Wall clock time and date at job start Tue Mar 31 2020 09:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00326 * 2 1 4 4 C 1.53002 * 109.47181 * 124.99742 * 3 2 1 5 5 C 1.52998 * 109.47112 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46998 * 55.00229 * 5 4 3 7 7 C 1.53002 * 109.47077 * 175.00033 * 5 4 3 8 8 C 1.53007 * 109.47229 * 294.37235 * 7 5 4 9 9 C 1.52997 * 109.47296 * 185.29616 * 8 7 5 10 10 N 1.46896 * 109.47126 * 294.99852 * 5 4 3 11 11 C 1.46900 * 110.99850 * 151.32708 * 10 5 4 12 12 C 1.50704 * 109.47243 * 184.78833 * 11 10 5 13 13 C 1.38297 * 119.92721 * 90.00135 * 12 11 10 14 14 C 1.38106 * 120.06880 * 180.02562 * 13 12 11 15 15 C 1.38877 * 119.92569 * 359.97223 * 14 13 12 16 16 O 1.35753 * 120.06784 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99899 * 5.31055 * 16 15 14 18 18 H 1.08003 * 119.99958 * 354.89591 * 17 16 15 19 19 C 1.38658 * 120.00260 * 174.89265 * 17 16 15 20 20 N 1.31553 * 120.00044 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00252 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46988 * 59.99583 * 21 19 17 23 23 H 1.48494 * 109.47106 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46879 * 300.00155 * 21 19 17 25 25 C 1.38881 * 119.86616 * 0.28106 * 15 14 13 26 26 C 1.38098 * 119.92766 * 359.49154 * 25 15 14 27 27 H 1.08004 * 119.99544 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00243 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99544 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46992 * 4.99752 * 3 2 1 31 31 H 1.08995 * 109.47219 * 244.99881 * 3 2 1 32 32 H 1.09004 * 109.47149 * 60.00107 * 4 3 2 33 33 H 1.09008 * 109.46948 * 300.00033 * 4 3 2 34 34 H 1.09002 * 109.47168 * 54.37414 * 7 5 4 35 35 H 1.09003 * 109.47003 * 174.37688 * 7 5 4 36 36 H 1.09001 * 109.47146 * 305.29908 * 8 7 5 37 37 H 1.09001 * 109.46625 * 65.29454 * 8 7 5 38 38 H 1.09001 * 109.47261 * 300.00222 * 9 8 7 39 39 H 1.09002 * 109.46961 * 60.00048 * 9 8 7 40 40 H 1.08992 * 109.47031 * 180.02562 * 9 8 7 41 41 H 1.00897 * 110.99975 * 27.37967 * 10 5 4 42 42 H 1.08999 * 109.47308 * 64.79073 * 11 10 5 43 43 H 1.09002 * 109.47340 * 304.79009 * 11 10 5 44 44 H 1.07998 * 119.97040 * 0.02562 * 13 12 11 45 45 H 1.07992 * 120.03551 * 179.97438 * 14 13 12 46 46 H 0.97000 * 120.00161 * 180.02562 * 20 19 17 47 47 H 1.08003 * 120.03415 * 179.72311 * 25 15 14 48 48 H 1.07997 * 119.96349 * 180.23627 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6577 1.1813 6 1 3.0926 3.4865 1.1810 7 6 4.6802 2.7388 2.4306 8 6 3.7932 2.7998 3.6758 9 6 4.6663 3.0136 4.9139 10 7 4.6452 2.7348 -0.0181 11 6 4.8485 4.1301 -0.4300 12 6 5.6182 4.1646 -1.7252 13 6 4.9409 4.1495 -2.9309 14 6 5.6433 4.1804 -4.1196 15 6 7.0312 4.2273 -4.1032 16 8 7.7246 4.2572 -5.2699 17 6 7.0059 4.3505 -6.4068 18 1 5.9271 4.3146 -6.3682 19 6 7.6516 4.4926 -7.6256 20 7 8.9655 4.5369 -7.6726 21 14 6.6558 4.6225 -9.2007 22 1 5.7645 5.8080 -9.1265 23 1 7.5758 4.7657 -10.3575 24 1 5.8354 3.3964 -9.3701 25 6 7.7086 4.2370 -2.8908 26 6 7.0003 4.2107 -1.7056 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 3.7400 0.5064 1.0921 33 1 2.4772 1.2355 2.1131 34 1 5.3195 1.8574 2.4827 35 1 5.2995 3.6345 2.3814 36 1 3.0894 3.6267 3.5804 37 1 3.2431 1.8642 3.7762 38 1 5.3701 2.1868 5.0093 39 1 5.2164 3.9492 4.8134 40 1 4.0344 3.0566 5.8010 41 1 4.2545 2.1888 -0.7712 42 1 5.4101 4.6583 0.3405 43 1 3.8810 4.6125 -0.5694 44 1 3.8616 4.1134 -2.9430 45 1 5.1139 4.1681 -5.0608 46 1 9.4173 4.6366 -8.5252 47 1 8.7880 4.2689 -2.8749 48 1 7.5263 4.2221 -0.7625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180554927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:33 Heat of formation + Delta-G solvation = -26.251051 kcal Electronic energy + Delta-G solvation = -23855.414764 eV Core-core repulsion = 20488.727426 eV Total energy + Delta-G solvation = -3366.687338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -40.80685 -39.39116 -38.19628 -35.86108 -35.04965 -34.23047 -32.37928 -31.76863 -30.19489 -28.73949 -27.44778 -25.61900 -24.35068 -23.60326 -22.66959 -21.95222 -20.96728 -20.55692 -19.83336 -18.85351 -16.96970 -16.55905 -16.47712 -16.30525 -16.22272 -15.69839 -15.52587 -15.31161 -15.24296 -14.91017 -14.42529 -14.33340 -14.17115 -13.90971 -13.68497 -13.51860 -13.21474 -13.14599 -12.90917 -12.71381 -12.44833 -12.39016 -12.30250 -12.14970 -12.09684 -11.96519 -11.64698 -11.57082 -11.50398 -11.17399 -11.12730 -10.78168 -10.17562 -9.76829 -9.27088 -8.88598 -8.46762 -6.15042 0.61444 0.68893 1.34577 1.42429 1.45397 1.51032 2.17965 2.79354 3.11934 3.45364 3.54274 3.77841 3.96165 4.06131 4.11708 4.14533 4.19438 4.24229 4.36203 4.38579 4.48906 4.49769 4.58066 4.61916 4.65491 4.78470 4.81529 4.85134 4.94561 4.97158 5.04306 5.09518 5.11144 5.13929 5.15908 5.22562 5.31985 5.34280 5.37675 5.50043 5.55927 5.60230 5.72150 5.77854 5.83203 5.90746 6.03268 6.19494 6.28899 6.55483 6.97777 7.79274 8.76398 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002699 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.941052 B =10371.882148 C =11822.275244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.098 4.098 4 C -0.111 4.111 5 C 0.089 3.911 6 H 0.047 0.953 7 C -0.103 4.103 8 C -0.122 4.122 9 C -0.152 4.152 10 N -0.690 5.690 11 C 0.124 3.876 12 C -0.159 4.159 13 C -0.062 4.062 14 C -0.243 4.243 15 C 0.114 3.886 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.206 4.206 26 C -0.047 4.047 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.341 0.659 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.137 0.863 45 H 0.118 0.882 46 H 0.273 0.727 47 H 0.111 0.889 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 -4.995 20.969 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.178 4.178 3 C -0.135 4.135 4 C -0.149 4.149 5 C -0.020 4.020 6 H 0.065 0.935 7 C -0.142 4.142 8 C -0.160 4.160 9 C -0.210 4.210 10 N -0.323 5.323 11 C -0.005 4.005 12 C -0.160 4.160 13 C -0.081 4.081 14 C -0.262 4.262 15 C 0.063 3.937 16 O -0.140 6.140 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.226 4.226 26 C -0.066 4.066 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.161 0.839 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.155 0.845 45 H 0.136 0.864 46 H 0.082 0.918 47 H 0.129 0.871 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.347 -5.016 21.139 26.599 hybrid contribution -0.632 0.247 -1.551 1.693 sum -15.979 -4.768 19.587 25.724 Atomic orbital electron populations 1.23996 0.95941 1.02398 1.01206 1.23028 0.96291 0.98602 0.99905 1.20818 0.98208 0.95661 0.98850 1.21734 0.97399 0.97050 0.98726 1.21631 0.92748 0.97176 0.90475 0.93499 1.21552 0.97850 1.01875 0.92885 1.21553 0.98200 1.02096 0.94103 1.21766 0.99955 1.01555 0.97692 1.60610 1.52835 1.10672 1.08201 1.20651 0.97474 0.89841 0.92489 1.19647 0.93551 1.08101 0.94670 1.20929 0.99677 0.96582 0.90891 1.21219 0.93228 1.12005 0.99721 1.19945 0.92048 0.94286 0.87374 1.83944 1.36068 1.81681 1.12286 1.21781 0.92064 1.52539 0.82649 0.88138 1.26599 0.97310 0.95852 1.02331 1.70179 1.09454 1.48519 1.27808 0.84655 0.77248 0.79886 0.74470 1.18152 1.19620 1.18139 1.20465 0.99744 1.11782 0.90578 1.20832 0.93836 0.95654 0.96246 0.88345 0.87750 0.87170 0.91425 0.91697 0.91545 0.90009 0.92286 0.92695 0.92018 0.91388 0.92910 0.93071 0.92182 0.83855 0.90151 0.94000 0.84548 0.86431 0.91841 0.87126 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 14.32 67.78 0.97 -1.77 16 2 C -0.16 -2.41 9.52 25.64 0.24 -2.17 16 3 C -0.10 -1.49 5.50 29.85 0.16 -1.33 16 4 C -0.11 -1.63 4.63 30.59 0.14 -1.49 16 5 C 0.09 1.47 2.12 44.92 0.10 1.57 16 6 H 0.05 0.77 7.67 -2.39 -0.02 0.75 16 7 C -0.10 -1.66 4.96 30.60 0.15 -1.51 16 8 C -0.12 -1.55 5.58 30.60 0.17 -1.38 16 9 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 10 N -0.69 -14.66 6.34 -495.57 -3.14 -17.80 16 11 C 0.12 2.84 5.68 85.56 0.49 3.33 16 12 C -0.16 -4.91 5.35 -19.83 -0.11 -5.02 16 13 C -0.06 -2.12 9.69 22.25 0.22 -1.90 16 14 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.27 9.76 -22.74 -0.22 -14.49 16 17 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 18 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 19 C -0.02 -1.35 5.49 84.84 0.47 -0.89 16 20 N -0.92 -57.21 13.67 21.61 0.30 -56.92 16 21 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.21 -9.01 9.99 22.39 0.22 -8.78 16 26 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 27 H 0.10 1.26 7.84 -2.91 -0.02 1.24 16 28 H 0.10 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.07 0.98 7.79 -2.39 -0.02 0.97 16 31 H 0.06 1.11 6.45 -2.39 -0.02 1.10 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.04 6.48 -2.38 -0.02 1.02 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.98 7.70 -2.39 -0.02 0.96 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.79 6.74 -2.39 -0.02 0.78 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.34 7.52 6.38 -89.70 -0.57 6.95 16 42 H 0.08 1.75 7.66 -2.39 -0.02 1.73 16 43 H 0.04 0.88 7.88 -2.39 -0.02 0.86 16 44 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 45 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 46 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 47 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 48 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -68.36 389.24 4.46 -63.90 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.35 Total: 32.30 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 5.15 Total: -52.17 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.85 Total: -74.72 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.22 Total: -14.49 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -68.36 4.46 -63.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180554927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.651 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds