Wall clock time and date at job start Tue Mar 31 2020 07:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47039 * 2 1 4 4 C 1.52998 * 109.46616 * 294.60333 * 3 2 1 5 5 C 1.52995 * 109.46975 * 174.60556 * 3 2 1 6 6 N 1.46502 * 109.46960 * 54.60005 * 3 2 1 7 7 C 1.46491 * 119.99965 * 238.75674 * 6 3 2 8 8 C 1.50707 * 109.46985 * 270.00282 * 7 6 3 9 9 H 1.07990 * 120.00265 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99855 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99739 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00002 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47561 * 59.99485 * 12 10 8 14 14 H 1.48503 * 109.47493 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46979 * 299.99361 * 12 10 8 16 16 C 1.34777 * 119.99407 * 58.76232 * 6 3 2 17 17 O 1.21546 * 120.00504 * 4.97493 * 16 6 3 18 18 C 1.47856 * 119.99365 * 184.97734 * 16 6 3 19 19 C 1.39587 * 120.14352 * 303.47077 * 18 16 6 20 20 C 1.37938 * 119.85135 * 179.97438 * 19 18 16 21 21 C 1.38381 * 120.14764 * 0.25541 * 20 19 18 22 22 C 1.38343 * 120.28821 * 359.48757 * 21 20 19 23 23 C 1.50690 * 119.92693 * 180.25670 * 22 21 20 24 24 C 1.37975 * 120.14379 * 0.51081 * 22 21 20 25 25 C 1.50705 * 120.07568 * 179.76390 * 24 22 21 26 26 H 1.09002 * 109.47510 * 299.99724 * 1 2 3 27 27 H 1.09000 * 109.47273 * 60.00146 * 1 2 3 28 28 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47728 * 239.99769 * 2 1 3 30 30 H 1.09000 * 109.47273 * 119.99854 * 2 1 3 31 31 H 1.09008 * 109.46759 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47309 * 299.99847 * 4 3 2 33 33 H 1.09004 * 109.47412 * 60.00316 * 4 3 2 34 34 H 1.08999 * 109.47323 * 305.67437 * 5 3 2 35 35 H 1.08996 * 109.47363 * 65.67782 * 5 3 2 36 36 H 1.09007 * 109.46906 * 185.67775 * 5 3 2 37 37 H 1.08999 * 109.47686 * 30.00352 * 7 6 3 38 38 H 1.09003 * 109.47097 * 150.00505 * 7 6 3 39 39 H 0.97003 * 119.99611 * 180.02562 * 11 10 8 40 40 H 1.08007 * 120.07989 * 359.95696 * 19 18 16 41 41 H 1.08003 * 119.92942 * 179.97438 * 20 19 18 42 42 H 1.07996 * 119.85573 * 179.72269 * 21 20 19 43 43 H 1.09000 * 109.47282 * 270.25384 * 23 22 21 44 44 H 1.09004 * 109.47424 * 30.25451 * 23 22 21 45 45 H 1.09001 * 109.47112 * 150.25689 * 23 22 21 46 46 H 1.09001 * 109.47384 * 275.48334 * 25 24 22 47 47 H 1.08999 * 109.46487 * 35.47572 * 25 24 22 48 48 H 1.08996 * 109.47353 * 155.47404 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6437 2.1235 -1.3116 5 6 3.5639 1.4447 0.1356 6 7 1.4483 2.1696 1.1259 7 6 0.6456 3.3704 0.8817 8 6 1.5396 4.5836 0.8947 9 1 2.5997 4.4713 1.0672 10 6 1.0039 5.8369 0.6865 11 7 -0.2871 5.9736 0.4759 12 14 2.1121 7.3406 0.7019 13 1 3.1405 7.2087 -0.3612 14 1 1.2983 8.5579 0.4545 15 1 2.7786 7.4506 2.0243 16 6 1.6428 1.7337 2.3863 17 8 2.3820 0.7920 2.5965 18 6 0.9570 2.4012 3.5133 19 6 1.1201 3.7719 3.7204 20 6 0.4770 4.3886 4.7734 21 6 -0.3242 3.6504 5.6267 22 6 -0.4943 2.2926 5.4239 23 6 -1.3733 1.4977 6.3547 24 6 0.1433 1.6635 4.3744 25 6 -0.0388 0.1833 4.1581 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0066 3.1513 -1.3114 32 1 2.0838 1.5825 -2.1492 33 1 0.5579 2.1220 -1.4082 34 1 3.8510 0.8723 1.0177 35 1 4.0082 0.9928 -0.7512 36 1 3.9182 2.4706 0.2370 37 1 0.1569 3.2896 -0.0893 38 1 -0.1098 3.4673 1.6616 39 1 -0.6638 6.8553 0.3290 40 1 1.7487 4.3485 3.0578 41 1 0.6027 5.4490 4.9351 42 1 -0.8220 4.1372 6.4523 43 1 -0.7755 1.1184 7.1835 44 1 -2.1658 2.1383 6.7417 45 1 -1.8143 0.6614 5.8123 46 1 0.6638 -0.3649 4.7857 47 1 -1.0581 -0.0996 4.4212 48 1 0.1459 -0.0564 3.1109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189904891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:39 Heat of formation + Delta-G solvation = -24.305704 kcal Electronic energy + Delta-G solvation = -27062.504820 eV Core-core repulsion = 23695.901839 eV Total energy + Delta-G solvation = -3366.602981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 12.09 seconds Orbital eigenvalues (eV) -40.13394 -38.49190 -36.15011 -33.96842 -32.75044 -32.08610 -31.35654 -29.86498 -27.74271 -27.26280 -26.37027 -25.81845 -23.36142 -23.11166 -22.22910 -20.30711 -19.97321 -17.62349 -16.64579 -16.15266 -15.63508 -15.37257 -15.05910 -14.53319 -14.39273 -14.19270 -13.88557 -13.54814 -12.95952 -12.75180 -12.61043 -12.51680 -12.44641 -12.31476 -12.16579 -11.91786 -11.80128 -11.52337 -11.46950 -11.28986 -11.16383 -11.11643 -11.02740 -10.91977 -10.68660 -10.51234 -10.36448 -10.26556 -10.14659 -9.96645 -9.63824 -8.77458 -8.55938 -8.13699 -7.98249 -7.60606 -6.18589 -4.24246 1.67813 1.95126 3.21093 3.27185 3.29417 3.50272 3.90513 4.28478 4.38586 5.11597 5.16030 5.19016 5.29834 5.38722 5.43815 5.48573 5.58880 5.69057 5.73286 5.73862 5.80343 5.97537 6.01151 6.07429 6.08399 6.11745 6.19439 6.20801 6.25087 6.30994 6.34878 6.47183 6.50751 6.53717 6.62232 6.67551 6.72779 6.89264 6.95191 6.99098 7.01914 7.13723 7.15800 7.30600 7.55320 7.66720 7.77113 8.08198 8.41693 8.80536 9.08666 9.40450 10.87096 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.008114 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.259645 B = 3450.209033 C = 5343.124498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.180 3.820 4 C -0.150 4.150 5 C -0.158 4.158 6 N -0.578 5.578 7 C 0.231 3.769 8 C -0.533 4.533 9 H 0.060 0.940 10 C 0.070 3.930 11 N -0.883 5.883 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.565 3.435 17 O -0.564 6.564 18 C -0.115 4.115 19 C -0.062 4.062 20 C -0.131 4.131 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.050 4.050 25 C -0.111 4.111 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 -7.456 4.268 8.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.095 3.905 4 C -0.207 4.207 5 C -0.216 4.216 6 N -0.308 5.308 7 C 0.111 3.889 8 C -0.572 4.572 9 H 0.079 0.921 10 C -0.134 4.134 11 N -0.521 5.521 12 Si 0.715 3.285 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.353 3.647 17 O -0.445 6.445 18 C -0.118 4.118 19 C -0.080 4.080 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.112 4.112 23 C -0.165 4.165 24 C -0.051 4.051 25 C -0.167 4.167 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.175 0.825 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.904 -7.789 4.281 8.934 hybrid contribution 0.439 1.310 -0.109 1.386 sum -0.464 -6.479 4.172 7.720 Atomic orbital electron populations 1.21742 0.96080 1.00356 1.02189 1.21926 0.96042 0.96703 1.02435 1.20184 0.92794 0.90764 0.86728 1.22124 1.01862 1.02189 0.94534 1.22195 0.94995 1.02485 1.01948 1.48282 1.50510 1.27997 1.03970 1.19561 0.90777 0.80136 0.98432 1.21389 0.94681 0.91087 1.50024 0.92137 1.24897 0.94915 0.98745 0.94866 1.69916 1.10869 1.23982 1.47291 0.86716 0.80653 0.82225 0.78898 1.20136 1.21168 1.20003 1.18192 0.80976 0.82561 0.82950 1.90613 1.38903 1.30048 1.84961 1.19787 1.00547 0.94445 0.96998 1.22062 0.97419 0.92986 0.95497 1.21039 0.98496 0.99695 0.95708 1.21028 0.98849 0.93423 0.99192 1.19478 1.00357 0.94207 0.97154 1.20748 0.98160 0.99552 0.98038 1.19600 0.95952 0.95552 0.93998 1.20809 1.01107 0.91911 1.02909 0.92648 0.92774 0.93715 0.92166 0.90348 0.90162 0.93006 0.91981 0.90887 0.93186 0.92370 0.93950 0.94320 0.92501 0.82507 0.86286 0.86752 0.91778 0.92073 0.91552 0.91158 0.91900 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.45 37.16 0.35 -1.97 16 2 C -0.13 -2.19 4.65 -26.73 -0.12 -2.31 16 3 C 0.18 3.29 0.73 -131.82 -0.10 3.20 16 4 C -0.15 -2.62 6.98 37.16 0.26 -2.36 16 5 C -0.16 -2.84 8.32 37.15 0.31 -2.53 16 6 N -0.58 -11.91 1.49 -161.28 -0.24 -12.15 16 7 C 0.23 5.31 4.07 -5.20 -0.02 5.29 16 8 C -0.53 -13.05 5.84 -34.44 -0.20 -13.25 16 9 H 0.06 1.52 7.76 -52.49 -0.41 1.11 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.88 -23.45 13.29 55.43 0.74 -22.71 16 12 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.56 11.95 5.08 -12.32 -0.06 11.89 16 17 O -0.56 -12.41 12.48 5.33 0.07 -12.35 16 18 C -0.11 -2.36 4.62 -104.97 -0.49 -2.84 16 19 C -0.06 -1.27 7.80 -39.19 -0.31 -1.58 16 20 C -0.13 -2.39 10.03 -39.64 -0.40 -2.79 16 21 C -0.11 -1.72 9.69 -39.49 -0.38 -2.11 16 22 C -0.11 -1.80 5.87 -104.68 -0.61 -2.42 16 23 C -0.11 -1.32 9.60 36.00 0.35 -0.97 16 24 C -0.05 -0.91 5.91 -104.22 -0.62 -1.52 16 25 C -0.11 -1.76 8.81 36.01 0.32 -1.44 16 26 H 0.05 0.98 7.00 -51.93 -0.36 0.62 16 27 H 0.05 0.83 6.58 -51.93 -0.34 0.49 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.42 6.41 -51.93 -0.33 1.08 16 31 H 0.08 1.58 7.12 -51.92 -0.37 1.21 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.11 5.37 -51.93 -0.28 0.83 16 34 H 0.07 1.40 6.28 -51.93 -0.33 1.08 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 1.02 5.75 -51.93 -0.30 0.72 16 38 H 0.04 0.97 6.14 -51.93 -0.32 0.66 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.16 3.54 5.23 -52.48 -0.27 3.27 16 41 H 0.12 1.98 8.06 -52.48 -0.42 1.55 16 42 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 45 H 0.07 0.75 6.03 -51.93 -0.31 0.44 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.83 6.18 -51.93 -0.32 0.51 16 48 H 0.07 1.15 6.41 -51.93 -0.33 0.82 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -26.89 362.81 -8.45 -35.35 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.64 Total: 7.61 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.82 Total: -16.06 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.50 Total: -34.86 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.89 -8.45 -35.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189904891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.042 kcal (2) G-P(sol) polarization free energy of solvation -26.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.09 seconds