Wall clock time and date at job start Tue Mar 31 2020 09:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47103 * 2 1 4 4 C 1.52999 * 109.47484 * 239.99888 * 2 1 3 5 5 H 1.09002 * 109.47270 * 174.68194 * 4 2 1 6 6 C 1.52991 * 109.47158 * 294.68184 * 4 2 1 7 7 C 1.50700 * 109.47259 * 293.98413 * 6 4 2 8 8 O 1.21279 * 120.00000 * 358.08556 * 7 6 4 9 9 N 1.34783 * 120.00105 * 178.09400 * 7 6 4 10 10 C 1.46494 * 119.99857 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47052 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47240 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47021 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99734 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99954 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47026 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47107 * 119.99767 * 17 15 13 20 20 H 1.48493 * 109.47071 * 240.00021 * 17 15 13 21 21 C 1.50701 * 109.46834 * 54.68472 * 4 2 1 22 22 C 1.38239 * 119.99562 * 286.30404 * 21 4 2 23 23 C 1.38235 * 119.99529 * 179.81299 * 22 21 4 24 24 C 1.38235 * 120.00308 * 0.39991 * 23 22 21 25 25 C 1.38237 * 119.99846 * 359.85640 * 24 23 22 26 26 C 1.38230 * 119.99899 * 359.95390 * 25 24 23 27 27 H 1.09004 * 109.46982 * 55.17881 * 1 2 3 28 28 H 1.08997 * 109.47815 * 295.17687 * 1 2 3 29 29 H 1.09002 * 109.47287 * 175.17801 * 1 2 3 30 30 H 1.08997 * 109.46972 * 119.99640 * 2 1 3 31 31 H 1.09003 * 109.46823 * 65.60104 * 3 2 1 32 32 H 1.09002 * 109.46990 * 185.59727 * 3 2 1 33 33 H 1.08993 * 109.47202 * 305.59991 * 3 2 1 34 34 H 1.08999 * 109.47147 * 53.98060 * 6 4 2 35 35 H 1.08997 * 109.47503 * 173.98068 * 6 4 2 36 36 H 0.97003 * 119.99682 * 359.97438 * 9 7 6 37 37 H 1.09009 * 109.47138 * 299.99712 * 10 9 7 38 38 H 1.08996 * 109.47466 * 59.99344 * 10 9 7 39 39 H 1.08999 * 109.47200 * 300.00062 * 11 10 9 40 40 H 1.08998 * 109.46894 * 60.00018 * 11 10 9 41 41 H 1.08999 * 109.47441 * 300.00363 * 12 11 10 42 42 H 1.09008 * 109.46933 * 60.00293 * 12 11 10 43 43 H 0.96998 * 120.00288 * 180.02562 * 16 15 13 44 44 H 1.07997 * 120.00398 * 0.02562 * 22 21 4 45 45 H 1.08004 * 119.99806 * 180.23463 * 23 22 21 46 46 H 1.08002 * 120.00039 * 179.83608 * 24 23 22 47 47 H 1.07996 * 119.99702 * 179.97438 * 25 24 23 48 48 H 1.07996 * 119.99948 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1259 -0.6395 -1.2981 6 6 1.6422 -2.1971 -1.1841 7 6 2.3663 -2.8627 -0.0424 8 8 3.1520 -2.2285 0.6294 9 7 2.1408 -4.1629 0.2322 10 6 2.8451 -4.8101 1.3417 11 6 2.4108 -6.2740 1.4369 12 6 3.1469 -6.9501 2.5954 13 6 2.7196 -8.3923 2.6886 14 1 1.9957 -8.7872 1.9912 15 6 3.2527 -9.2075 3.6645 16 7 4.1345 -8.7267 4.5135 17 14 2.7225 -10.9949 3.7806 18 1 1.7270 -11.2860 2.7179 19 1 3.9059 -11.8747 3.6053 20 1 2.1126 -11.2449 5.1113 21 6 1.4331 -0.0909 -2.4761 22 6 0.1041 -0.3156 -2.7830 23 6 -0.4536 0.2657 -3.9064 24 6 0.3197 1.0650 -4.7273 25 6 1.6501 1.2854 -4.4232 26 6 2.2068 0.7073 -3.2978 27 1 -0.3633 0.5868 -0.8437 28 1 -0.3634 0.4372 0.9300 29 1 -0.3634 -1.0240 -0.0864 30 1 1.8932 -0.5138 0.8900 31 1 1.7608 1.9266 0.9359 32 1 3.1253 1.4441 -0.1002 33 1 1.5971 1.9845 -0.8355 34 1 0.5664 -2.2769 -1.0279 35 1 1.9107 -2.6874 -2.1198 36 1 1.5122 -4.6701 -0.3050 37 1 3.9202 -4.7601 1.1682 38 1 2.6034 -4.2984 2.2733 39 1 1.3359 -6.3236 1.6106 40 1 2.6523 -6.7859 0.5054 41 1 4.2217 -6.9006 2.4213 42 1 2.9058 -6.4383 3.5271 43 1 4.5099 -9.3003 5.1997 44 1 -0.4994 -0.9426 -2.1434 45 1 -1.4930 0.0932 -4.1441 46 1 -0.1154 1.5171 -5.6064 47 1 2.2543 1.9096 -5.0648 48 1 3.2460 0.8798 -3.0600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171498980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:39 Heat of formation + Delta-G solvation = -48.398793 kcal Electronic energy + Delta-G solvation = -24201.745905 eV Core-core repulsion = 20834.098169 eV Total energy + Delta-G solvation = -3367.647736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55367 -39.17874 -36.65763 -35.28029 -33.32203 -31.93883 -31.32339 -31.14536 -29.83649 -27.37922 -26.82987 -24.82737 -22.96892 -22.62126 -21.92585 -20.73272 -20.14974 -19.26738 -17.14899 -16.62337 -16.37669 -15.86852 -15.49754 -15.48124 -15.25107 -14.74936 -14.48641 -14.43948 -13.84097 -13.67873 -13.44706 -13.35045 -12.81879 -12.72608 -12.29725 -12.20041 -12.13658 -11.93248 -11.83520 -11.68384 -11.42469 -11.15696 -10.93376 -10.86081 -10.75128 -10.71171 -10.57732 -10.43706 -9.87810 -9.77804 -9.34788 -9.11402 -9.09608 -8.86171 -8.74796 -8.38645 -6.02964 -4.06044 1.13779 1.17651 2.80651 3.29080 3.36278 3.38609 3.41694 3.57795 4.42968 4.44729 4.50933 4.76510 4.78044 4.78778 4.87005 4.96755 5.05151 5.17265 5.26560 5.27901 5.32865 5.37998 5.44869 5.56874 5.69718 5.73328 5.75633 5.76846 5.77829 5.81711 5.86566 5.90167 6.10788 6.15949 6.19845 6.24450 6.28914 6.39219 6.47132 6.52823 6.59331 6.78467 6.83702 7.00007 7.62640 7.73042 7.74979 7.95882 8.36387 8.42974 9.00906 9.58245 11.08345 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.002211 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.429738 B =12662.919793 C =13062.182063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.028 4.028 5 H 0.088 0.912 6 C -0.139 4.139 7 C 0.507 3.493 8 O -0.541 6.541 9 N -0.728 5.728 10 C 0.116 3.884 11 C -0.121 4.121 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.067 4.067 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.114 4.114 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 21.107 -17.686 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.047 4.047 5 H 0.106 0.894 6 C -0.179 4.179 7 C 0.293 3.707 8 O -0.419 6.419 9 N -0.379 5.379 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.067 4.067 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.143 0.857 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.201 21.505 -17.033 28.632 hybrid contribution -0.554 -1.321 -0.156 1.441 sum -8.755 20.183 -17.189 27.919 Atomic orbital electron populations 1.22189 0.95913 1.01429 1.01868 1.21201 0.95262 0.96380 0.98223 1.21789 1.00993 0.95906 1.01246 1.19981 1.00812 0.91905 0.91998 0.89400 1.21840 1.01731 0.96190 0.98151 1.20584 0.82614 0.82051 0.85403 1.90675 1.36228 1.63699 1.51303 1.46256 1.45833 1.10955 1.34816 1.21625 0.96503 0.94217 0.88293 1.21883 1.00682 0.91640 1.01660 1.19037 0.95539 0.94878 0.91992 1.21240 1.24619 0.95370 1.14759 0.92603 1.25040 0.95091 0.98695 0.95713 1.69974 1.29225 1.35961 1.18102 0.86525 0.78456 0.85044 0.77899 1.19764 1.20991 1.20998 1.19849 0.93929 0.97232 0.95679 1.21188 0.94884 1.00294 0.96993 1.21141 0.99798 0.97937 0.95148 1.21117 0.94367 0.99326 0.99772 1.21121 0.95384 1.00029 0.97345 1.21079 0.99822 0.97605 0.94740 0.91958 0.92907 0.92764 0.88850 0.92982 0.92694 0.93000 0.88715 0.88844 0.76885 0.91857 0.91851 0.92770 0.92773 0.96293 0.96292 0.92975 0.85732 0.86286 0.86458 0.86323 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 7.57 37.15 0.28 -1.14 16 2 C -0.09 -0.97 2.49 -90.62 -0.23 -1.20 16 3 C -0.14 -1.39 8.91 37.16 0.33 -1.06 16 4 C -0.03 -0.28 1.55 -91.78 -0.14 -0.42 16 5 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 6 C -0.14 -1.36 4.57 -27.89 -0.13 -1.49 16 7 C 0.51 6.99 7.47 -10.98 -0.08 6.91 16 8 O -0.54 -9.43 14.13 5.56 0.08 -9.36 16 9 N -0.73 -10.02 5.56 -60.29 -0.33 -10.35 16 10 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 11 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.07 -0.60 3.71 -104.62 -0.39 -0.99 16 22 C -0.12 -0.95 6.76 -39.58 -0.27 -1.22 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 24 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.11 -1.00 9.50 -39.59 -0.38 -1.37 16 27 H 0.06 0.53 5.71 -51.93 -0.30 0.24 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.46 5.76 -51.93 -0.30 0.16 16 30 H 0.09 1.24 6.04 -51.93 -0.31 0.93 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.48 7.43 -51.93 -0.39 0.10 16 34 H 0.09 0.76 5.21 -51.93 -0.27 0.49 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 4.36 8.47 -40.82 -0.35 4.02 16 37 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.12 0.89 5.38 -52.49 -0.28 0.61 16 45 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.95 7.99 -52.49 -0.42 0.53 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -31.90 378.28 -9.79 -41.70 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.05 Total: 1.37 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.90 Total: -19.42 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.40 Total: -36.43 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.90 -9.79 -41.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171498980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.703 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds