Wall clock time and date at job start Tue Mar 31 2020 09:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99866 * 2 1 4 4 O 1.42903 * 109.47236 * 134.99510 * 3 2 1 5 5 C 1.35896 * 116.99894 * 179.97438 * 4 3 2 6 6 C 1.38739 * 120.05393 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94631 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05317 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.94175 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46954 * 131.05482 * 9 8 7 11 11 C 1.46896 * 111.00395 * 158.11705 * 10 9 8 12 12 C 1.50698 * 109.47603 * 203.99735 * 11 10 9 13 13 H 1.07998 * 120.00028 * 358.96716 * 12 11 10 14 14 C 1.37876 * 120.00139 * 178.96297 * 12 11 10 15 15 N 1.31517 * 119.99969 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00058 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47167 * 89.99623 * 16 14 12 18 18 H 1.48498 * 109.47141 * 209.99755 * 16 14 12 19 19 H 1.48497 * 109.47257 * 329.99584 * 16 14 12 20 20 C 1.46908 * 110.99996 * 282.07201 * 10 9 8 21 21 C 1.52998 * 109.46822 * 57.64559 * 20 10 9 22 22 C 1.52995 * 109.46956 * 177.64465 * 20 10 9 23 23 C 1.52996 * 109.46776 * 297.64236 * 20 10 9 24 24 C 1.38264 * 120.11553 * 0.24804 * 8 7 6 25 25 C 1.38150 * 120.05215 * 359.45571 * 24 8 7 26 26 H 1.08003 * 120.00103 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99769 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00124 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47165 * 14.99996 * 3 2 1 30 30 H 1.08998 * 109.47530 * 255.00234 * 3 2 1 31 31 H 1.07999 * 120.02585 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.97439 * 179.97438 * 7 6 5 33 33 H 1.08992 * 109.47400 * 11.05727 * 9 8 7 34 34 H 1.08994 * 109.47541 * 251.04932 * 9 8 7 35 35 H 1.09003 * 109.47223 * 324.00048 * 11 10 9 36 36 H 1.09002 * 109.47087 * 83.99370 * 11 10 9 37 37 H 0.96996 * 119.99942 * 179.97438 * 15 14 12 38 38 H 1.08994 * 109.47454 * 46.44408 * 21 20 10 39 39 H 1.09006 * 109.47080 * 166.44909 * 21 20 10 40 40 H 1.08999 * 109.47001 * 286.43794 * 21 20 10 41 41 H 1.08997 * 109.47625 * 69.46304 * 22 20 10 42 42 H 1.09009 * 109.46909 * 189.46045 * 22 20 10 43 43 H 1.09002 * 109.47440 * 309.45622 * 22 20 10 44 44 H 1.09005 * 109.47402 * 56.63269 * 23 20 10 45 45 H 1.09002 * 109.47061 * 176.62895 * 23 20 10 46 46 H 1.08994 * 109.47381 * 296.62881 * 23 20 10 47 47 H 1.08001 * 119.97795 * 179.70193 * 24 8 7 48 48 H 1.07993 * 120.02935 * 180.24852 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9095 2.3451 1.0783 6 6 4.9604 2.3522 1.9841 7 6 5.7545 3.4754 2.1102 8 6 5.5024 4.5922 1.3350 9 6 6.3700 5.8165 1.4751 10 7 6.7984 6.2679 0.1444 11 6 7.1833 7.6853 0.1679 12 6 7.0458 8.2663 -1.2158 13 1 6.7223 7.6406 -2.0345 14 6 7.3328 9.5967 -1.4366 15 7 7.2132 10.1036 -2.6442 16 14 7.8928 10.6788 -0.0207 17 1 9.3736 10.6328 0.0819 18 1 7.4567 12.0773 -0.2639 19 1 7.2934 10.1866 1.2457 20 6 7.8937 5.4333 -0.3673 21 6 7.4424 3.9722 -0.4144 22 6 8.2721 5.8958 -1.7757 23 6 9.1073 5.5629 0.5553 24 6 4.4524 4.5898 0.4355 25 6 3.6591 3.4667 0.3013 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3854 2.1161 0.2660 30 1 2.4754 1.4869 -0.9926 31 1 5.1573 1.4802 2.5901 32 1 6.5724 3.4816 2.8156 33 1 7.2464 5.5740 2.0759 34 1 5.8033 6.6096 1.9626 35 1 6.5338 8.2269 0.8556 36 1 8.2181 7.7754 0.4985 37 1 7.4148 11.0396 -2.7994 38 1 6.4525 3.9120 -0.8665 39 1 8.1490 3.3926 -1.0085 40 1 7.4044 3.5709 0.5983 41 1 8.7497 6.8741 -1.7209 42 1 8.9625 5.1789 -2.2204 43 1 7.3739 5.9639 -2.3895 44 1 8.8220 5.2903 1.5714 45 1 9.8991 4.8982 0.2096 46 1 9.4655 6.5922 0.5422 47 1 4.2545 5.4650 -0.1654 48 1 2.8414 3.4638 -0.4042 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131803984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:00 Heat of formation + Delta-G solvation = 8.843279 kcal Electronic energy + Delta-G solvation = -25402.882107 eV Core-core repulsion = 22037.716574 eV Total energy + Delta-G solvation = -3365.165533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31379 -40.17722 -38.25081 -35.05034 -34.77937 -33.57637 -32.00806 -31.86408 -29.40071 -28.14488 -27.51951 -27.45997 -25.55193 -23.63279 -23.27310 -22.02628 -20.82957 -19.40288 -19.10475 -18.83688 -17.34936 -17.02224 -16.72233 -16.32252 -16.13818 -15.76193 -15.46009 -15.17907 -14.96237 -14.80687 -14.42872 -14.31287 -14.11160 -13.74811 -13.59304 -13.34844 -13.23656 -13.03673 -12.80352 -12.72590 -12.58619 -12.47619 -12.38077 -12.09407 -11.92421 -11.84150 -11.76183 -11.65157 -11.53579 -11.22066 -10.97992 -10.66241 -10.42543 -9.78613 -8.87493 -8.82633 -8.17121 -6.14219 0.49231 0.57415 1.14919 1.35239 1.37626 1.46525 2.39752 2.45309 2.85520 3.14675 3.30838 3.84788 4.01046 4.01776 4.04232 4.08850 4.17891 4.20938 4.30845 4.41399 4.48434 4.50417 4.57393 4.65435 4.69054 4.78016 4.81126 4.86860 4.95387 4.97320 4.99722 5.03447 5.12152 5.17635 5.22924 5.24126 5.37370 5.40813 5.52346 5.60870 5.62721 5.67811 5.69689 5.73434 5.87039 5.92051 6.16856 6.51661 6.60747 6.79213 6.91599 7.44771 8.98739 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.003365 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.253605 B = 8320.061530 C = 8754.567855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.174 4.174 3 C 0.081 3.919 4 O -0.325 6.325 5 C 0.112 3.888 6 C -0.155 4.155 7 C -0.077 4.077 8 C -0.100 4.100 9 C 0.086 3.914 10 N -0.526 5.526 11 C 0.165 3.835 12 C -0.487 4.487 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.953 5.953 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.250 1.250 20 C 0.112 3.888 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.176 4.176 24 C -0.063 4.063 25 C -0.213 4.213 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.000 1.000 37 H 0.261 0.739 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.110 0.890 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -19.610 10.426 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.192 4.192 3 C 0.007 3.993 4 O -0.240 6.240 5 C 0.067 3.933 6 C -0.174 4.174 7 C -0.095 4.095 8 C -0.100 4.100 9 C -0.042 4.042 10 N -0.249 5.249 11 C 0.038 3.962 12 C -0.526 4.526 13 H 0.070 0.930 14 C -0.192 4.192 15 N -0.595 5.595 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.174 1.174 20 C 0.023 3.977 21 C -0.187 4.187 22 C -0.177 4.177 23 C -0.235 4.235 24 C -0.082 4.082 25 C -0.232 4.232 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.017 0.983 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.128 0.872 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.030 -19.678 10.110 23.213 hybrid contribution 0.739 1.500 0.138 1.678 sum -6.291 -18.179 10.247 21.796 Atomic orbital electron populations 1.24117 0.95002 1.03694 0.96922 1.22692 0.96167 0.97253 1.03088 1.21967 0.87621 0.97732 0.92000 1.86027 1.42723 1.35902 1.59321 1.19090 0.92173 0.85951 0.96081 1.20515 0.95728 1.00281 1.00859 1.20967 0.99027 0.91080 0.98454 1.19725 0.96726 0.95675 0.97912 1.21125 0.97340 0.95088 0.90603 1.62112 1.37178 1.02669 1.22974 1.20087 0.94163 0.86129 0.95849 1.21435 1.41915 0.94435 0.94813 0.93029 1.25709 0.96391 0.99441 0.97617 1.70045 1.52370 1.14303 1.22779 0.85924 0.79048 0.78174 0.81072 1.19726 1.21518 1.17403 1.20947 0.89107 0.93381 0.94305 1.22105 1.00826 0.93512 1.02283 1.21886 0.99762 1.00215 0.95789 1.22444 0.99069 1.01561 1.00405 1.20781 0.93693 0.97348 0.96384 1.21305 1.03878 0.94151 1.03864 0.87631 0.85759 0.86082 0.91070 0.90972 0.83903 0.83454 0.92252 0.91186 0.96182 0.98270 0.92972 0.93342 0.92470 0.90993 0.93478 0.92896 0.94808 0.91261 0.91011 0.93877 0.87174 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 14.31 67.78 0.97 -0.89 16 2 C -0.17 -2.64 9.89 25.65 0.25 -2.39 16 3 C 0.08 1.51 5.15 71.24 0.37 1.88 16 4 O -0.33 -7.73 10.12 -92.38 -0.93 -8.67 16 5 C 0.11 2.83 6.69 22.51 0.15 2.98 16 6 C -0.16 -3.58 9.99 22.37 0.22 -3.35 16 7 C -0.08 -1.78 7.81 22.25 0.17 -1.61 16 8 C -0.10 -2.82 3.19 -19.85 -0.06 -2.88 16 9 C 0.09 2.71 4.94 85.56 0.42 3.13 16 10 N -0.53 -20.45 3.90 -855.76 -3.34 -23.79 16 11 C 0.16 7.55 3.48 85.56 0.30 7.85 16 12 C -0.49 -27.10 7.31 25.60 0.19 -26.91 16 13 H 0.05 3.20 6.03 -2.91 -0.02 3.18 16 14 C 0.00 0.25 5.47 84.65 0.46 0.71 16 15 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 16 Si 0.93 43.93 27.49 68.60 1.89 45.81 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.25 -10.94 6.51 99.48 0.65 -10.29 16 20 C 0.11 3.93 0.71 3.52 0.00 3.93 16 21 C -0.13 -3.89 7.09 71.98 0.51 -3.38 16 22 C -0.12 -4.88 7.03 71.98 0.51 -4.37 16 23 C -0.18 -5.41 7.85 71.98 0.57 -4.85 16 24 C -0.06 -1.94 8.10 22.25 0.18 -1.76 16 25 C -0.21 -5.70 9.04 22.37 0.20 -5.50 16 26 H 0.11 1.09 7.90 -2.91 -0.02 1.07 16 27 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 28 H 0.12 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.07 1.23 7.38 -2.38 -0.02 1.21 16 30 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 31 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.15 2.65 7.97 -2.91 -0.02 2.63 16 33 H 0.06 1.64 5.42 -2.39 -0.01 1.63 16 34 H 0.07 2.28 7.50 -2.39 -0.02 2.26 16 35 H 0.02 0.93 6.47 -2.39 -0.02 0.92 16 36 H 0.00 -0.01 5.15 -2.39 -0.01 -0.02 16 37 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.05 1.60 6.47 -2.39 -0.02 1.59 16 39 H 0.06 1.55 7.96 -2.38 -0.02 1.54 16 40 H 0.07 1.89 5.03 -2.39 -0.01 1.88 16 41 H 0.05 2.22 6.23 -2.39 -0.01 2.21 16 42 H 0.05 1.85 7.99 -2.38 -0.02 1.83 16 43 H 0.03 1.55 6.83 -2.39 -0.02 1.53 16 44 H 0.07 1.84 5.99 -2.38 -0.01 1.83 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.04 1.50 6.24 -2.39 -0.01 1.48 16 47 H 0.11 3.87 7.99 -2.91 -0.02 3.85 16 48 H 0.13 3.10 6.30 -2.91 -0.02 3.09 16 Total: -1.00 -65.38 363.40 4.20 -61.18 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.88 Total: 21.96 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 5.41 Total: -37.40 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.04 Total: -82.88 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.93 Total: -8.67 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.89 Total: 45.81 kcal Total: -65.38 4.20 -61.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131803984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.027 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds