Wall clock time and date at job start Tue Mar 31 2020 07:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47095 * 2 1 4 4 C 1.53005 * 109.46869 * 338.39925 * 3 2 1 5 5 C 1.52994 * 109.47388 * 218.39784 * 3 2 1 6 6 N 1.46499 * 109.47002 * 98.39434 * 3 2 1 7 7 C 1.46494 * 120.00232 * 242.40166 * 6 3 2 8 8 C 1.50698 * 109.47344 * 270.00479 * 7 6 3 9 9 H 1.08003 * 120.00213 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99989 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99804 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99739 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47227 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46928 * 119.99791 * 12 10 8 15 15 H 1.48499 * 109.47017 * 239.99737 * 12 10 8 16 16 C 1.34780 * 119.99578 * 62.40648 * 6 3 2 17 17 O 1.21557 * 119.99678 * 211.28903 * 16 6 3 18 18 C 1.47839 * 120.00331 * 31.29469 * 16 6 3 19 19 C 1.39583 * 120.14237 * 317.85302 * 18 16 6 20 20 C 1.37957 * 119.85271 * 180.27768 * 19 18 16 21 21 C 1.50699 * 119.92590 * 179.97438 * 20 19 18 22 22 C 1.38357 * 120.14521 * 359.97401 * 20 19 18 23 23 C 1.38354 * 120.29489 * 0.04359 * 22 20 19 24 24 C 1.50700 * 119.92968 * 179.97438 * 23 22 20 25 25 C 1.37957 * 120.14441 * 359.95816 * 23 22 20 26 26 H 1.09002 * 109.47348 * 299.99620 * 1 2 3 27 27 H 1.08997 * 109.47375 * 60.00283 * 1 2 3 28 28 H 1.09003 * 109.46804 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47348 * 240.00380 * 2 1 3 30 30 H 1.08997 * 109.47375 * 119.99717 * 2 1 3 31 31 H 1.09003 * 109.47046 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46945 * 299.99709 * 4 3 2 33 33 H 1.09000 * 109.46874 * 59.99666 * 4 3 2 34 34 H 1.09001 * 109.47548 * 253.99093 * 5 3 2 35 35 H 1.09004 * 109.47079 * 13.99304 * 5 3 2 36 36 H 1.09004 * 109.47411 * 133.98968 * 5 3 2 37 37 H 1.08999 * 109.47034 * 30.00627 * 7 6 3 38 38 H 1.09005 * 109.47141 * 150.00508 * 7 6 3 39 39 H 0.97003 * 120.00052 * 180.02562 * 11 10 8 40 40 H 1.07995 * 120.07234 * 0.24786 * 19 18 16 41 41 H 1.09002 * 109.47407 * 269.97659 * 21 20 19 42 42 H 1.09006 * 109.47189 * 29.98234 * 21 20 19 43 43 H 1.09001 * 109.47020 * 149.97734 * 21 20 19 44 44 H 1.08000 * 119.84973 * 180.02562 * 22 20 19 45 45 H 1.09000 * 109.47211 * 269.97870 * 24 23 22 46 46 H 1.08999 * 109.47060 * 29.97406 * 24 23 22 47 47 H 1.08997 * 109.47526 * 149.98035 * 24 23 22 48 48 H 1.08006 * 120.07657 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 0.9454 2.3704 -0.5311 5 6 3.2758 1.5466 -0.8959 6 7 2.3929 1.8357 1.3664 7 6 1.6784 2.9350 2.0200 8 6 2.3852 4.2346 1.7327 9 1 3.2776 4.2410 1.1245 10 6 1.8930 5.4154 2.2473 11 7 0.8066 5.4075 2.9884 12 14 2.7696 7.0262 1.8918 13 1 3.9577 6.7657 1.0400 14 1 1.8450 7.9468 1.1827 15 1 3.2024 7.6467 3.1697 16 6 3.3749 1.1860 2.0222 17 8 3.3233 1.0671 3.2308 18 6 4.5150 0.6181 1.2716 19 6 4.2973 -0.0484 0.0646 20 6 5.3649 -0.5810 -0.6280 21 6 5.1317 -1.3015 -1.9309 22 6 6.6492 -0.4552 -0.1290 23 6 6.8719 0.2040 1.0668 24 6 8.2741 0.3357 1.6030 25 6 5.8131 0.7412 1.7694 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3086 3.3982 -0.5306 32 1 0.6828 2.0779 -1.5477 33 1 0.0650 2.2962 0.1073 34 1 4.1670 1.6434 -0.2759 35 1 3.3560 0.6495 -1.5099 36 1 3.1848 2.4210 -1.5404 37 1 0.6588 2.9837 1.6378 38 1 1.6552 2.7642 3.0963 39 1 0.4602 6.2382 3.3501 40 1 3.2953 -0.1473 -0.3258 41 1 4.9647 -2.3608 -1.7356 42 1 4.2568 -0.8811 -2.4270 43 1 6.0049 -1.1836 -2.5726 44 1 7.4816 -0.8736 -0.6754 45 1 8.5007 -0.5181 2.2415 46 1 8.9794 0.3655 0.7724 47 1 8.3566 1.2550 2.1828 48 1 5.9882 1.2551 2.7031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187511794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:22 Heat of formation + Delta-G solvation = 40.325713 kcal Electronic energy + Delta-G solvation = -26798.186481 eV Core-core repulsion = 23434.386128 eV Total energy + Delta-G solvation = -3363.800352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -5.40 seconds Orbital eigenvalues (eV) -42.64154 -39.69089 -38.79539 -35.61702 -34.60020 -33.84372 -33.36347 -30.92330 -29.90733 -28.79225 -28.02391 -26.62293 -25.61561 -24.89274 -23.43971 -22.08279 -21.38124 -19.05502 -18.64990 -17.96677 -17.47518 -17.16933 -16.58694 -16.33028 -16.03037 -15.60983 -15.36432 -15.15356 -14.64858 -14.45626 -14.29664 -14.28399 -13.93806 -13.75034 -13.44426 -13.36589 -13.15611 -13.02088 -12.97126 -12.69621 -12.67397 -12.54845 -12.40863 -12.32816 -12.31680 -12.14198 -11.93574 -11.69000 -11.65382 -11.52393 -11.07724 -10.78818 -10.64447 -9.67256 -9.30692 -8.99093 -8.22716 -6.38016 0.05494 0.47174 1.33220 1.35094 1.46847 1.66762 2.23867 2.39314 2.78799 3.05337 3.55313 3.69382 3.76000 3.92701 3.96777 4.01584 4.20484 4.29809 4.41081 4.41762 4.52505 4.55675 4.67124 4.70307 4.76362 4.79894 4.83211 4.87042 4.93105 4.94265 5.00172 5.02430 5.05240 5.11740 5.17729 5.20654 5.22307 5.34449 5.37783 5.44621 5.48091 5.51864 5.59894 5.63014 5.66244 5.91374 6.07427 6.07585 6.68725 6.77231 7.17493 7.35529 8.83531 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.005897 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.939851 B = 4747.221320 C = 5861.691817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.158 3.842 4 C -0.143 4.143 5 C -0.192 4.192 6 N -0.604 5.604 7 C 0.262 3.738 8 C -0.535 4.535 9 H 0.051 0.949 10 C 0.011 3.989 11 N -0.926 5.926 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.268 1.268 15 H -0.282 1.282 16 C 0.559 3.441 17 O -0.594 6.594 18 C -0.166 4.166 19 C -0.089 4.089 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.088 4.088 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.096 4.096 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.036 0.964 38 H -0.014 1.014 39 H 0.267 0.733 40 H 0.182 0.818 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.157 0.843 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.056 0.944 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -14.266 -15.737 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.074 3.926 4 C -0.200 4.200 5 C -0.248 4.248 6 N -0.336 5.336 7 C 0.142 3.858 8 C -0.574 4.574 9 H 0.070 0.930 10 C -0.188 4.188 11 N -0.566 5.566 12 Si 0.787 3.213 13 H -0.192 1.192 14 H -0.193 1.193 15 H -0.208 1.208 16 C 0.350 3.650 17 O -0.476 6.476 18 C -0.169 4.169 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.166 4.166 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.164 4.164 25 C -0.115 4.115 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.004 0.996 39 H 0.076 0.924 40 H 0.198 0.802 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.175 0.825 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.557 -14.188 -15.024 22.367 hybrid contribution -0.003 1.592 1.260 2.030 sum 8.554 -12.596 -13.765 20.526 Atomic orbital electron populations 1.21901 0.94249 1.02353 1.02005 1.22407 0.98104 0.94361 1.02804 1.20821 0.95972 0.95169 0.80618 1.22209 0.97250 0.98944 1.01556 1.23763 0.97860 1.03357 0.99843 1.48080 1.35732 1.34096 1.15667 1.18826 0.92609 0.83268 0.91143 1.21678 1.11260 0.92413 1.32021 0.93038 1.25804 0.95728 1.02711 0.94544 1.70067 1.23129 1.28552 1.34830 0.85434 0.78774 0.79020 0.78025 1.19195 1.19275 1.20830 1.18870 0.82812 0.76951 0.86398 1.90638 1.79533 1.59554 1.17846 1.19970 0.93230 1.05290 0.98412 1.22802 1.03783 0.92620 0.91348 1.20148 0.92303 1.00424 0.99072 1.20856 1.03923 1.00084 0.91688 1.21418 0.97593 0.96973 0.94574 1.20012 0.95786 0.99353 0.96101 1.20784 0.91228 1.02414 1.01994 1.21021 0.91910 0.99593 0.98986 0.95384 0.89966 0.91023 0.86522 0.93570 0.93321 0.88183 0.92890 0.90445 0.87241 0.92266 0.94593 0.99613 0.92426 0.80201 0.89819 0.90325 0.89690 0.82537 0.90330 0.89153 0.92483 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.58 71.98 0.62 -3.04 16 2 C -0.14 -3.69 4.24 30.59 0.13 -3.56 16 3 C 0.16 5.30 0.97 3.61 0.00 5.30 16 4 C -0.14 -4.72 5.67 71.98 0.41 -4.31 16 5 C -0.19 -5.47 7.34 71.98 0.53 -4.95 16 6 N -0.60 -27.87 2.39 -782.45 -1.87 -29.74 16 7 C 0.26 14.72 4.73 85.63 0.40 15.13 16 8 C -0.54 -31.18 8.52 25.60 0.22 -30.96 16 9 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 10 C 0.01 0.65 5.46 84.66 0.46 1.12 16 11 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 12 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 16 C 0.56 27.02 5.92 86.78 0.51 27.53 16 17 O -0.59 -34.29 16.76 -3.89 -0.07 -34.35 16 18 C -0.17 -6.32 4.23 -20.09 -0.08 -6.41 16 19 C -0.09 -2.47 4.50 22.53 0.10 -2.37 16 20 C -0.12 -2.53 5.74 -19.90 -0.11 -2.64 16 21 C -0.11 -1.32 9.96 71.24 0.71 -0.61 16 22 C -0.09 -1.85 9.34 22.33 0.21 -1.64 16 23 C -0.11 -3.00 5.87 -19.90 -0.12 -3.11 16 24 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 25 C -0.10 -3.48 9.31 22.53 0.21 -3.27 16 26 H 0.03 0.87 7.50 -2.39 -0.02 0.85 16 27 H 0.08 1.69 6.45 -2.39 -0.02 1.67 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 2.05 6.44 -2.39 -0.02 2.03 16 30 H 0.05 1.46 6.61 -2.39 -0.02 1.45 16 31 H 0.05 1.93 7.09 -2.39 -0.02 1.91 16 32 H 0.10 2.36 7.50 -2.39 -0.02 2.34 16 33 H 0.05 1.91 5.09 -2.39 -0.01 1.90 16 34 H 0.08 2.65 3.91 -14.62 -0.06 2.59 16 35 H 0.11 2.16 3.94 -2.39 -0.01 2.15 16 36 H 0.06 1.66 7.65 -2.39 -0.02 1.65 16 37 H 0.04 2.02 5.78 -2.39 -0.01 2.01 16 38 H -0.01 -0.94 7.35 -2.38 -0.02 -0.96 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.18 4.44 1.15 -4.49 -0.01 4.43 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.78 6.84 -2.38 -0.02 0.76 16 43 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 44 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 47 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 48 H 0.10 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -78.62 357.88 6.20 -72.42 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.92 Total: 19.84 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.91 Total: -19.23 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -1.59 Total: -86.01 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.07 Total: -34.35 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.62 6.20 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187511794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.742 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -5.40 seconds