Wall clock time and date at job start Tue Mar 31 2020 10:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47428 * 2 1 4 4 H 1.08999 * 110.05425 * 306.42615 * 3 2 1 5 5 C 1.54266 * 110.02878 * 67.83723 * 3 2 1 6 6 C 1.55238 * 104.23333 * 142.89793 * 5 3 2 7 7 C 1.54894 * 102.58338 * 322.08174 * 6 5 3 8 8 C 1.53869 * 110.03216 * 185.00100 * 3 2 1 9 9 H 1.09001 * 110.02983 * 121.43438 * 8 3 2 10 10 N 1.46494 * 110.03514 * 0.02562 * 8 3 2 11 11 C 1.39672 * 120.00289 * 156.37825 * 10 8 3 12 12 C 1.38972 * 120.04240 * 359.97438 * 11 10 8 13 13 C 1.38116 * 120.03517 * 179.97438 * 12 11 10 14 14 C 1.38220 * 120.12465 * 0.05317 * 13 12 11 15 15 C 1.38760 * 120.09743 * 359.97388 * 14 13 12 16 16 O 1.35895 * 120.02141 * 180.02562 * 15 14 13 17 17 C 1.42893 * 116.99939 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.47326 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47329 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00318 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00370 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46959 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47507 * 119.99608 * 23 21 19 26 26 H 1.48501 * 109.47170 * 239.99707 * 23 21 19 27 27 C 1.38626 * 119.96331 * 359.69849 * 15 14 13 28 28 H 1.08997 * 109.47076 * 59.99493 * 1 2 3 29 29 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46610 * 299.99387 * 1 2 3 31 31 H 1.09008 * 109.47270 * 240.00251 * 2 1 3 32 32 H 1.08999 * 109.47565 * 120.00326 * 2 1 3 33 33 H 1.09005 * 110.48526 * 261.57665 * 5 3 2 34 34 H 1.09007 * 110.48724 * 24.08149 * 5 3 2 35 35 H 1.08996 * 110.89448 * 203.79739 * 6 5 3 36 36 H 1.08993 * 110.76342 * 80.31404 * 6 5 3 37 37 H 1.09002 * 110.48891 * 279.18596 * 7 6 5 38 38 H 1.08998 * 110.48494 * 156.67683 * 7 6 5 39 39 H 0.97003 * 120.00592 * 336.37654 * 10 8 3 40 40 H 1.07996 * 119.98318 * 0.02562 * 12 11 10 41 41 H 1.08000 * 119.93625 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.94954 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.47507 * 300.00421 * 17 16 15 44 44 H 1.09000 * 109.47264 * 60.00243 * 17 16 15 45 45 H 1.09002 * 109.47028 * 300.00021 * 18 17 16 46 46 H 1.09000 * 109.46836 * 59.99877 * 18 17 16 47 47 H 0.96991 * 120.00287 * 180.02562 * 22 21 19 48 48 H 1.07999 * 120.06410 * 180.32016 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5915 1.9976 -0.8239 5 6 1.7007 2.1229 1.3423 6 6 2.9314 3.0224 1.6361 7 6 4.1126 2.1495 1.1440 8 6 3.5735 1.4594 -0.1260 9 1 3.8692 2.0227 -1.0111 10 7 4.0853 0.0892 -0.2088 11 6 5.3239 -0.1588 -0.8049 12 6 6.0712 0.8934 -1.3202 13 6 7.2962 0.6480 -1.9091 14 6 7.7814 -0.6438 -1.9886 15 6 7.0394 -1.6985 -1.4763 16 8 7.5181 -2.9679 -1.5547 17 6 8.7919 -3.1435 -2.1781 18 6 9.1614 -4.6282 -2.1740 19 6 10.5045 -4.8134 -2.8319 20 1 11.0411 -3.9577 -3.2143 21 6 11.0483 -6.0753 -2.9457 22 7 10.3951 -7.1173 -2.4796 23 14 12.7134 -6.3048 -3.7606 24 1 13.2373 -4.9853 -4.1964 25 1 13.6581 -6.9178 -2.7926 26 1 12.5684 -7.1938 -4.9413 27 6 5.8125 -1.4558 -0.8783 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8000 2.7291 1.2457 34 1 1.5751 1.3770 2.1271 35 1 3.0191 3.2246 2.7036 36 1 2.8752 3.9515 1.0691 37 1 4.3788 1.4080 1.8973 38 1 4.9734 2.7732 0.9031 39 1 3.5641 -0.6458 0.1503 40 1 5.6944 1.9037 -1.2594 41 1 7.8759 1.4670 -2.3087 42 1 8.7394 -0.8325 -2.4500 43 1 8.7462 -2.7836 -3.2060 44 1 9.5459 -2.5795 -1.6290 45 1 9.2071 -4.9884 -1.1463 46 1 8.4073 -5.1918 -2.7234 47 1 10.7778 -8.0049 -2.5593 48 1 5.2360 -2.2749 -0.4744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165147065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:34 Heat of formation + Delta-G solvation = -51.685131 kcal Electronic energy + Delta-G solvation = -24074.115723 eV Core-core repulsion = 20706.325481 eV Total energy + Delta-G solvation = -3367.790242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18077 -40.24505 -38.40502 -35.54449 -34.95305 -34.06941 -32.56494 -31.09838 -29.88711 -28.47357 -27.75862 -26.82628 -24.24345 -23.69015 -23.10937 -22.00199 -21.53664 -20.07433 -19.21377 -18.38158 -17.47649 -17.11717 -16.90759 -16.64547 -16.56558 -16.10336 -15.84226 -15.29820 -15.10745 -14.53365 -14.42517 -14.32907 -14.21284 -14.02149 -13.67574 -13.39989 -13.20110 -12.99652 -12.83357 -12.61318 -12.51426 -12.42129 -12.18492 -11.98195 -11.85425 -11.83080 -11.60583 -11.54095 -11.48893 -11.36686 -11.33316 -11.30358 -10.76421 -10.62860 -9.21487 -8.30590 -8.26835 -6.40470 0.58193 0.71193 1.40849 1.42086 1.55730 2.18728 2.41110 2.76951 2.97186 3.07446 3.57631 3.71334 3.82775 4.00411 4.22827 4.25941 4.28785 4.30248 4.32356 4.37127 4.41581 4.51530 4.52621 4.61372 4.69574 4.70168 4.74922 4.80344 4.81505 4.93372 4.97209 5.06716 5.13669 5.19581 5.24756 5.27356 5.31124 5.34386 5.41156 5.42510 5.46864 5.52085 5.54130 5.66485 5.67808 5.79488 6.07382 6.47392 6.63071 6.74511 6.82289 7.29569 8.86695 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.002261 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.469811 B =12378.833266 C =13000.503789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.093 4.093 4 H 0.087 0.913 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.139 4.139 8 C 0.148 3.852 9 H 0.084 0.916 10 N -0.734 5.734 11 C 0.255 3.745 12 C -0.237 4.237 13 C -0.032 4.032 14 C -0.283 4.283 15 C 0.152 3.848 16 O -0.343 6.343 17 C 0.087 3.913 18 C 0.028 3.972 19 C -0.544 4.544 20 H 0.071 0.929 21 C 0.000 4.000 22 N -0.932 5.932 23 Si 0.978 3.022 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.256 4.256 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.403 0.597 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.059 0.941 44 H 0.059 0.941 45 H -0.002 1.002 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.059 23.911 6.473 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.178 4.178 8 C 0.043 3.957 9 H 0.102 0.898 10 N -0.365 5.365 11 C 0.150 3.850 12 C -0.259 4.259 13 C -0.051 4.051 14 C -0.304 4.304 15 C 0.106 3.894 16 O -0.257 6.257 17 C 0.012 3.988 18 C -0.009 4.009 19 C -0.582 4.582 20 H 0.089 0.911 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.801 3.199 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.279 4.279 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.242 0.758 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.076 0.924 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.210 23.734 6.560 31.230 hybrid contribution 0.855 -1.192 -0.239 1.487 sum -18.355 22.541 6.321 29.748 Atomic orbital electron populations 1.21752 0.94789 1.01779 1.02273 1.21571 0.96755 0.96207 1.01541 1.22025 0.92981 0.96742 0.99424 0.89446 1.22490 0.98376 0.98549 0.95813 1.22514 0.93770 0.98135 1.01409 1.22875 0.98775 0.98960 0.97195 1.21737 0.93695 0.81916 0.98349 0.89756 1.45165 1.17736 1.09141 1.64433 1.17466 0.86239 0.91556 0.89769 1.20760 0.97177 0.98604 1.09343 1.20962 0.94685 0.95390 0.94014 1.21201 1.03098 0.93830 1.12267 1.19147 0.93154 0.83523 0.93566 1.86050 1.37638 1.26109 1.75914 1.22835 0.81005 0.98936 0.95987 1.18978 0.95971 0.89815 0.96165 1.21423 1.03679 0.93998 1.39105 0.91129 1.26069 1.02401 0.95409 0.95966 1.70129 1.40451 0.99532 1.46990 0.85212 0.77924 0.78784 0.77979 1.18114 1.20174 1.20174 1.19767 0.97594 0.96758 1.13803 0.92485 0.92956 0.91896 0.92401 0.92017 0.90366 0.91699 0.91057 0.90374 0.92412 0.91352 0.75803 0.83832 0.83349 0.86120 0.92293 0.92302 0.98390 0.98381 0.92433 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.77 71.98 0.70 -0.87 16 2 C -0.12 -1.52 3.92 30.60 0.12 -1.40 16 3 C -0.09 -1.03 2.93 -10.07 -0.03 -1.06 16 4 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 5 C -0.11 -1.06 5.54 31.79 0.18 -0.88 16 6 C -0.12 -1.16 6.94 32.01 0.22 -0.94 16 7 C -0.14 -1.88 6.52 31.67 0.21 -1.68 16 8 C 0.15 2.11 2.87 45.71 0.13 2.25 16 9 H 0.08 1.19 6.52 -2.39 -0.02 1.18 16 10 N -0.73 -14.18 4.60 -315.61 -1.45 -15.63 16 11 C 0.25 6.61 6.65 38.20 0.25 6.87 16 12 C -0.24 -5.61 9.21 22.42 0.21 -5.40 16 13 C -0.03 -0.83 10.03 22.24 0.22 -0.60 16 14 C -0.28 -9.42 9.04 22.39 0.20 -9.22 16 15 C 0.15 5.80 6.68 22.49 0.15 5.95 16 16 O -0.34 -15.58 10.13 -92.36 -0.94 -16.52 16 17 C 0.09 4.02 4.68 71.98 0.34 4.35 16 18 C 0.03 1.58 5.34 29.85 0.16 1.74 16 19 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 20 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 21 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 22 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 23 Si 0.98 44.22 29.54 68.60 2.03 46.25 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C -0.26 -8.40 9.83 22.49 0.22 -8.18 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.57 7.51 -2.38 -0.02 0.55 16 31 H 0.06 0.88 7.40 -2.38 -0.02 0.86 16 32 H 0.06 0.79 7.12 -2.39 -0.02 0.77 16 33 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.06 0.66 7.76 -2.38 -0.02 0.64 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.97 8.05 -2.39 -0.02 0.95 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.40 7.39 5.85 -92.71 -0.54 6.84 16 40 H 0.14 2.58 6.25 -2.91 -0.02 2.56 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.12 4.02 6.29 -2.91 -0.02 4.00 16 43 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 44 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 47 H 0.27 15.32 8.31 -92.72 -0.77 14.55 16 48 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -67.68 376.91 4.29 -63.39 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.38 Total: 19.72 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.98 Total: -39.85 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.17 Total: -72.99 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.94 Total: -16.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.68 4.29 -63.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165147065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.708 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds