Wall clock time and date at job start Tue Mar 31 2020 10:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47428 * 2 1 4 4 H 1.08999 * 110.05425 * 306.42615 * 3 2 1 5 5 C 1.54266 * 110.02878 * 67.83723 * 3 2 1 6 6 C 1.55238 * 104.23333 * 142.89793 * 5 3 2 7 7 C 1.54894 * 102.58338 * 322.08174 * 6 5 3 8 8 C 1.53869 * 110.03216 * 185.00100 * 3 2 1 9 9 H 1.09001 * 110.02983 * 121.43438 * 8 3 2 10 10 N 1.46494 * 110.03514 * 0.02562 * 8 3 2 11 11 C 1.39672 * 120.00289 * 156.37825 * 10 8 3 12 12 C 1.38972 * 120.04240 * 359.97438 * 11 10 8 13 13 C 1.38116 * 120.03517 * 179.97438 * 12 11 10 14 14 C 1.38220 * 120.12465 * 0.05317 * 13 12 11 15 15 C 1.38760 * 120.09743 * 359.97388 * 14 13 12 16 16 O 1.35895 * 120.02141 * 180.02562 * 15 14 13 17 17 C 1.42893 * 116.99939 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.47326 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47329 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00318 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00370 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46959 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47507 * 119.99608 * 23 21 19 26 26 H 1.48501 * 109.47170 * 239.99707 * 23 21 19 27 27 C 1.38626 * 119.96331 * 359.69849 * 15 14 13 28 28 H 1.08997 * 109.47076 * 59.99493 * 1 2 3 29 29 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46610 * 299.99387 * 1 2 3 31 31 H 1.09008 * 109.47270 * 240.00251 * 2 1 3 32 32 H 1.08999 * 109.47565 * 120.00326 * 2 1 3 33 33 H 1.09005 * 110.48526 * 261.57665 * 5 3 2 34 34 H 1.09007 * 110.48724 * 24.08149 * 5 3 2 35 35 H 1.08996 * 110.89448 * 203.79739 * 6 5 3 36 36 H 1.08993 * 110.76342 * 80.31404 * 6 5 3 37 37 H 1.09002 * 110.48891 * 279.18596 * 7 6 5 38 38 H 1.08998 * 110.48494 * 156.67683 * 7 6 5 39 39 H 0.97003 * 120.00592 * 336.37654 * 10 8 3 40 40 H 1.07996 * 119.98318 * 0.02562 * 12 11 10 41 41 H 1.08000 * 119.93625 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.94954 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.47507 * 300.00421 * 17 16 15 44 44 H 1.09000 * 109.47264 * 60.00243 * 17 16 15 45 45 H 1.09002 * 109.47028 * 300.00021 * 18 17 16 46 46 H 1.09000 * 109.46836 * 59.99877 * 18 17 16 47 47 H 0.96991 * 120.00287 * 180.02562 * 22 21 19 48 48 H 1.07999 * 120.06410 * 180.32016 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5915 1.9976 -0.8239 5 6 1.7007 2.1229 1.3423 6 6 2.9314 3.0224 1.6361 7 6 4.1126 2.1495 1.1440 8 6 3.5735 1.4594 -0.1260 9 1 3.8692 2.0227 -1.0111 10 7 4.0853 0.0892 -0.2088 11 6 5.3239 -0.1588 -0.8049 12 6 6.0712 0.8934 -1.3202 13 6 7.2962 0.6480 -1.9091 14 6 7.7814 -0.6438 -1.9886 15 6 7.0394 -1.6985 -1.4763 16 8 7.5181 -2.9679 -1.5547 17 6 8.7919 -3.1435 -2.1781 18 6 9.1614 -4.6282 -2.1740 19 6 10.5045 -4.8134 -2.8319 20 1 11.0411 -3.9577 -3.2143 21 6 11.0483 -6.0753 -2.9457 22 7 10.3951 -7.1173 -2.4796 23 14 12.7134 -6.3048 -3.7606 24 1 13.2373 -4.9853 -4.1964 25 1 13.6581 -6.9178 -2.7926 26 1 12.5684 -7.1938 -4.9413 27 6 5.8125 -1.4558 -0.8783 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8000 2.7291 1.2457 34 1 1.5751 1.3770 2.1271 35 1 3.0191 3.2246 2.7036 36 1 2.8752 3.9515 1.0691 37 1 4.3788 1.4080 1.8973 38 1 4.9734 2.7732 0.9031 39 1 3.5641 -0.6458 0.1503 40 1 5.6944 1.9037 -1.2594 41 1 7.8759 1.4670 -2.3087 42 1 8.7394 -0.8325 -2.4500 43 1 8.7462 -2.7836 -3.2060 44 1 9.5459 -2.5795 -1.6290 45 1 9.2071 -4.9884 -1.1463 46 1 8.4073 -5.1918 -2.7234 47 1 10.7778 -8.0049 -2.5593 48 1 5.2360 -2.2749 -0.4744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165147065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:35 Heat of formation + Delta-G solvation = -36.693106 kcal Electronic energy + Delta-G solvation = -24073.465620 eV Core-core repulsion = 20706.325481 eV Total energy + Delta-G solvation = -3367.140139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.14283 -39.19029 -37.16766 -34.11151 -33.52478 -33.29159 -30.82925 -29.74374 -28.70914 -27.92060 -26.86059 -24.90397 -23.50552 -22.31426 -21.86484 -21.01406 -20.44064 -19.22917 -17.97693 -16.71028 -16.36269 -15.95063 -15.58322 -15.22010 -15.10366 -15.02045 -14.67481 -14.49868 -14.24431 -13.58427 -13.37895 -13.21383 -12.84800 -12.62137 -12.48454 -12.28946 -12.19967 -11.78198 -11.48856 -11.45762 -11.36492 -11.20321 -11.15151 -10.98129 -10.89273 -10.80358 -10.71433 -10.66347 -10.39824 -9.93151 -9.65796 -9.60814 -9.24657 -8.42691 -7.89833 -7.25747 -6.07683 -4.11871 1.76793 1.92775 3.28449 3.29427 3.35767 3.39750 4.03813 4.13098 4.17681 4.29274 4.39205 4.45411 4.80970 4.86615 4.94465 5.06205 5.13176 5.16749 5.23657 5.28776 5.30360 5.33917 5.43479 5.47289 5.55871 5.59536 5.61271 5.67419 5.73216 5.75993 5.82077 5.83409 5.92508 5.99549 6.03357 6.11858 6.13980 6.18745 6.47866 6.66950 6.72343 6.81859 6.94593 7.46500 7.56222 7.68605 7.73772 7.87256 8.16011 8.28291 8.94107 9.52251 11.04036 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.002261 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.469811 B =12378.833266 C =13000.503789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.098 4.098 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.140 4.140 8 C 0.153 3.847 9 H 0.081 0.919 10 N -0.743 5.743 11 C 0.247 3.753 12 C -0.244 4.244 13 C -0.037 4.037 14 C -0.266 4.266 15 C 0.188 3.812 16 O -0.317 6.317 17 C 0.067 3.933 18 C 0.024 3.976 19 C -0.524 4.524 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.240 4.240 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.400 0.600 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 20.972 6.756 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.117 4.117 4 H 0.097 0.903 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.179 4.179 8 C 0.047 3.953 9 H 0.099 0.901 10 N -0.376 5.376 11 C 0.145 3.855 12 C -0.267 4.267 13 C -0.056 4.056 14 C -0.286 4.286 15 C 0.140 3.860 16 O -0.230 6.230 17 C -0.007 4.007 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.263 4.263 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.072 0.928 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.870 20.758 6.823 28.871 hybrid contribution 0.945 -0.376 -0.409 1.096 sum -17.926 20.382 6.414 27.891 Atomic orbital electron populations 1.21775 0.95570 1.01735 1.01756 1.21600 0.96064 0.96116 1.02336 1.22044 0.94333 0.96804 0.98516 0.90258 1.22505 0.97913 0.98585 0.96582 1.22524 0.94725 0.98080 1.00996 1.22913 0.97964 0.99082 0.97928 1.21514 0.92511 0.83324 0.97931 0.90092 1.45007 1.18976 1.07797 1.65771 1.17390 0.85297 0.92441 0.90402 1.20406 0.97799 0.97534 1.10951 1.20616 0.94284 0.95799 0.94918 1.21128 1.03081 0.93006 1.11397 1.18820 0.91713 0.84401 0.91097 1.86141 1.38117 1.23598 1.75100 1.23302 0.79951 1.02285 0.95206 1.19133 0.96638 0.86908 0.98597 1.21021 1.03090 0.93233 1.38885 0.92297 1.24998 0.97888 0.95879 0.95516 1.69987 1.38246 0.98835 1.45773 0.86434 0.83585 0.78266 0.79118 1.19629 1.20860 1.20866 1.19658 0.97987 0.95455 1.13214 0.92768 0.92685 0.92696 0.91039 0.91769 0.91653 0.91390 0.91475 0.91439 0.90945 0.91407 0.76195 0.86711 0.86483 0.85672 0.93122 0.93121 0.95444 0.95443 0.92800 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.77 37.16 0.36 -0.55 16 2 C -0.12 -0.85 3.92 -26.73 -0.10 -0.95 16 3 C -0.10 -0.66 2.93 -89.50 -0.26 -0.92 16 4 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 5 C -0.12 -0.70 5.54 -24.88 -0.14 -0.84 16 6 C -0.13 -0.78 6.94 -24.55 -0.17 -0.95 16 7 C -0.14 -1.11 6.52 -25.07 -0.16 -1.27 16 8 C 0.15 1.27 2.87 -66.82 -0.19 1.08 16 9 H 0.08 0.70 6.52 -51.93 -0.34 0.37 16 10 N -0.74 -7.66 4.60 -51.11 -0.24 -7.89 16 11 C 0.25 3.34 6.65 -83.81 -0.56 2.78 16 12 C -0.24 -3.20 9.21 -39.35 -0.36 -3.56 16 13 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 14 C -0.27 -4.44 9.04 -39.39 -0.36 -4.79 16 15 C 0.19 3.46 6.68 -39.24 -0.26 3.20 16 16 O -0.32 -6.82 10.13 -19.41 -0.20 -7.02 16 17 C 0.07 1.48 4.68 37.16 0.17 1.65 16 18 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 19 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 23 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.24 -3.85 9.83 -39.23 -0.39 -4.24 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.30 7.51 -51.92 -0.39 -0.09 16 31 H 0.07 0.57 7.40 -51.92 -0.38 0.19 16 32 H 0.06 0.44 7.12 -51.93 -0.37 0.07 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.42 7.76 -51.93 -0.40 0.02 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 3.79 5.85 -40.82 -0.24 3.55 16 40 H 0.11 1.26 6.25 -52.49 -0.33 0.93 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 43 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 44 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -30.45 376.91 -10.60 -41.05 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.19 Total: 1.07 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.38 Total: -23.32 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.50 Total: -33.95 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.20 Total: -7.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.45 -10.60 -41.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165147065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.355 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds