Wall clock time and date at job start Tue Mar 31 2020 09:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 C 1.53006 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46505 * 304.99766 * 4 3 2 6 6 C 1.52997 * 109.47127 * 64.99895 * 4 3 2 7 7 C 1.52992 * 109.47223 * 185.00400 * 4 3 2 8 8 C 1.50697 * 109.47463 * 174.99857 * 7 4 3 9 9 O 1.21287 * 119.99710 * 359.97438 * 8 7 4 10 10 N 1.34781 * 120.00631 * 179.97438 * 8 7 4 11 11 C 1.46497 * 120.00036 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47245 * 35.00022 * 11 10 8 13 13 C 1.53001 * 109.46682 * 155.00459 * 11 10 8 14 14 C 1.50700 * 109.47030 * 294.99651 * 13 11 10 15 15 H 1.07999 * 119.99908 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00045 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99907 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46985 * 60.00257 * 18 16 14 20 20 H 1.48499 * 109.46918 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47143 * 299.99999 * 18 16 14 22 22 C 1.50707 * 109.47152 * 275.00011 * 11 10 8 23 23 C 1.38232 * 119.99487 * 319.73175 * 22 11 10 24 24 C 1.38245 * 119.99287 * 179.78991 * 23 22 11 25 25 C 1.38237 * 119.99934 * 0.43437 * 24 23 22 26 26 C 1.38228 * 119.99878 * 359.81727 * 25 24 23 27 27 C 1.38229 * 119.99905 * 140.00025 * 22 11 10 28 28 H 1.08993 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46984 * 299.99822 * 1 2 3 30 30 H 1.08996 * 109.47312 * 59.99462 * 1 2 3 31 31 H 1.08998 * 109.47140 * 240.00409 * 2 1 3 32 32 H 1.08997 * 109.47293 * 119.99983 * 2 1 3 33 33 H 1.09007 * 109.47132 * 60.00269 * 3 2 1 34 34 H 1.08996 * 109.47552 * 300.00391 * 3 2 1 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 38 38 H 1.09002 * 109.46906 * 294.99936 * 7 4 3 39 39 H 1.09006 * 109.47717 * 54.99311 * 7 4 3 40 40 H 0.96996 * 119.99210 * 0.02562 * 10 8 7 41 41 H 1.08989 * 109.47643 * 54.99851 * 13 11 10 42 42 H 1.09001 * 109.46774 * 174.99949 * 13 11 10 43 43 H 0.97001 * 120.00551 * 180.02562 * 17 16 14 44 44 H 1.07999 * 120.00600 * 359.97438 * 23 22 11 45 45 H 1.07997 * 119.99828 * 180.27359 * 24 23 22 46 46 H 1.08001 * 119.99425 * 179.83626 * 25 24 23 47 47 H 1.08005 * 119.99752 * 179.97438 * 26 25 24 48 48 H 1.08000 * 119.99879 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8331 -1.3083 7 6 4.0800 2.8795 0.1252 8 6 5.5819 2.8706 0.2481 9 8 6.1850 1.8184 0.2367 10 7 6.2551 4.0318 0.3707 11 6 7.7152 4.0230 0.4896 12 1 8.1242 3.2146 -0.1163 13 6 8.2746 5.3605 0.0006 14 6 7.9955 5.5132 -1.4725 15 1 7.4712 4.7345 -2.0063 16 6 8.4096 6.6471 -2.1386 17 7 9.0485 7.5952 -1.4887 18 14 8.0642 6.8361 -3.9647 19 1 6.5981 6.7984 -4.1977 20 1 8.6071 8.1343 -4.4394 21 1 8.7123 5.7263 -4.7085 22 6 8.1005 3.8145 1.9316 23 6 7.3896 4.4456 2.9351 24 6 7.7404 4.2508 4.2580 25 6 8.8076 3.4321 4.5768 26 6 9.5217 2.8052 3.5729 27 6 9.1683 2.9965 2.2503 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.1695 0.8328 -1.3085 36 1 3.7158 1.4228 -2.1498 37 1 3.7161 -0.1906 -1.3979 38 1 3.7912 3.4463 -0.7600 39 1 3.6457 3.3431 1.0110 40 1 5.7726 4.8732 0.3802 41 1 7.7990 6.1749 0.5468 42 1 9.3508 5.3883 0.1712 43 1 9.3395 8.3931 -1.9572 44 1 6.5583 5.0885 2.6859 45 1 7.1822 4.7404 5.0424 46 1 9.0832 3.2821 5.6102 47 1 10.3557 2.1658 3.8219 48 1 9.7261 2.5065 1.4659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153356423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:46 Heat of formation + Delta-G solvation = -54.005028 kcal Electronic energy + Delta-G solvation = -24846.766691 eV Core-core repulsion = 21478.875851 eV Total energy + Delta-G solvation = -3367.890840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 12.61 seconds Orbital eigenvalues (eV) -39.73063 -38.59583 -36.72069 -35.09289 -32.73839 -32.65450 -31.13551 -30.44985 -28.91485 -27.54542 -26.58150 -24.80989 -22.34748 -22.20484 -21.90335 -20.48767 -19.73306 -19.48481 -16.98142 -16.44970 -16.15463 -15.61467 -15.38237 -15.05553 -14.66095 -14.55060 -14.19529 -13.94307 -13.62010 -13.45785 -13.02536 -12.96725 -12.79241 -12.49214 -12.26605 -12.10539 -11.86857 -11.73217 -11.51775 -11.44031 -11.13226 -10.95275 -10.93423 -10.72641 -10.68498 -10.58153 -10.52031 -10.42859 -10.39933 -9.76813 -9.34241 -9.14950 -8.53345 -8.45526 -8.34739 -8.16498 -6.09268 -4.12831 1.79533 1.81416 3.20557 3.28070 3.33330 3.36102 3.80082 4.25607 4.39483 4.74014 4.83455 4.90958 5.13079 5.18287 5.26527 5.27278 5.28458 5.34274 5.39702 5.51171 5.57262 5.61478 5.66583 5.76085 5.76910 5.87637 5.91592 5.92249 5.94656 5.96420 6.13451 6.14730 6.19821 6.28226 6.37598 6.46073 6.50808 6.59904 6.65131 6.85795 6.86574 6.98634 7.13730 7.41869 7.49696 7.64220 7.87375 8.19580 8.26770 8.85541 8.92913 9.52157 11.01265 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.004789 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.039754 B = 5845.622837 C = 8489.623500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.073 4.073 5 H 0.075 0.925 6 C -0.153 4.153 7 C -0.139 4.139 8 C 0.510 3.490 9 O -0.549 6.549 10 N -0.703 5.703 11 C 0.184 3.816 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.520 4.520 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.069 4.069 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.109 4.109 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.400 0.600 41 H 0.024 0.976 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 -9.602 7.546 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.092 4.092 5 H 0.094 0.906 6 C -0.210 4.210 7 C -0.179 4.179 8 C 0.296 3.704 9 O -0.427 6.427 10 N -0.352 5.352 11 C 0.079 3.921 12 H 0.104 0.896 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.071 4.071 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.234 0.766 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.706 -10.159 7.496 16.553 hybrid contribution -0.326 0.780 -0.982 1.296 sum -11.032 -9.379 6.514 15.877 Atomic orbital electron populations 1.21782 0.96232 1.01303 1.01644 1.21570 0.95355 0.97198 1.02218 1.21690 0.95095 0.96699 1.01826 1.20857 0.93982 0.94608 0.99740 0.90643 1.21989 1.03469 0.99689 0.95902 1.21756 0.93055 0.99224 1.03859 1.20565 0.89745 0.84066 0.76014 1.90615 1.70416 1.30991 1.50694 1.46020 1.07942 1.08365 1.72828 1.20215 0.79447 1.02614 0.89786 0.89643 1.19376 0.96986 0.88697 0.96233 1.21099 1.37328 1.03663 0.93772 0.92448 1.24986 0.95032 0.95895 0.98209 1.69947 1.38633 1.08274 1.36266 0.86656 0.78596 0.77301 0.85458 1.20260 1.21304 1.20206 1.20563 0.94881 0.94860 0.96749 1.20907 0.99952 0.99454 0.92329 1.21042 0.97784 0.99299 0.96225 1.20988 0.96849 0.98867 0.98683 1.21038 0.99827 1.00214 0.93018 1.21020 0.97236 0.98227 0.96245 0.93042 0.92919 0.92857 0.91708 0.92138 0.92168 0.92002 0.90435 0.93521 0.93174 0.89100 0.89506 0.76580 0.95801 0.94892 0.92809 0.86593 0.86775 0.86874 0.86644 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C -0.12 -1.14 4.68 -26.73 -0.13 -1.26 16 4 C -0.07 -0.90 2.04 -90.62 -0.18 -1.08 16 5 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 6 C -0.15 -2.04 8.69 37.16 0.32 -1.72 16 7 C -0.14 -1.79 5.17 -27.89 -0.14 -1.93 16 8 C 0.51 8.74 7.50 -10.98 -0.08 8.65 16 9 O -0.55 -11.09 13.63 5.55 0.08 -11.01 16 10 N -0.70 -12.49 4.04 -54.93 -0.22 -12.72 16 11 C 0.18 3.74 2.11 -69.08 -0.15 3.59 16 12 H 0.09 1.91 7.44 -51.93 -0.39 1.53 16 13 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 14 C -0.52 -13.74 8.84 -34.44 -0.30 -14.05 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C -0.07 -1.29 4.91 -104.62 -0.51 -1.81 16 23 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.14 -1.95 10.05 -39.59 -0.40 -2.35 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.27 16 27 C -0.11 -1.92 9.67 -39.59 -0.38 -2.30 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.27 5.95 -51.93 -0.31 0.96 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.40 6.53 8.60 -40.82 -0.35 6.18 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.12 1.82 7.73 -52.49 -0.41 1.42 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 48 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -30.17 389.08 -10.13 -40.30 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.43 Total: 7.58 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.13 Total: -21.13 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.51 Total: -37.58 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.17 -10.13 -40.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153356423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.705 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.61 seconds