Wall clock time and date at job start Tue Mar 31 2020 07:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47039 * 2 1 4 4 C 1.52998 * 109.46616 * 294.60333 * 3 2 1 5 5 C 1.52995 * 109.46975 * 174.60556 * 3 2 1 6 6 N 1.46502 * 109.46960 * 54.60005 * 3 2 1 7 7 C 1.46491 * 119.99965 * 238.75674 * 6 3 2 8 8 C 1.50707 * 109.46985 * 270.00282 * 7 6 3 9 9 H 1.07990 * 120.00265 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99855 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99739 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00002 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47561 * 59.99485 * 12 10 8 14 14 H 1.48503 * 109.47493 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46979 * 299.99361 * 12 10 8 16 16 C 1.34777 * 119.99407 * 58.76232 * 6 3 2 17 17 O 1.21546 * 120.00504 * 4.97493 * 16 6 3 18 18 C 1.47856 * 119.99365 * 184.97734 * 16 6 3 19 19 C 1.39587 * 120.14352 * 303.47077 * 18 16 6 20 20 C 1.37938 * 119.85135 * 179.97438 * 19 18 16 21 21 C 1.38381 * 120.14764 * 0.25541 * 20 19 18 22 22 C 1.38343 * 120.28821 * 359.48757 * 21 20 19 23 23 C 1.50690 * 119.92693 * 180.25670 * 22 21 20 24 24 C 1.37975 * 120.14379 * 0.51081 * 22 21 20 25 25 C 1.50705 * 120.07568 * 179.76390 * 24 22 21 26 26 H 1.09002 * 109.47510 * 299.99724 * 1 2 3 27 27 H 1.09000 * 109.47273 * 60.00146 * 1 2 3 28 28 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47728 * 239.99769 * 2 1 3 30 30 H 1.09000 * 109.47273 * 119.99854 * 2 1 3 31 31 H 1.09008 * 109.46759 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47309 * 299.99847 * 4 3 2 33 33 H 1.09004 * 109.47412 * 60.00316 * 4 3 2 34 34 H 1.08999 * 109.47323 * 305.67437 * 5 3 2 35 35 H 1.08996 * 109.47363 * 65.67782 * 5 3 2 36 36 H 1.09007 * 109.46906 * 185.67775 * 5 3 2 37 37 H 1.08999 * 109.47686 * 30.00352 * 7 6 3 38 38 H 1.09003 * 109.47097 * 150.00505 * 7 6 3 39 39 H 0.97003 * 119.99611 * 180.02562 * 11 10 8 40 40 H 1.08007 * 120.07989 * 359.95696 * 19 18 16 41 41 H 1.08003 * 119.92942 * 179.97438 * 20 19 18 42 42 H 1.07996 * 119.85573 * 179.72269 * 21 20 19 43 43 H 1.09000 * 109.47282 * 270.25384 * 23 22 21 44 44 H 1.09004 * 109.47424 * 30.25451 * 23 22 21 45 45 H 1.09001 * 109.47112 * 150.25689 * 23 22 21 46 46 H 1.09001 * 109.47384 * 275.48334 * 25 24 22 47 47 H 1.08999 * 109.46487 * 35.47572 * 25 24 22 48 48 H 1.08996 * 109.47353 * 155.47404 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6437 2.1235 -1.3116 5 6 3.5639 1.4447 0.1356 6 7 1.4483 2.1696 1.1259 7 6 0.6456 3.3704 0.8817 8 6 1.5396 4.5836 0.8947 9 1 2.5997 4.4713 1.0672 10 6 1.0039 5.8369 0.6865 11 7 -0.2871 5.9736 0.4759 12 14 2.1121 7.3406 0.7019 13 1 3.1405 7.2087 -0.3612 14 1 1.2983 8.5579 0.4545 15 1 2.7786 7.4506 2.0243 16 6 1.6428 1.7337 2.3863 17 8 2.3820 0.7920 2.5965 18 6 0.9570 2.4012 3.5133 19 6 1.1201 3.7719 3.7204 20 6 0.4770 4.3886 4.7734 21 6 -0.3242 3.6504 5.6267 22 6 -0.4943 2.2926 5.4239 23 6 -1.3733 1.4977 6.3547 24 6 0.1433 1.6635 4.3744 25 6 -0.0388 0.1833 4.1581 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0066 3.1513 -1.3114 32 1 2.0838 1.5825 -2.1492 33 1 0.5579 2.1220 -1.4082 34 1 3.8510 0.8723 1.0177 35 1 4.0082 0.9928 -0.7512 36 1 3.9182 2.4706 0.2370 37 1 0.1569 3.2896 -0.0893 38 1 -0.1098 3.4673 1.6616 39 1 -0.6638 6.8553 0.3290 40 1 1.7487 4.3485 3.0578 41 1 0.6027 5.4490 4.9351 42 1 -0.8220 4.1372 6.4523 43 1 -0.7755 1.1184 7.1835 44 1 -2.1658 2.1383 6.7417 45 1 -1.8143 0.6614 5.8123 46 1 0.6638 -0.3649 4.7857 47 1 -1.0581 -0.0996 4.4212 48 1 0.1459 -0.0564 3.1109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189904891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:27 Heat of formation + Delta-G solvation = -35.430578 kcal Electronic energy + Delta-G solvation = -27062.987231 eV Core-core repulsion = 23695.901839 eV Total energy + Delta-G solvation = -3367.085392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 19.07 seconds Orbital eigenvalues (eV) -41.68391 -39.89680 -37.74228 -35.65998 -34.23000 -33.75121 -32.72581 -31.25881 -29.48454 -28.53626 -27.96651 -27.11147 -24.84309 -24.78922 -23.77089 -21.68558 -21.42731 -19.21199 -18.55948 -17.77430 -17.14721 -16.83207 -16.56100 -16.29122 -15.86588 -15.61567 -15.17555 -14.93346 -14.41582 -14.31190 -14.17502 -13.95283 -13.85212 -13.58986 -13.51899 -13.40324 -13.28804 -12.93895 -12.81772 -12.79120 -12.72528 -12.61957 -12.52971 -12.34261 -12.19764 -12.17864 -11.99943 -11.72283 -11.65920 -11.53157 -11.35949 -10.56878 -10.33935 -9.57970 -9.35906 -9.30613 -8.15169 -6.25763 0.24490 0.55258 1.39724 1.41862 1.47958 1.89296 2.30587 2.45514 2.91925 3.14087 3.68425 3.96098 3.97246 4.04321 4.08032 4.19979 4.23661 4.32774 4.42169 4.55289 4.63263 4.68859 4.70189 4.78647 4.81132 4.82287 4.85492 4.94167 4.95891 5.00584 5.03734 5.04922 5.05948 5.17166 5.19149 5.23911 5.28271 5.36873 5.42272 5.48437 5.57342 5.63064 5.68982 5.72503 5.74316 6.03236 6.13878 6.17309 6.63421 6.89477 7.36233 7.48208 8.89518 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.008114 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.259645 B = 3450.209033 C = 5343.124498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.167 3.833 4 C -0.141 4.141 5 C -0.150 4.150 6 N -0.578 5.578 7 C 0.254 3.746 8 C -0.526 4.526 9 H 0.047 0.953 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.940 3.060 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.563 3.437 17 O -0.578 6.578 18 C -0.144 4.144 19 C -0.088 4.088 20 C -0.143 4.143 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.106 4.106 24 C -0.064 4.064 25 C -0.104 4.104 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.030 0.970 38 H 0.015 0.985 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 -8.495 5.091 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.083 3.917 4 C -0.198 4.198 5 C -0.208 4.208 6 N -0.307 5.307 7 C 0.134 3.866 8 C -0.565 4.565 9 H 0.066 0.934 10 C -0.169 4.169 11 N -0.551 5.551 12 Si 0.766 3.234 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.198 1.198 16 C 0.352 3.648 17 O -0.461 6.461 18 C -0.146 4.146 19 C -0.107 4.107 20 C -0.161 4.161 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.162 4.162 24 C -0.065 4.065 25 C -0.161 4.161 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.110 0.890 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.626 -8.837 5.099 10.331 hybrid contribution 0.670 1.586 -0.312 1.749 sum -0.956 -7.251 4.786 8.741 Atomic orbital electron populations 1.21691 0.95602 1.01514 1.01033 1.21855 0.96387 0.95072 1.02962 1.20517 0.93000 0.91920 0.86238 1.22033 1.01549 1.00919 0.95309 1.22113 0.94896 1.01099 1.02703 1.48259 1.50265 1.27436 1.04781 1.19090 0.90173 0.80776 0.96602 1.21413 0.94055 0.91879 1.49109 0.93445 1.25454 0.95858 1.00890 0.94716 1.70004 1.12108 1.24413 1.48579 0.85888 0.79179 0.79527 0.78828 1.19956 1.20811 1.19754 1.18396 0.80752 0.82367 0.83293 1.90583 1.39541 1.30726 1.85205 1.19929 1.02159 0.94726 0.97831 1.21841 0.98787 0.93275 0.96752 1.21240 0.98768 1.00470 0.95585 1.21433 0.97655 0.93581 0.99249 1.20002 0.99534 0.94591 0.96672 1.20838 0.98107 0.99669 0.97625 1.19973 0.95649 0.96679 0.94187 1.20794 1.02992 0.90539 1.01740 0.95260 0.92418 0.91373 0.89259 0.92018 0.92921 0.89633 0.92585 0.92475 0.90014 0.94475 0.95193 0.96729 0.92535 0.85470 0.85328 0.83080 0.90005 0.90072 0.90594 0.90540 0.89011 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.45 71.98 0.68 -3.67 16 2 C -0.12 -3.99 4.65 30.59 0.14 -3.84 16 3 C 0.17 6.15 0.73 3.60 0.00 6.15 16 4 C -0.14 -4.89 6.98 71.98 0.50 -4.39 16 5 C -0.15 -5.40 8.32 71.98 0.60 -4.80 16 6 N -0.58 -24.79 1.49 -782.44 -1.17 -25.96 16 7 C 0.25 12.29 4.07 85.64 0.35 12.64 16 8 C -0.53 -26.89 5.84 25.60 0.15 -26.74 16 9 H 0.05 2.51 7.76 -2.92 -0.02 2.49 16 10 C 0.03 1.65 5.46 84.66 0.46 2.11 16 11 N -0.91 -49.68 13.29 21.45 0.28 -49.40 16 12 Si 0.94 41.58 29.54 68.60 2.03 43.60 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 C 0.56 24.79 5.08 86.79 0.44 25.23 16 17 O -0.58 -26.26 12.48 -3.86 -0.05 -26.31 16 18 C -0.14 -6.10 4.62 -20.09 -0.09 -6.19 16 19 C -0.09 -3.82 7.80 22.52 0.18 -3.64 16 20 C -0.14 -5.23 10.03 22.23 0.22 -5.01 16 21 C -0.10 -3.08 9.69 22.33 0.22 -2.87 16 22 C -0.11 -3.25 5.87 -19.90 -0.12 -3.37 16 23 C -0.11 -2.17 9.60 71.23 0.68 -1.48 16 24 C -0.06 -2.29 5.91 -19.61 -0.12 -2.41 16 25 C -0.10 -3.20 8.81 71.24 0.63 -2.57 16 26 H 0.03 1.04 7.00 -2.39 -0.02 1.02 16 27 H 0.06 1.72 6.58 -2.39 -0.02 1.70 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.21 6.41 -2.39 -0.02 2.19 16 31 H 0.05 2.11 7.12 -2.38 -0.02 2.09 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.00 5.37 -2.39 -0.01 1.98 16 34 H 0.06 2.23 6.28 -2.39 -0.01 2.21 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.03 1.52 5.75 -2.39 -0.01 1.50 16 38 H 0.01 0.78 6.14 -2.39 -0.01 0.77 16 39 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 40 H 0.13 6.16 5.23 -2.91 -0.02 6.14 16 41 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 45 H 0.08 1.42 6.03 -2.39 -0.01 1.41 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.09 2.22 6.18 -2.39 -0.01 2.20 16 48 H 0.04 1.58 6.41 -2.39 -0.02 1.57 16 Total: -1.00 -60.71 362.81 6.97 -53.74 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.94 Total: 29.19 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.93 Total: -24.86 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -0.88 Total: -75.36 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -60.71 6.97 -53.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189904891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.308 kcal (2) G-P(sol) polarization free energy of solvation -60.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.07 seconds