Wall clock time and date at job start Tue Mar 31 2020 09:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00174 * 2 1 4 4 C 1.52998 * 109.47236 * 125.00218 * 3 2 1 5 5 C 1.53005 * 109.47171 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47028 * 304.99944 * 5 4 3 7 7 C 1.53003 * 109.46978 * 184.99817 * 5 4 3 8 8 C 1.52996 * 109.47318 * 65.72812 * 7 5 4 9 9 C 1.52993 * 109.47385 * 174.81264 * 8 7 5 10 10 N 1.46897 * 109.46900 * 65.00011 * 5 4 3 11 11 C 1.46902 * 110.99619 * 209.10082 * 10 5 4 12 12 C 1.50710 * 109.46793 * 174.95480 * 11 10 5 13 13 C 1.38319 * 119.96558 * 269.72214 * 12 11 10 14 14 C 1.38278 * 120.13687 * 179.76978 * 13 12 11 15 15 C 1.38124 * 120.06793 * 0.50706 * 14 13 12 16 16 C 1.38851 * 119.93019 * 359.75315 * 15 14 13 17 17 O 1.35757 * 120.07067 * 179.97438 * 16 15 14 18 18 C 1.34833 * 116.99837 * 5.99056 * 17 16 15 19 19 H 1.08002 * 119.99565 * 5.39070 * 18 17 16 20 20 C 1.38651 * 120.00329 * 185.39600 * 18 17 16 21 21 N 1.31558 * 119.99659 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46986 * 59.99964 * 22 20 18 24 24 H 1.48500 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47527 * 300.00312 * 22 20 18 26 26 C 1.38080 * 119.96097 * 90.00261 * 12 11 10 27 27 H 1.08002 * 119.99779 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99803 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.99789 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47201 * 5.00304 * 3 2 1 31 31 H 1.09001 * 109.46984 * 245.00178 * 3 2 1 32 32 H 1.09004 * 109.47434 * 60.00003 * 4 3 2 33 33 H 1.09001 * 109.47101 * 299.99888 * 4 3 2 34 34 H 1.09004 * 109.47275 * 305.72593 * 7 5 4 35 35 H 1.09002 * 109.46970 * 185.72703 * 7 5 4 36 36 H 1.09004 * 109.47384 * 54.80205 * 8 7 5 37 37 H 1.09007 * 109.46727 * 294.81027 * 8 7 5 38 38 H 1.09007 * 109.46994 * 299.99600 * 9 8 7 39 39 H 1.08996 * 109.47302 * 59.99648 * 9 8 7 40 40 H 1.08997 * 109.47184 * 180.02562 * 9 8 7 41 41 H 1.00903 * 111.00346 * 85.15179 * 10 5 4 42 42 H 1.08997 * 109.47071 * 294.95515 * 11 10 5 43 43 H 1.08994 * 109.47506 * 54.95843 * 11 10 5 44 44 H 1.08000 * 119.93217 * 0.02562 * 13 12 11 45 45 H 1.08002 * 119.96850 * 180.26229 * 14 13 12 46 46 H 1.08000 * 120.03242 * 179.76579 * 15 14 13 47 47 H 0.97005 * 120.00292 * 180.02562 * 21 20 18 48 48 H 1.07994 * 120.04051 * 359.95345 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8006 2.6578 1.1812 6 1 4.2867 2.7962 0.2155 7 6 4.8586 2.6357 2.2862 8 6 5.9138 1.5766 1.9611 9 6 7.0384 1.6424 2.9962 10 7 2.8646 3.7642 1.4214 11 6 3.3348 4.9998 0.7810 12 6 2.2933 6.0771 0.9428 13 6 1.3085 6.2354 -0.0155 14 6 0.3484 7.2196 0.1318 15 6 0.3763 8.0546 1.2317 16 6 1.3668 7.9016 2.1926 17 8 1.3973 8.7211 3.2745 18 6 0.3684 9.5801 3.4209 19 1 -0.4727 9.5353 2.7450 20 6 0.3902 10.5210 4.4391 21 7 1.4147 10.5753 5.2626 22 14 -1.0348 11.7116 4.6414 23 1 -2.2860 10.9493 4.8841 24 1 -0.7700 12.6094 5.7942 25 1 -1.1813 12.5229 3.4063 26 6 2.3268 6.9087 2.0446 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 3.7401 0.5064 1.0920 33 1 2.4773 1.2355 2.1130 34 1 4.3848 2.3963 3.2382 35 1 5.3345 3.6141 2.3532 36 1 6.3224 1.7637 0.9680 37 1 5.4554 0.5879 1.9849 38 1 7.4967 2.6312 2.9724 39 1 6.6297 1.4553 3.9892 40 1 7.7903 0.8882 2.7643 41 1 2.7152 3.9033 2.4096 42 1 4.2652 5.3206 1.2495 43 1 3.5064 4.8168 -0.2797 44 1 1.2869 5.5864 -0.8784 45 1 -0.4219 7.3380 -0.6160 46 1 -0.3716 8.8255 1.3442 47 1 1.4299 11.2333 5.9752 48 1 3.0982 6.7870 2.7905 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089630971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:47 Heat of formation + Delta-G solvation = -27.631319 kcal Electronic energy + Delta-G solvation = -24021.059621 eV Core-core repulsion = 20654.312430 eV Total energy + Delta-G solvation = -3366.747190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79752 -39.33060 -38.16154 -35.87056 -35.04672 -34.26771 -32.67564 -31.09329 -30.41117 -28.63046 -27.38218 -25.93072 -24.42703 -23.17067 -22.59224 -22.26101 -21.26776 -20.47746 -19.47561 -18.74752 -16.75879 -16.70023 -16.55845 -16.18942 -16.02867 -15.93910 -15.71190 -15.46130 -15.34536 -14.82387 -14.28605 -14.24461 -13.98195 -13.83640 -13.68389 -13.56278 -13.16020 -13.06806 -12.88468 -12.69176 -12.43028 -12.37731 -12.26534 -12.19141 -12.10596 -11.94938 -11.79215 -11.59894 -11.46504 -11.25670 -11.15422 -10.78897 -10.09703 -9.68608 -9.20111 -8.96080 -8.46813 -6.15119 0.54916 0.78190 1.34350 1.45316 1.50578 1.50837 2.17900 2.80328 3.11584 3.40489 3.56565 3.79977 3.94870 4.04415 4.13877 4.14721 4.27173 4.29489 4.36347 4.42506 4.48091 4.57999 4.62339 4.65956 4.71037 4.74345 4.76627 4.87754 4.91116 4.94927 5.05397 5.08035 5.10813 5.13793 5.15132 5.27796 5.33542 5.34780 5.41248 5.47954 5.53225 5.67694 5.75614 5.82871 5.86679 6.02987 6.04041 6.16460 6.28115 6.44647 6.98106 7.79827 8.76480 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.002897 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.393337 B = 9662.412533 C =10840.829410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.086 4.086 4 C -0.094 4.094 5 C 0.091 3.909 6 H 0.083 0.917 7 C -0.147 4.147 8 C -0.116 4.116 9 C -0.155 4.155 10 N -0.680 5.680 11 C 0.113 3.887 12 C -0.033 4.033 13 C -0.170 4.170 14 C -0.074 4.074 15 C -0.246 4.246 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.099 0.901 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.196 4.196 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.338 0.662 42 H 0.034 0.966 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.272 0.728 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -19.999 -11.212 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.173 4.173 3 C -0.123 4.123 4 C -0.132 4.132 5 C -0.019 4.019 6 H 0.102 0.898 7 C -0.186 4.186 8 C -0.154 4.154 9 C -0.213 4.213 10 N -0.309 5.309 11 C -0.016 4.016 12 C -0.034 4.034 13 C -0.189 4.189 14 C -0.092 4.092 15 C -0.265 4.265 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.181 1.181 26 C -0.216 4.216 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.156 0.844 42 H 0.052 0.948 43 H 0.115 0.885 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.415 -20.038 -11.390 23.468 hybrid contribution 0.132 1.274 1.279 1.810 sum 4.547 -18.764 -10.111 21.795 Atomic orbital electron populations 1.23967 0.96455 1.01880 1.02226 1.23176 0.96100 0.99071 0.98976 1.20645 0.98426 0.94838 0.98430 1.21493 0.97630 0.95940 0.98094 1.21722 0.90611 0.91071 0.98477 0.89846 1.22308 0.97453 0.99478 0.99372 1.21496 0.95523 0.99056 0.99367 1.21800 0.98665 1.01609 0.99194 1.60607 1.47605 1.04509 1.18223 1.20800 0.92772 0.87340 1.00668 1.19596 0.96666 0.94591 0.92551 1.20921 0.96328 1.00694 1.00962 1.21148 0.98429 0.93780 0.95824 1.21293 1.02369 1.05081 0.97777 1.19889 0.95155 0.91229 0.87499 1.83945 1.45295 1.45598 1.39296 1.21747 0.97724 1.12829 1.16611 0.88349 1.26570 1.01642 0.99170 0.94637 1.70179 1.32166 1.36157 1.17542 0.84668 0.76077 0.76822 0.78784 1.18211 1.19574 1.18150 1.20231 1.01228 0.98644 1.01458 0.87834 0.89396 0.86529 0.91906 0.91071 0.90162 0.93047 0.92303 0.93147 0.91485 0.90827 0.93492 0.93139 0.91858 0.84439 0.94754 0.88519 0.83905 0.83941 0.86631 0.91876 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.62 14.32 67.78 0.97 -2.65 16 2 C -0.16 -2.55 9.52 25.64 0.24 -2.31 16 3 C -0.09 -1.49 5.54 29.85 0.17 -1.32 16 4 C -0.09 -1.51 4.75 30.60 0.15 -1.37 16 5 C 0.09 1.58 2.07 44.92 0.09 1.68 16 6 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 7 C -0.15 -2.53 4.65 30.59 0.14 -2.39 16 8 C -0.12 -1.60 5.58 30.59 0.17 -1.43 16 9 C -0.16 -2.22 9.91 71.98 0.71 -1.50 16 10 N -0.68 -15.65 5.68 -495.57 -2.81 -18.46 16 11 C 0.11 2.84 5.66 85.56 0.48 3.33 16 12 C -0.03 -1.13 5.43 -19.88 -0.11 -1.23 16 13 C -0.17 -5.39 9.70 22.30 0.22 -5.18 16 14 C -0.07 -2.59 10.04 22.25 0.22 -2.37 16 15 C -0.25 -10.97 9.13 22.39 0.20 -10.77 16 16 C 0.11 5.70 6.65 22.58 0.15 5.85 16 17 O -0.23 -14.39 9.76 -22.85 -0.22 -14.61 16 18 C -0.41 -24.51 9.44 67.92 0.64 -23.87 16 19 H 0.10 5.38 5.30 -2.91 -0.02 5.37 16 20 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 21 N -0.92 -57.37 13.67 21.61 0.30 -57.07 16 22 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C -0.20 -8.44 9.65 22.39 0.22 -8.22 16 27 H 0.10 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.09 1.68 7.84 -2.91 -0.02 1.66 16 29 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.06 1.36 7.40 -2.39 -0.02 1.34 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.03 6.48 -2.38 -0.02 1.02 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.00 7.75 -2.39 -0.02 0.98 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.07 0.89 6.73 -2.38 -0.02 0.87 16 38 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.34 8.71 8.46 -89.69 -0.76 7.95 16 42 H 0.03 0.88 7.69 -2.39 -0.02 0.86 16 43 H 0.10 2.06 7.87 -2.39 -0.02 2.04 16 44 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 45 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 46 H 0.12 5.26 5.72 -2.91 -0.02 5.25 16 47 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 48 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -68.97 392.02 4.58 -64.39 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.16 Total: 34.89 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 5.14 Total: -54.61 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -2.52 Total: -75.53 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.22 Total: -14.61 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.97 4.58 -64.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089630971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.758 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds