Wall clock time and date at job start Tue Mar 31 2020 09:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00326 * 2 1 4 4 C 1.53002 * 109.47181 * 124.99742 * 3 2 1 5 5 C 1.52998 * 109.47112 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46998 * 55.00229 * 5 4 3 7 7 C 1.53002 * 109.47077 * 175.00033 * 5 4 3 8 8 C 1.53007 * 109.47229 * 294.37235 * 7 5 4 9 9 C 1.52997 * 109.47296 * 185.29616 * 8 7 5 10 10 N 1.46896 * 109.47126 * 294.99852 * 5 4 3 11 11 C 1.46900 * 110.99850 * 151.32708 * 10 5 4 12 12 C 1.50704 * 109.47243 * 184.78833 * 11 10 5 13 13 C 1.38297 * 119.92721 * 90.00135 * 12 11 10 14 14 C 1.38106 * 120.06880 * 180.02562 * 13 12 11 15 15 C 1.38877 * 119.92569 * 359.97223 * 14 13 12 16 16 O 1.35753 * 120.06784 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99899 * 5.31055 * 16 15 14 18 18 H 1.08003 * 119.99958 * 354.89591 * 17 16 15 19 19 C 1.38658 * 120.00260 * 174.89265 * 17 16 15 20 20 N 1.31553 * 120.00044 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00252 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46988 * 59.99583 * 21 19 17 23 23 H 1.48494 * 109.47106 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46879 * 300.00155 * 21 19 17 25 25 C 1.38881 * 119.86616 * 0.28106 * 15 14 13 26 26 C 1.38098 * 119.92766 * 359.49154 * 25 15 14 27 27 H 1.08004 * 119.99544 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00243 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99544 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46992 * 4.99752 * 3 2 1 31 31 H 1.08995 * 109.47219 * 244.99881 * 3 2 1 32 32 H 1.09004 * 109.47149 * 60.00107 * 4 3 2 33 33 H 1.09008 * 109.46948 * 300.00033 * 4 3 2 34 34 H 1.09002 * 109.47168 * 54.37414 * 7 5 4 35 35 H 1.09003 * 109.47003 * 174.37688 * 7 5 4 36 36 H 1.09001 * 109.47146 * 305.29908 * 8 7 5 37 37 H 1.09001 * 109.46625 * 65.29454 * 8 7 5 38 38 H 1.09001 * 109.47261 * 300.00222 * 9 8 7 39 39 H 1.09002 * 109.46961 * 60.00048 * 9 8 7 40 40 H 1.08992 * 109.47031 * 180.02562 * 9 8 7 41 41 H 1.00897 * 110.99975 * 27.37967 * 10 5 4 42 42 H 1.08999 * 109.47308 * 64.79073 * 11 10 5 43 43 H 1.09002 * 109.47340 * 304.79009 * 11 10 5 44 44 H 1.07998 * 119.97040 * 0.02562 * 13 12 11 45 45 H 1.07992 * 120.03551 * 179.97438 * 14 13 12 46 46 H 0.97000 * 120.00161 * 180.02562 * 20 19 17 47 47 H 1.08003 * 120.03415 * 179.72311 * 25 15 14 48 48 H 1.07997 * 119.96349 * 180.23627 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6577 1.1813 6 1 3.0926 3.4865 1.1810 7 6 4.6802 2.7388 2.4306 8 6 3.7932 2.7998 3.6758 9 6 4.6663 3.0136 4.9139 10 7 4.6452 2.7348 -0.0181 11 6 4.8485 4.1301 -0.4300 12 6 5.6182 4.1646 -1.7252 13 6 4.9409 4.1495 -2.9309 14 6 5.6433 4.1804 -4.1196 15 6 7.0312 4.2273 -4.1032 16 8 7.7246 4.2572 -5.2699 17 6 7.0059 4.3505 -6.4068 18 1 5.9271 4.3146 -6.3682 19 6 7.6516 4.4926 -7.6256 20 7 8.9655 4.5369 -7.6726 21 14 6.6558 4.6225 -9.2007 22 1 5.7645 5.8080 -9.1265 23 1 7.5758 4.7657 -10.3575 24 1 5.8354 3.3964 -9.3701 25 6 7.7086 4.2370 -2.8908 26 6 7.0003 4.2107 -1.7056 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 3.7400 0.5064 1.0921 33 1 2.4772 1.2355 2.1131 34 1 5.3195 1.8574 2.4827 35 1 5.2995 3.6345 2.3814 36 1 3.0894 3.6267 3.5804 37 1 3.2431 1.8642 3.7762 38 1 5.3701 2.1868 5.0093 39 1 5.2164 3.9492 4.8134 40 1 4.0344 3.0566 5.8010 41 1 4.2545 2.1888 -0.7712 42 1 5.4101 4.6583 0.3405 43 1 3.8810 4.6125 -0.5694 44 1 3.8616 4.1134 -2.9430 45 1 5.1139 4.1681 -5.0608 46 1 9.4173 4.6366 -8.5252 47 1 8.7880 4.2689 -2.8749 48 1 7.5263 4.2221 -0.7625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180554927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:39 Heat of formation + Delta-G solvation = -10.661489 kcal Electronic energy + Delta-G solvation = -23854.738750 eV Core-core repulsion = 20488.727426 eV Total energy + Delta-G solvation = -3366.011323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -39.15671 -38.36591 -36.62662 -35.17531 -34.07404 -32.32719 -31.36476 -30.14379 -29.01932 -27.89231 -25.56168 -24.46777 -23.42788 -22.05485 -21.88376 -20.43614 -20.20605 -19.87969 -17.96423 -17.01928 -15.96030 -15.63743 -15.59678 -14.89938 -14.73556 -14.51971 -14.37838 -13.92061 -13.82159 -13.57775 -13.49406 -13.26784 -12.81548 -12.67789 -12.55043 -12.36341 -12.19091 -12.04609 -11.65255 -11.55395 -11.45069 -11.27217 -11.10961 -10.92533 -10.86952 -10.75964 -10.64131 -10.53151 -10.41871 -10.32605 -9.52995 -9.32625 -8.82663 -8.30528 -8.14431 -7.16469 -6.44275 -4.03193 2.05243 2.24582 2.30781 3.13169 3.14068 3.17050 3.97147 4.18980 4.47242 4.62186 4.77252 4.78494 4.85015 5.00218 5.04269 5.10764 5.13828 5.21030 5.29672 5.34489 5.41698 5.45611 5.52262 5.58694 5.61949 5.67054 5.71742 5.75161 5.79152 5.82650 5.90411 5.97278 6.00399 6.04205 6.17540 6.23130 6.27756 6.40064 6.45421 6.53862 6.73260 6.92411 7.05379 7.16871 7.28996 7.39305 7.45398 7.55702 7.85279 8.00722 9.01246 9.71922 10.73731 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002699 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.941052 B =10371.882148 C =11822.275244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.101 4.101 4 C -0.119 4.119 5 C 0.085 3.915 6 H 0.042 0.958 7 C -0.107 4.107 8 C -0.126 4.126 9 C -0.152 4.152 10 N -0.682 5.682 11 C 0.119 3.881 12 C -0.186 4.186 13 C -0.066 4.066 14 C -0.235 4.235 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.195 4.195 26 C -0.051 4.051 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.342 0.658 42 H 0.069 0.931 43 H 0.026 0.974 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.270 0.730 47 H 0.116 0.884 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 -4.834 18.854 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.157 4.157 5 C -0.024 4.024 6 H 0.060 0.940 7 C -0.145 4.145 8 C -0.164 4.164 9 C -0.209 4.209 10 N -0.315 5.315 11 C -0.009 4.009 12 C -0.188 4.188 13 C -0.085 4.085 14 C -0.254 4.254 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.469 4.469 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.214 4.214 26 C -0.070 4.070 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.163 0.837 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.120 0.880 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.134 0.866 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.316 -4.847 18.956 23.120 hybrid contribution -1.440 0.237 -1.283 1.943 sum -13.756 -4.610 17.674 22.866 Atomic orbital electron populations 1.23833 0.96002 1.01692 1.02210 1.22968 0.95975 0.98574 0.98990 1.20861 0.98270 0.95373 0.99341 1.21804 0.97648 0.98021 0.98204 1.21602 0.92899 0.96388 0.91559 0.94018 1.21587 0.97856 1.02715 0.92324 1.21589 0.98399 1.01603 0.94795 1.21762 0.99887 1.01777 0.97478 1.60645 1.51685 1.11715 1.07489 1.20667 0.97150 0.88648 0.94453 1.19148 0.93757 1.12624 0.93222 1.20581 0.97961 0.98025 0.91950 1.21109 0.94111 1.11770 0.98410 1.19407 0.90562 0.92231 0.87607 1.83980 1.34502 1.78585 1.11040 1.21271 0.91329 1.52221 0.82036 0.89171 1.25283 0.96063 0.96520 0.98632 1.70027 1.07272 1.45703 1.26777 0.85792 0.78811 0.79163 0.79727 1.19523 1.20267 1.19520 1.20229 0.99531 1.11463 0.90162 1.20465 0.93066 0.97111 0.96390 0.88752 0.88656 0.87344 0.91725 0.90714 0.90883 0.91123 0.91436 0.91871 0.92390 0.92028 0.92745 0.92772 0.93074 0.83730 0.91266 0.95599 0.88031 0.85691 0.91971 0.86587 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 14.32 29.01 0.42 -1.20 16 2 C -0.15 -1.26 9.52 -36.03 -0.34 -1.60 16 3 C -0.10 -0.90 5.50 -27.88 -0.15 -1.05 16 4 C -0.12 -1.03 4.63 -26.73 -0.12 -1.16 16 5 C 0.09 0.84 2.12 -67.71 -0.14 0.70 16 6 H 0.04 0.42 7.67 -51.93 -0.40 0.03 16 7 C -0.11 -1.00 4.96 -26.73 -0.13 -1.14 16 8 C -0.13 -0.98 5.58 -26.73 -0.15 -1.13 16 9 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 10 N -0.68 -8.35 6.34 -107.99 -0.68 -9.03 16 11 C 0.12 1.60 5.68 -4.97 -0.03 1.57 16 12 C -0.19 -3.16 5.35 -104.58 -0.56 -3.71 16 13 C -0.07 -1.20 9.69 -39.61 -0.38 -1.59 16 14 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 15 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 16 O -0.18 -5.12 9.76 0.05 0.00 -5.11 16 17 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 18 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 21 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 27 H 0.09 0.72 7.84 -52.48 -0.41 0.31 16 28 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 29 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 31 H 0.07 0.73 6.45 -51.93 -0.33 0.39 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.56 6.48 -51.92 -0.34 0.22 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 6.74 -51.93 -0.35 0.10 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.34 4.29 6.38 -39.29 -0.25 4.03 16 42 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 43 H 0.03 0.33 7.88 -51.93 -0.41 -0.07 16 44 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 48 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -29.63 389.24 -9.56 -39.19 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.05 Total: 6.80 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -2.43 Total: -28.59 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.07 Total: -33.71 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.63 -9.56 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180554927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.532 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.84 seconds