Wall clock time and date at job start Tue Mar 31 2020 08:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 C 1.52997 * 109.47313 * 120.00357 * 2 1 3 5 5 H 1.08999 * 109.47703 * 186.27667 * 4 2 1 6 6 C 1.53001 * 109.47653 * 66.27183 * 4 2 1 7 7 C 1.50695 * 109.46897 * 65.64569 * 6 4 2 8 8 C 1.38241 * 120.00302 * 271.53351 * 7 6 4 9 9 C 1.38232 * 120.00218 * 179.76926 * 8 7 6 10 10 C 1.38239 * 119.99856 * 0.49920 * 9 8 7 11 11 C 1.38234 * 119.99984 * 359.75043 * 10 9 8 12 12 C 1.38231 * 120.00189 * 91.80203 * 7 6 4 13 13 C 1.50704 * 109.46989 * 306.27155 * 4 2 1 14 14 O 1.21283 * 119.99918 * 100.47902 * 13 4 2 15 15 N 1.34779 * 120.00435 * 280.76327 * 13 4 2 16 16 C 1.46492 * 120.00333 * 185.31865 * 15 13 4 17 17 C 1.52999 * 109.47193 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.46948 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46910 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99741 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00280 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00653 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99539 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47334 * 90.00042 * 23 21 19 25 25 H 1.48501 * 109.46838 * 209.99562 * 23 21 19 26 26 H 1.48494 * 109.47236 * 329.99928 * 23 21 19 27 27 H 1.09006 * 109.46816 * 304.82361 * 1 2 3 28 28 H 1.08999 * 109.47519 * 64.82110 * 1 2 3 29 29 H 1.08994 * 109.47373 * 184.82554 * 1 2 3 30 30 H 1.09002 * 109.46984 * 239.99949 * 2 1 3 31 31 H 1.09003 * 109.47287 * 179.65120 * 3 2 1 32 32 H 1.09005 * 109.46822 * 299.64865 * 3 2 1 33 33 H 1.08999 * 109.47479 * 59.64835 * 3 2 1 34 34 H 1.08996 * 109.47509 * 185.64747 * 6 4 2 35 35 H 1.08995 * 109.47033 * 305.64952 * 6 4 2 36 36 H 1.08002 * 119.99395 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.99998 * 180.22807 * 9 8 7 38 38 H 1.07997 * 119.99789 * 179.72547 * 10 9 8 39 39 H 1.07999 * 120.00076 * 179.97438 * 11 10 9 40 40 H 1.08003 * 119.99945 * 0.02562 * 12 7 6 41 41 H 0.97001 * 119.99273 * 5.32113 * 15 13 4 42 42 H 1.09001 * 109.47284 * 300.00137 * 16 15 13 43 43 H 1.09005 * 109.46767 * 59.99943 * 16 15 13 44 44 H 1.09001 * 109.47403 * 300.00413 * 17 16 15 45 45 H 1.09000 * 109.46770 * 60.00819 * 17 16 15 46 46 H 1.08996 * 109.47064 * 299.99890 * 18 17 16 47 47 H 1.08992 * 109.46810 * 60.00325 * 18 17 16 48 48 H 0.96992 * 120.00520 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1242 -0.6251 1.3072 6 6 1.6628 -2.2021 1.1729 7 6 2.3979 -2.8493 0.0276 8 6 1.8425 -2.8495 -1.2383 9 6 2.5190 -3.4390 -2.2898 10 6 3.7462 -4.0374 -2.0734 11 6 4.2992 -4.0418 -0.8066 12 6 3.6251 -3.4477 0.2439 13 6 1.4149 -0.1062 2.4748 14 8 0.4739 -0.6498 3.0133 15 7 1.8979 1.0509 2.9692 16 6 1.3685 1.5886 4.2248 17 6 2.0826 2.8998 4.5593 18 6 1.5301 3.4611 5.8711 19 6 2.2330 4.7529 6.2003 20 1 2.9976 5.1350 5.5401 21 6 1.9000 5.4469 7.3441 22 7 2.5137 6.5739 7.6317 23 14 0.5780 4.7854 8.4862 24 1 1.2000 3.8997 9.5030 25 1 -0.1012 5.9180 9.1654 26 1 -0.4157 4.0129 7.6983 27 1 -0.3633 0.5869 0.8437 28 1 -0.3634 0.4372 -0.9300 29 1 -0.3634 -1.0240 0.0864 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0063 32 1 1.6818 1.9544 -0.8932 33 1 1.6716 1.9582 0.8868 34 1 1.9367 -2.6954 2.1055 35 1 0.5885 -2.2957 1.0143 36 1 0.8815 -2.3861 -1.4064 37 1 2.0867 -3.4359 -3.2796 38 1 4.2727 -4.5018 -2.8941 39 1 5.2578 -4.5096 -0.6374 40 1 4.0569 -3.4518 1.2339 41 1 2.5961 1.5275 2.4934 42 1 0.2995 1.7734 4.1189 43 1 1.5353 0.8696 5.0269 44 1 3.1515 2.7146 4.6653 45 1 1.9161 3.6189 3.7573 46 1 0.4612 3.6462 5.7654 47 1 1.6968 2.7418 6.6728 48 1 2.2797 7.0619 8.4366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172400670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:45 Heat of formation + Delta-G solvation = -47.538658 kcal Electronic energy + Delta-G solvation = -24471.549162 eV Core-core repulsion = 21103.938724 eV Total energy + Delta-G solvation = -3367.610437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56183 -39.25602 -36.45151 -35.50189 -33.37885 -32.78218 -31.43986 -31.14588 -29.32522 -27.62371 -27.01086 -24.81549 -23.01025 -22.78267 -21.58688 -21.01061 -20.52766 -19.14138 -17.12831 -16.90580 -16.59395 -16.13466 -15.66474 -15.41878 -15.22897 -14.72196 -14.41124 -14.10262 -13.89746 -13.78185 -13.57112 -13.33440 -12.98141 -12.81546 -12.70731 -12.38020 -12.13567 -11.99269 -11.93174 -11.83467 -11.29404 -11.26495 -11.10047 -11.06536 -10.97716 -10.89588 -10.71728 -10.16755 -9.95609 -9.77135 -9.47255 -9.23602 -9.16257 -8.92858 -8.81491 -8.56423 -6.07124 -4.05873 1.07758 1.12895 2.74919 3.29824 3.30722 3.38187 3.42451 3.56227 4.42191 4.43606 4.50843 4.60485 4.65823 4.72019 4.75629 4.86669 5.03644 5.13113 5.20891 5.26925 5.28631 5.30295 5.37795 5.49637 5.57324 5.61899 5.65224 5.66416 5.72276 5.76994 5.81243 5.86983 5.96039 6.01276 6.12266 6.18019 6.22643 6.25380 6.37316 6.40537 6.43965 6.70277 6.74255 6.79420 7.21801 7.35339 7.65082 7.76161 8.35526 8.49571 8.96629 9.55139 11.06093 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002431 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.829584 B =11513.987671 C =11575.155017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.163 4.163 4 C -0.098 4.098 5 H 0.092 0.908 6 C -0.066 4.066 7 C -0.075 4.075 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.127 4.127 11 C -0.119 4.119 12 C -0.117 4.117 13 C 0.518 3.482 14 O -0.543 6.543 15 N -0.727 5.727 16 C 0.113 3.887 17 C -0.113 4.113 18 C -0.011 4.011 19 C -0.522 4.522 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.399 0.601 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -20.298 -21.443 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 C -0.220 4.220 4 C -0.120 4.120 5 H 0.110 0.890 6 C -0.103 4.103 7 C -0.075 4.075 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.145 4.145 11 C -0.137 4.137 12 C -0.135 4.135 13 C 0.304 3.696 14 O -0.421 6.421 15 N -0.379 5.379 16 C -0.010 4.010 17 C -0.151 4.151 18 C -0.049 4.049 19 C -0.560 4.560 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.542 5.542 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.235 0.765 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.593 -20.533 -20.881 29.292 hybrid contribution -0.180 0.077 0.502 0.539 sum 0.413 -20.457 -20.379 28.878 Atomic orbital electron populations 1.21953 0.94637 1.02400 1.02022 1.21139 0.96508 0.96201 0.96777 1.22091 1.01195 0.95786 1.02970 1.21404 1.01359 0.95480 0.93731 0.88981 1.20473 1.00924 0.92564 0.96373 1.19905 0.94972 0.97810 0.94859 1.21120 1.00180 0.99648 0.92388 1.21151 0.95378 0.98338 0.98931 1.21139 0.96111 1.00169 0.97091 1.21148 0.99873 0.99613 0.93036 1.21115 0.94802 0.98338 0.99256 1.20467 0.83411 0.80804 0.84944 1.90687 1.27596 1.62486 1.61313 1.46386 1.41664 1.24033 1.25817 1.21644 0.98702 0.96296 0.84364 1.21702 0.99585 0.93486 1.00335 1.19502 0.96704 0.96584 0.92107 1.21095 1.21660 1.04985 1.08229 0.91021 1.25029 0.96149 0.94674 0.97648 1.69906 1.42311 1.15652 1.26308 0.86777 0.82660 0.78686 0.81187 1.20251 1.21363 1.18906 0.92242 0.92569 0.92094 0.89605 0.92280 0.92044 0.91678 0.90439 0.89520 0.85913 0.86206 0.86334 0.86185 0.86051 0.76522 0.91803 0.91933 0.92174 0.92145 0.96331 0.96778 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.58 37.16 0.32 -1.17 16 2 C -0.09 -0.78 2.40 -90.62 -0.22 -1.00 16 3 C -0.16 -1.42 8.42 37.16 0.31 -1.10 16 4 C -0.10 -0.99 1.96 -91.77 -0.18 -1.17 16 5 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.07 -0.65 4.10 -27.88 -0.11 -0.77 16 7 C -0.08 -0.67 4.78 -104.63 -0.50 -1.17 16 8 C -0.12 -0.94 7.83 -39.58 -0.31 -1.25 16 9 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 10 C -0.13 -0.94 10.05 -39.58 -0.40 -1.33 16 11 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 12 C -0.12 -1.00 9.69 -39.58 -0.38 -1.38 16 13 C 0.52 7.02 5.24 -10.98 -0.06 6.97 16 14 O -0.54 -9.33 16.00 5.55 0.09 -9.24 16 15 N -0.73 -9.76 4.61 -60.29 -0.28 -10.04 16 16 C 0.11 1.85 5.68 -4.05 -0.02 1.83 16 17 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 18 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 19 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 20 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 23 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 H 0.06 0.72 7.18 -51.93 -0.37 0.35 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.58 6.20 -51.93 -0.32 0.26 16 30 H 0.09 0.70 5.72 -51.93 -0.30 0.40 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.65 5.81 -51.93 -0.30 0.35 16 34 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.09 0.92 6.17 -51.93 -0.32 0.60 16 36 H 0.12 0.89 7.73 -52.49 -0.41 0.48 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.40 4.49 6.84 -40.82 -0.28 4.21 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 47 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -32.28 378.20 -9.56 -41.84 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.14 Total: 1.54 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.03 Total: -19.93 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.50 Total: -36.98 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.28 -9.56 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172400670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.701 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds