Wall clock time and date at job start Tue Mar 31 2020 08:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 C 1.52997 * 109.47313 * 120.00357 * 2 1 3 5 5 H 1.08999 * 109.47703 * 186.27667 * 4 2 1 6 6 C 1.53001 * 109.47653 * 66.27183 * 4 2 1 7 7 C 1.50695 * 109.46897 * 65.64569 * 6 4 2 8 8 C 1.38241 * 120.00302 * 271.53351 * 7 6 4 9 9 C 1.38232 * 120.00218 * 179.76926 * 8 7 6 10 10 C 1.38239 * 119.99856 * 0.49920 * 9 8 7 11 11 C 1.38234 * 119.99984 * 359.75043 * 10 9 8 12 12 C 1.38231 * 120.00189 * 91.80203 * 7 6 4 13 13 C 1.50704 * 109.46989 * 306.27155 * 4 2 1 14 14 O 1.21283 * 119.99918 * 100.47902 * 13 4 2 15 15 N 1.34779 * 120.00435 * 280.76327 * 13 4 2 16 16 C 1.46492 * 120.00333 * 185.31865 * 15 13 4 17 17 C 1.52999 * 109.47193 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.46948 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46910 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99741 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00280 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00653 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99539 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47334 * 90.00042 * 23 21 19 25 25 H 1.48501 * 109.46838 * 209.99562 * 23 21 19 26 26 H 1.48494 * 109.47236 * 329.99928 * 23 21 19 27 27 H 1.09006 * 109.46816 * 304.82361 * 1 2 3 28 28 H 1.08999 * 109.47519 * 64.82110 * 1 2 3 29 29 H 1.08994 * 109.47373 * 184.82554 * 1 2 3 30 30 H 1.09002 * 109.46984 * 239.99949 * 2 1 3 31 31 H 1.09003 * 109.47287 * 179.65120 * 3 2 1 32 32 H 1.09005 * 109.46822 * 299.64865 * 3 2 1 33 33 H 1.08999 * 109.47479 * 59.64835 * 3 2 1 34 34 H 1.08996 * 109.47509 * 185.64747 * 6 4 2 35 35 H 1.08995 * 109.47033 * 305.64952 * 6 4 2 36 36 H 1.08002 * 119.99395 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.99998 * 180.22807 * 9 8 7 38 38 H 1.07997 * 119.99789 * 179.72547 * 10 9 8 39 39 H 1.07999 * 120.00076 * 179.97438 * 11 10 9 40 40 H 1.08003 * 119.99945 * 0.02562 * 12 7 6 41 41 H 0.97001 * 119.99273 * 5.32113 * 15 13 4 42 42 H 1.09001 * 109.47284 * 300.00137 * 16 15 13 43 43 H 1.09005 * 109.46767 * 59.99943 * 16 15 13 44 44 H 1.09001 * 109.47403 * 300.00413 * 17 16 15 45 45 H 1.09000 * 109.46770 * 60.00819 * 17 16 15 46 46 H 1.08996 * 109.47064 * 299.99890 * 18 17 16 47 47 H 1.08992 * 109.46810 * 60.00325 * 18 17 16 48 48 H 0.96992 * 120.00520 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1242 -0.6251 1.3072 6 6 1.6628 -2.2021 1.1729 7 6 2.3979 -2.8493 0.0276 8 6 1.8425 -2.8495 -1.2383 9 6 2.5190 -3.4390 -2.2898 10 6 3.7462 -4.0374 -2.0734 11 6 4.2992 -4.0418 -0.8066 12 6 3.6251 -3.4477 0.2439 13 6 1.4149 -0.1062 2.4748 14 8 0.4739 -0.6498 3.0133 15 7 1.8979 1.0509 2.9692 16 6 1.3685 1.5886 4.2248 17 6 2.0826 2.8998 4.5593 18 6 1.5301 3.4611 5.8711 19 6 2.2330 4.7529 6.2003 20 1 2.9976 5.1350 5.5401 21 6 1.9000 5.4469 7.3441 22 7 2.5137 6.5739 7.6317 23 14 0.5780 4.7854 8.4862 24 1 1.2000 3.8997 9.5030 25 1 -0.1012 5.9180 9.1654 26 1 -0.4157 4.0129 7.6983 27 1 -0.3633 0.5869 0.8437 28 1 -0.3634 0.4372 -0.9300 29 1 -0.3634 -1.0240 0.0864 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0063 32 1 1.6818 1.9544 -0.8932 33 1 1.6716 1.9582 0.8868 34 1 1.9367 -2.6954 2.1055 35 1 0.5885 -2.2957 1.0143 36 1 0.8815 -2.3861 -1.4064 37 1 2.0867 -3.4359 -3.2796 38 1 4.2727 -4.5018 -2.8941 39 1 5.2578 -4.5096 -0.6374 40 1 4.0569 -3.4518 1.2339 41 1 2.5961 1.5275 2.4934 42 1 0.2995 1.7734 4.1189 43 1 1.5353 0.8696 5.0269 44 1 3.1515 2.7146 4.6653 45 1 1.9161 3.6189 3.7573 46 1 0.4612 3.6462 5.7654 47 1 1.6968 2.7418 6.6728 48 1 2.2797 7.0619 8.4366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172400670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:32 Heat of formation + Delta-G solvation = -64.941232 kcal Electronic energy + Delta-G solvation = -24472.303794 eV Core-core repulsion = 21103.938724 eV Total energy + Delta-G solvation = -3368.365070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 16.24 seconds Orbital eigenvalues (eV) -41.50298 -39.99052 -37.40888 -36.85044 -35.16523 -33.60235 -33.15458 -31.71950 -30.16947 -28.97771 -28.02349 -25.81520 -24.41216 -23.45228 -22.32872 -22.23378 -21.87141 -20.20386 -18.93579 -17.94529 -17.41747 -17.14842 -16.83289 -16.24696 -16.21672 -16.01189 -15.75911 -15.19477 -14.81054 -14.71405 -14.63460 -14.46013 -14.13339 -13.83276 -13.67140 -13.61020 -13.44278 -13.11012 -12.87124 -12.74754 -12.67658 -12.61791 -12.00552 -11.88433 -11.87058 -11.81016 -11.77973 -11.69766 -11.60619 -11.47153 -11.33944 -10.77056 -10.66525 -10.03355 -9.74125 -9.54288 -8.30069 -6.33897 0.48497 0.55853 1.35825 1.37578 1.49336 1.66536 2.23811 2.35450 2.93973 3.05536 3.59241 3.74966 3.83569 4.03445 4.05925 4.07747 4.19008 4.21861 4.25361 4.36586 4.40113 4.48644 4.51039 4.58135 4.70459 4.73405 4.76522 4.87568 4.91214 4.93945 4.95551 5.02028 5.02931 5.06207 5.17337 5.23995 5.24845 5.39001 5.42129 5.44805 5.50945 5.54498 5.64345 5.64402 5.69478 5.78642 6.18223 6.26703 6.58507 6.74096 7.27211 7.30908 8.86276 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002431 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.829584 B =11513.987671 C =11575.155017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.164 4.164 4 C -0.090 4.090 5 H 0.108 0.892 6 C -0.059 4.059 7 C -0.085 4.085 8 C -0.123 4.123 9 C -0.125 4.125 10 C -0.131 4.131 11 C -0.126 4.126 12 C -0.130 4.130 13 C 0.518 3.482 14 O -0.581 6.581 15 N -0.720 5.720 16 C 0.126 3.874 17 C -0.100 4.100 18 C -0.012 4.012 19 C -0.530 4.530 20 H 0.038 0.962 21 C 0.004 3.996 22 N -0.949 5.949 23 Si 0.947 3.053 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.249 1.249 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.412 0.588 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 -21.993 -23.000 31.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.221 4.221 4 C -0.111 4.111 5 H 0.127 0.873 6 C -0.097 4.097 7 C -0.085 4.085 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.148 4.148 13 C 0.306 3.694 14 O -0.461 6.461 15 N -0.373 5.373 16 C 0.002 3.998 17 C -0.138 4.138 18 C -0.050 4.050 19 C -0.568 4.568 20 H 0.056 0.944 21 C -0.192 4.192 22 N -0.590 5.590 23 Si 0.770 3.230 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.173 1.173 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.249 0.751 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.612 -22.234 -22.470 31.616 hybrid contribution -0.116 0.611 0.908 1.100 sum 0.496 -21.623 -21.562 30.540 Atomic orbital electron populations 1.21936 0.95372 1.01933 1.01585 1.21122 0.95779 0.96447 0.96528 1.22106 1.02088 0.95307 1.02632 1.21414 1.01931 0.95429 0.92318 0.87349 1.20359 1.00450 0.92410 0.96490 1.19819 0.95301 0.98666 0.94725 1.21255 1.00564 0.99936 0.92317 1.21429 0.95433 0.97792 0.99612 1.21459 0.96160 0.99720 0.97573 1.21405 1.00543 0.99404 0.93024 1.21267 0.94913 0.98692 0.99893 1.21081 0.82720 0.80195 0.85415 1.90669 1.29379 1.63438 1.62646 1.46254 1.41845 1.24222 1.24932 1.21281 0.97888 0.95033 0.85619 1.21477 0.99775 0.94438 0.98089 1.19465 0.96303 0.94556 0.94661 1.21454 1.20999 1.06760 1.07570 0.94395 1.25979 0.98719 0.94913 0.99636 1.70050 1.44375 1.17313 1.27282 0.85705 0.79872 0.78302 0.79073 1.19216 1.20993 1.17257 0.94949 0.91048 0.92223 0.88080 0.90911 0.91195 0.93231 0.91595 0.90565 0.85274 0.84326 0.84365 0.84605 0.85690 0.75060 0.92753 0.92446 0.91718 0.91871 0.96233 0.96235 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.58 71.98 0.62 -2.19 16 2 C -0.08 -1.29 2.40 -10.80 -0.03 -1.31 16 3 C -0.16 -2.52 8.42 71.98 0.61 -1.92 16 4 C -0.09 -1.69 1.96 -11.54 -0.02 -1.71 16 5 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.06 -1.14 4.10 29.85 0.12 -1.02 16 7 C -0.09 -1.40 4.78 -19.87 -0.09 -1.50 16 8 C -0.12 -1.78 7.83 22.27 0.17 -1.60 16 9 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 10 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 11 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 12 C -0.13 -2.02 9.69 22.27 0.22 -1.80 16 13 C 0.52 13.76 5.24 87.66 0.46 14.22 16 14 O -0.58 -20.05 16.00 -3.04 -0.05 -20.10 16 15 N -0.72 -18.66 4.61 -463.06 -2.13 -20.79 16 16 C 0.13 4.03 5.68 86.38 0.49 4.52 16 17 C -0.10 -3.63 5.27 30.60 0.16 -3.47 16 18 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 19 C -0.53 -30.15 9.66 25.60 0.25 -29.90 16 20 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 21 C 0.00 0.26 5.47 84.65 0.46 0.72 16 22 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 23 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 27 H 0.03 0.77 7.18 -2.38 -0.02 0.75 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.11 6.20 -2.39 -0.01 1.09 16 30 H 0.10 1.39 5.72 -2.39 -0.01 1.37 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 0.92 5.81 -2.39 -0.01 0.91 16 34 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 35 H 0.08 1.61 6.17 -2.39 -0.01 1.59 16 36 H 0.13 1.63 7.73 -2.91 -0.02 1.61 16 37 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.41 8.66 6.84 -92.71 -0.63 8.03 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 47 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 48 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -70.12 378.20 4.44 -65.68 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.24 Total: 19.38 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 4.21 Total: -31.54 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.84 Total: -79.88 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -70.12 4.44 -65.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172400670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.740 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.24 seconds