Wall clock time and date at job start Tue Mar 31 2020 09:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 C 1.53006 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46505 * 304.99766 * 4 3 2 6 6 C 1.52997 * 109.47127 * 64.99895 * 4 3 2 7 7 C 1.52992 * 109.47223 * 185.00400 * 4 3 2 8 8 C 1.50697 * 109.47463 * 174.99857 * 7 4 3 9 9 O 1.21287 * 119.99710 * 359.97438 * 8 7 4 10 10 N 1.34781 * 120.00631 * 179.97438 * 8 7 4 11 11 C 1.46497 * 120.00036 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47245 * 35.00022 * 11 10 8 13 13 C 1.53001 * 109.46682 * 155.00459 * 11 10 8 14 14 C 1.50700 * 109.47030 * 294.99651 * 13 11 10 15 15 H 1.07999 * 119.99908 * 0.02562 * 14 13 11 16 16 C 1.37873 * 120.00045 * 180.02562 * 14 13 11 17 17 N 1.31511 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99907 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46985 * 60.00257 * 18 16 14 20 20 H 1.48499 * 109.46918 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47143 * 299.99999 * 18 16 14 22 22 C 1.50707 * 109.47152 * 275.00011 * 11 10 8 23 23 C 1.38232 * 119.99487 * 319.73175 * 22 11 10 24 24 C 1.38245 * 119.99287 * 179.78991 * 23 22 11 25 25 C 1.38237 * 119.99934 * 0.43437 * 24 23 22 26 26 C 1.38228 * 119.99878 * 359.81727 * 25 24 23 27 27 C 1.38229 * 119.99905 * 140.00025 * 22 11 10 28 28 H 1.08993 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46984 * 299.99822 * 1 2 3 30 30 H 1.08996 * 109.47312 * 59.99462 * 1 2 3 31 31 H 1.08998 * 109.47140 * 240.00409 * 2 1 3 32 32 H 1.08997 * 109.47293 * 119.99983 * 2 1 3 33 33 H 1.09007 * 109.47132 * 60.00269 * 3 2 1 34 34 H 1.08996 * 109.47552 * 300.00391 * 3 2 1 35 35 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 38 38 H 1.09002 * 109.46906 * 294.99936 * 7 4 3 39 39 H 1.09006 * 109.47717 * 54.99311 * 7 4 3 40 40 H 0.96996 * 119.99210 * 0.02562 * 10 8 7 41 41 H 1.08989 * 109.47643 * 54.99851 * 13 11 10 42 42 H 1.09001 * 109.46774 * 174.99949 * 13 11 10 43 43 H 0.97001 * 120.00551 * 180.02562 * 17 16 14 44 44 H 1.07999 * 120.00600 * 359.97438 * 23 22 11 45 45 H 1.07997 * 119.99828 * 180.27359 * 24 23 22 46 46 H 1.08001 * 119.99425 * 179.83626 * 25 24 23 47 47 H 1.08005 * 119.99752 * 179.97438 * 26 25 24 48 48 H 1.08000 * 119.99879 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8331 -1.3083 7 6 4.0800 2.8795 0.1252 8 6 5.5819 2.8706 0.2481 9 8 6.1850 1.8184 0.2367 10 7 6.2551 4.0318 0.3707 11 6 7.7152 4.0230 0.4896 12 1 8.1242 3.2146 -0.1163 13 6 8.2746 5.3605 0.0006 14 6 7.9955 5.5132 -1.4725 15 1 7.4712 4.7345 -2.0063 16 6 8.4096 6.6471 -2.1386 17 7 9.0485 7.5952 -1.4887 18 14 8.0642 6.8361 -3.9647 19 1 6.5981 6.7984 -4.1977 20 1 8.6071 8.1343 -4.4394 21 1 8.7123 5.7263 -4.7085 22 6 8.1005 3.8145 1.9316 23 6 7.3896 4.4456 2.9351 24 6 7.7404 4.2508 4.2580 25 6 8.8076 3.4321 4.5768 26 6 9.5217 2.8052 3.5729 27 6 9.1683 2.9965 2.2503 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 5.1695 0.8328 -1.3085 36 1 3.7158 1.4228 -2.1498 37 1 3.7161 -0.1906 -1.3979 38 1 3.7912 3.4463 -0.7600 39 1 3.6457 3.3431 1.0110 40 1 5.7726 4.8732 0.3802 41 1 7.7990 6.1749 0.5468 42 1 9.3508 5.3883 0.1712 43 1 9.3395 8.3931 -1.9572 44 1 6.5583 5.0885 2.6859 45 1 7.1822 4.7404 5.0424 46 1 9.0832 3.2821 5.6102 47 1 10.3557 2.1658 3.8219 48 1 9.7261 2.5065 1.4659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153356423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:45 Heat of formation + Delta-G solvation = -68.682146 kcal Electronic energy + Delta-G solvation = -24847.403138 eV Core-core repulsion = 21478.875851 eV Total energy + Delta-G solvation = -3368.527288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12263 -39.86034 -37.75042 -36.62876 -34.70975 -33.58076 -32.51718 -31.69789 -30.57962 -28.78602 -27.44019 -26.54049 -23.81210 -23.48690 -23.03788 -21.65393 -21.09124 -20.65971 -18.69989 -17.90731 -17.66426 -16.93944 -16.59066 -16.42184 -16.19076 -15.79732 -15.41804 -15.04572 -14.79992 -14.47117 -14.40240 -14.18932 -14.14177 -13.99195 -13.66772 -13.42980 -13.17502 -12.96338 -12.79555 -12.67073 -12.55540 -12.44598 -12.30406 -12.15082 -11.87512 -11.78237 -11.60464 -11.58510 -11.45698 -11.33788 -11.24314 -10.66721 -10.50145 -9.88934 -9.75246 -9.51375 -8.20683 -6.31202 0.51537 0.55685 1.39693 1.41488 1.49395 1.84173 2.39530 2.43978 2.98144 3.13526 3.84083 3.84667 3.99607 4.02018 4.03880 4.20746 4.28736 4.31655 4.32375 4.44201 4.49788 4.61637 4.66371 4.74950 4.77147 4.77770 4.80108 4.84498 4.95500 5.00007 5.08895 5.12924 5.19700 5.21502 5.26715 5.28483 5.35749 5.43214 5.46929 5.57202 5.60337 5.61086 5.63656 5.66559 5.77740 5.93855 6.15883 6.20462 6.79689 6.81444 7.37689 7.47331 8.89923 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.004789 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.039754 B = 5845.622837 C = 8489.623500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.069 4.069 5 H 0.058 0.942 6 C -0.151 4.151 7 C -0.131 4.131 8 C 0.505 3.495 9 O -0.583 6.583 10 N -0.701 5.701 11 C 0.200 3.800 12 H 0.054 0.946 13 C 0.039 3.961 14 C -0.530 4.530 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.276 1.276 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.136 4.136 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.407 0.593 41 H 0.012 0.988 42 H 0.000 1.000 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.143 0.857 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 -9.646 8.630 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.145 4.145 4 C -0.088 4.088 5 H 0.077 0.923 6 C -0.208 4.208 7 C -0.170 4.170 8 C 0.293 3.707 9 O -0.464 6.464 10 N -0.350 5.350 11 C 0.095 3.905 12 H 0.072 0.928 13 C 0.002 3.998 14 C -0.568 4.568 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.567 5.567 18 Si 0.781 3.219 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.202 1.202 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.154 4.154 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.243 0.757 41 H 0.030 0.970 42 H 0.018 0.982 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.169 0.831 47 H 0.160 0.840 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.797 -10.202 8.583 18.480 hybrid contribution 0.380 0.746 -1.254 1.508 sum -12.417 -9.456 7.328 17.243 Atomic orbital electron populations 1.21758 0.95029 1.01859 1.02072 1.21570 0.96391 0.96664 1.01832 1.21629 0.92668 0.97404 1.02806 1.20829 0.95887 0.93766 0.98336 0.92324 1.21938 1.01051 1.00838 0.96965 1.21813 0.89299 1.00153 1.05772 1.21376 0.91556 0.83014 0.74749 1.90604 1.71597 1.32150 1.52067 1.45952 1.06813 1.09230 1.73034 1.19663 0.80934 0.98991 0.90941 0.92823 1.19111 0.94939 0.90489 0.95296 1.21370 1.36989 1.03483 0.94969 0.92838 1.25788 0.94786 0.95581 1.02631 1.70063 1.39696 1.08831 1.38065 0.85636 0.79046 0.77164 0.80018 1.18861 1.20846 1.20177 1.20459 0.96412 0.96955 0.95892 1.21077 1.00166 0.99603 0.93074 1.21452 0.97919 0.98872 0.95946 1.21467 0.95772 0.97300 1.00252 1.21378 1.00549 1.00284 0.92003 1.21171 0.97546 0.99060 0.97649 0.92504 0.92387 0.92511 0.92193 0.92537 0.90895 0.91235 0.94042 0.92794 0.92035 0.87691 0.86696 0.75715 0.96993 0.98214 0.92701 0.85998 0.83493 0.83103 0.83967 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.13 -2.10 5.69 30.59 0.17 -1.93 16 3 C -0.11 -1.87 4.68 30.60 0.14 -1.73 16 4 C -0.07 -1.64 2.04 -10.79 -0.02 -1.66 16 5 H 0.06 1.59 7.95 -2.39 -0.02 1.57 16 6 C -0.15 -4.00 8.69 71.98 0.63 -3.37 16 7 C -0.13 -3.19 5.17 29.84 0.15 -3.03 16 8 C 0.50 17.59 7.50 87.66 0.66 18.25 16 9 O -0.58 -24.64 13.63 -3.05 -0.04 -24.68 16 10 N -0.70 -25.63 4.04 -446.08 -1.80 -27.43 16 11 C 0.20 8.62 2.11 44.25 0.09 8.72 16 12 H 0.05 2.61 7.44 -2.39 -0.02 2.59 16 13 C 0.04 1.98 4.49 29.85 0.13 2.11 16 14 C -0.53 -28.92 8.84 25.60 0.23 -28.69 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.60 5.46 84.65 0.46 1.06 16 17 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 18 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.10 -3.72 4.91 -19.87 -0.10 -3.82 16 23 C -0.12 -4.04 9.32 22.27 0.21 -3.84 16 24 C -0.12 -3.41 10.05 22.27 0.22 -3.19 16 25 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 26 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 27 C -0.14 -4.96 9.67 22.27 0.22 -4.74 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.04 6.56 -2.39 -0.02 1.03 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 1.40 5.95 -2.39 -0.01 1.39 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.44 6.56 -2.38 -0.02 1.43 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.41 13.45 8.60 -92.71 -0.80 12.65 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.12 3.79 7.73 -2.91 -0.02 3.77 16 45 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 48 H 0.11 4.04 8.04 -2.91 -0.02 4.02 16 Total: -1.00 -67.85 389.08 4.94 -62.90 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.12 Total: 31.60 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 4.36 Total: -33.74 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.52 Total: -81.47 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -67.85 4.94 -62.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153356423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.780 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds