0.91894 0.92164 0.91785 0.92789 0.92770 0.92964 0.83639 0.94811 0.90801 0.87725 0.87589 0.85735 0.92043 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 14.32 29.01 0.42 -1.48 16 2 C -0.15 -1.45 9.52 -36.03 -0.34 -1.79 16 3 C -0.09 -0.89 5.54 -27.89 -0.15 -1.04 16 4 C -0.10 -0.93 4.75 -26.73 -0.13 -1.06 16 5 C 0.09 0.85 2.07 -67.71 -0.14 0.71 16 6 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 7 C -0.15 -1.41 4.65 -26.73 -0.12 -1.54 16 8 C -0.12 -0.97 5.58 -26.74 -0.15 -1.12 16 9 C -0.15 -1.21 9.91 37.15 0.37 -0.85 16 10 N -0.68 -8.40 5.68 -107.99 -0.61 -9.01 16 11 C 0.11 1.47 5.66 -4.97 -0.03 1.44 16 12 C -0.04 -0.78 5.43 -104.65 -0.57 -1.35 16 13 C -0.19 -3.31 9.70 -39.54 -0.38 -3.70 16 14 C -0.08 -1.46 10.04 -39.61 -0.40 -1.85 16 15 C -0.23 -5.11 9.13 -39.40 -0.36 -5.47 16 16 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.18 -5.19 9.76 0.02 0.00 -5.19 16 18 C -0.39 -11.02 9.44 30.89 0.29 -10.73 16 19 H 0.09 2.34 5.30 -52.49 -0.28 2.06 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.87 -25.54 13.67 55.48 0.76 -24.78 16 22 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.18 -3.88 9.65 -39.39 -0.38 -4.26 16 27 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.10 0.99 7.84 -52.49 -0.41 0.58 16 29 H 0.10 0.83 8.06 -52.48 -0.42 0.40 16 30 H 0.08 1.00 7.40 -51.93 -0.38 0.62 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.50 6.48 -51.93 -0.34 0.17 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.48 6.73 -51.92 -0.35 0.13 16 38 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.34 4.55 8.46 -39.29 -0.33 4.22 16 42 H 0.03 0.46 7.69 -51.93 -0.40 0.06 16 43 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 44 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.12 2.76 5.72 -52.49 -0.30 2.46 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -29.68 392.02 -9.62 -39.30 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.21 Total: 7.77 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -2.44 Total: -29.65 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.15 Total: -33.79 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.68 -9.62 -39.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089630971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.93 seconds