Wall clock time and date at job start Tue Mar 31 2020 08:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.53003 * 109.47225 * 120.00183 * 2 1 3 5 5 H 1.08998 * 109.47048 * 54.74462 * 4 2 1 6 6 C 1.52998 * 109.47006 * 294.74537 * 4 2 1 7 7 C 1.52998 * 109.47472 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47200 * 59.99804 * 7 6 4 9 9 C 1.53008 * 109.47064 * 300.00458 * 8 7 6 10 10 C 1.52995 * 109.47138 * 59.99714 * 9 8 7 11 11 H 1.09006 * 109.47097 * 60.00144 * 10 9 8 12 12 N 1.46503 * 109.47092 * 179.97438 * 10 9 8 13 13 C 1.39784 * 120.00065 * 279.34318 * 12 10 9 14 14 C 1.38948 * 120.00290 * 359.71995 * 13 12 10 15 15 C 1.38016 * 119.98992 * 179.77113 * 14 13 12 16 16 C 1.38898 * 120.00601 * 0.50768 * 15 14 13 17 17 O 1.35794 * 119.99444 * 179.77006 * 16 15 14 18 18 C 1.34810 * 116.99890 * 185.69871 * 17 16 15 19 19 H 1.08000 * 120.00135 * 354.91986 * 18 17 16 20 20 C 1.38627 * 119.99810 * 174.92432 * 18 17 16 21 21 N 1.31577 * 120.00383 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47460 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47151 * 119.99772 * 22 20 18 25 25 H 1.48506 * 109.47287 * 239.99616 * 22 20 18 26 26 C 1.38898 * 120.00928 * 359.74561 * 16 15 14 27 27 C 1.38010 * 120.01193 * 0.02562 * 26 16 15 28 28 H 1.09006 * 109.46851 * 305.12413 * 1 2 3 29 29 H 1.08997 * 109.47118 * 65.12477 * 1 2 3 30 30 H 1.09004 * 109.47253 * 185.13110 * 1 2 3 31 31 H 1.09003 * 109.47015 * 239.99939 * 2 1 3 32 32 H 1.09006 * 109.46942 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46975 * 299.99942 * 3 2 1 34 34 H 1.08993 * 109.47204 * 60.00030 * 3 2 1 35 35 H 1.09006 * 109.47018 * 300.00119 * 6 4 2 36 36 H 1.09004 * 109.47131 * 60.00159 * 6 4 2 37 37 H 1.08997 * 109.47761 * 180.02562 * 7 6 4 38 38 H 1.09006 * 109.46926 * 299.99967 * 7 6 4 39 39 H 1.08998 * 109.47192 * 60.00494 * 8 7 6 40 40 H 1.09000 * 109.47408 * 180.02562 * 8 7 6 41 41 H 1.09001 * 109.46653 * 180.02562 * 9 8 7 42 42 H 1.09006 * 109.47009 * 299.99804 * 9 8 7 43 43 H 0.97003 * 119.99773 * 99.34045 * 12 10 9 44 44 H 1.08002 * 120.00767 * 0.02684 * 14 13 12 45 45 H 1.08003 * 119.99848 * 180.23608 * 15 14 13 46 46 H 0.97001 * 120.00391 * 180.02562 * 21 20 18 47 47 H 1.08005 * 119.99379 * 179.97438 * 26 16 15 48 48 H 1.07993 * 120.00638 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6019 -1.7182 1.2975 6 6 1.6407 0.0721 2.4950 7 6 2.1513 -0.6487 3.7442 8 6 3.6755 -0.7636 3.6796 9 6 4.0748 -1.5571 2.4338 10 6 3.5643 -0.8362 1.1846 11 1 4.0021 0.1609 1.1361 12 7 3.9471 -1.5957 -0.0083 13 6 5.2398 -1.4776 -0.5269 14 6 6.1600 -0.6356 0.0855 15 6 7.4377 -0.5229 -0.4240 16 6 7.8005 -1.2430 -1.5550 17 8 9.0563 -1.1283 -2.0588 18 6 9.3088 -1.7600 -3.2227 19 1 8.5549 -2.3916 -3.6690 20 6 10.5363 -1.5991 -3.8466 21 7 11.4547 -0.8294 -3.3031 22 14 10.8864 -2.4750 -5.4589 23 1 9.6995 -3.2743 -5.8559 24 1 11.1833 -1.4719 -6.5129 25 1 12.0550 -3.3756 -5.2894 26 6 6.8792 -2.0807 -2.1703 27 6 5.6029 -2.1975 -1.6586 28 1 -0.3633 0.5913 0.8406 29 1 -0.3633 0.4323 -0.9323 30 1 -0.3634 -1.0236 0.0919 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.0789 1.0691 2.4466 36 1 0.5548 0.1543 2.5408 37 1 1.8665 -0.0837 4.6317 38 1 1.7135 -1.6458 3.7927 39 1 4.1133 0.2334 3.6311 40 1 4.0392 -1.2776 4.5694 41 1 5.1608 -1.6393 2.3881 42 1 3.6370 -2.5542 2.4823 43 1 3.3036 -2.1804 -0.4381 44 1 5.8767 -0.0725 0.9625 45 1 8.1541 0.1287 0.0541 46 1 12.3134 -0.7165 -3.7398 47 1 7.1615 -2.6402 -3.0500 48 1 4.8865 -2.8486 -2.1373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214442201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:20 Heat of formation + Delta-G solvation = -27.745187 kcal Electronic energy + Delta-G solvation = -25136.894400 eV Core-core repulsion = 21770.142271 eV Total energy + Delta-G solvation = -3366.752128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.03305 -38.71284 -36.69577 -35.08631 -33.86310 -32.02733 -30.35001 -29.68266 -29.17734 -27.35348 -26.66624 -25.00513 -23.72953 -22.54847 -21.68201 -20.52472 -20.41142 -19.06313 -17.74949 -17.04507 -16.38139 -15.74426 -15.19138 -14.81737 -14.52228 -14.40510 -14.29486 -13.90226 -13.60765 -13.42757 -13.39142 -12.93266 -12.73868 -12.65130 -12.54645 -12.37980 -12.14124 -11.77224 -11.59477 -11.54201 -11.44866 -11.32295 -11.12984 -10.98218 -10.89253 -10.87677 -10.54222 -10.40670 -10.32938 -10.17682 -10.01944 -9.18098 -9.09865 -8.39050 -8.11889 -6.33314 -6.28967 -3.86332 2.25014 2.62980 3.19844 3.21134 3.26297 3.84845 4.08550 4.45236 4.53281 4.66334 4.73637 4.87353 4.98675 5.01812 5.19153 5.23124 5.26968 5.31774 5.36072 5.43724 5.48414 5.50698 5.55073 5.59477 5.70228 5.74130 5.76134 5.82322 5.84522 5.92144 5.94048 5.99289 6.03316 6.13839 6.21797 6.22731 6.26166 6.29985 6.32277 6.43844 6.61775 6.91417 6.97519 7.19286 7.36660 7.50482 7.70063 8.05947 8.15406 8.32396 9.16808 9.92272 10.89568 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.002953 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.048836 B = 9479.411115 C = 9993.778481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.086 4.086 5 H 0.070 0.930 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.137 4.137 10 C 0.166 3.834 11 H 0.074 0.926 12 N -0.753 5.753 13 C 0.130 3.870 14 C -0.147 4.147 15 C -0.150 4.150 16 C 0.112 3.888 17 O -0.190 6.190 18 C -0.385 4.385 19 H 0.088 0.912 20 C 0.035 3.965 21 N -0.870 5.870 22 Si 0.937 3.063 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.278 1.278 26 C -0.189 4.189 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.388 0.612 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.266 0.734 47 H 0.126 0.874 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 0.874 10.617 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.105 4.105 5 H 0.088 0.912 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.177 4.177 10 C 0.060 3.940 11 H 0.091 0.909 12 N -0.387 5.387 13 C 0.032 3.968 14 C -0.169 4.169 15 C -0.170 4.170 16 C 0.060 3.940 17 O -0.095 6.095 18 C -0.462 4.462 19 H 0.105 0.895 20 C -0.167 4.167 21 N -0.507 5.507 22 Si 0.762 3.238 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.209 4.209 27 C -0.167 4.167 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.221 0.779 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.076 0.924 47 H 0.144 0.856 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.727 1.184 10.771 23.388 hybrid contribution -0.063 -0.789 -1.032 1.301 sum -20.790 0.395 9.738 22.961 Atomic orbital electron populations 1.21887 0.95677 1.01407 1.01504 1.21096 0.95005 0.96671 0.98141 1.21926 1.01698 0.95799 1.01299 1.21398 0.94952 0.99331 0.94790 0.91201 1.21650 1.00604 0.99373 0.93543 1.21561 0.96026 1.00550 0.97636 1.21515 0.95600 1.00606 0.97905 1.22092 1.01866 0.99298 0.94402 1.20722 0.93223 0.95276 0.84756 0.90860 1.44294 1.10914 1.52247 1.31225 1.17372 0.85413 0.98935 0.95079 1.20196 0.93044 1.02106 1.01536 1.20030 0.96176 1.03053 0.97766 1.19227 0.86152 0.94835 0.93810 1.83984 1.22598 1.66194 1.36753 1.21276 1.00787 1.26610 0.97529 0.89456 1.25206 0.94991 0.97332 0.99210 1.70057 1.05495 1.36379 1.38727 0.85710 0.78724 0.78772 0.80562 1.19283 1.20337 1.20350 1.20982 0.93603 1.03335 1.03008 1.20222 0.96605 1.02650 0.97196 0.92701 0.92959 0.92983 0.90716 0.92121 0.93096 0.92631 0.91369 0.91741 0.92235 0.92219 0.91972 0.92137 0.91247 0.92171 0.77853 0.87158 0.86678 0.92404 0.85642 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.82 37.16 0.33 -0.81 16 2 C -0.09 -0.82 2.61 -90.62 -0.24 -1.06 16 3 C -0.15 -1.43 8.46 37.16 0.31 -1.12 16 4 C -0.09 -0.76 1.52 -90.62 -0.14 -0.90 16 5 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 6 C -0.11 -0.89 4.47 -26.73 -0.12 -1.01 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 9 C -0.14 -1.50 5.28 -26.73 -0.14 -1.64 16 10 C 0.17 1.83 1.35 -67.93 -0.09 1.74 16 11 H 0.07 0.90 5.16 -51.93 -0.27 0.63 16 12 N -0.75 -9.80 4.59 -52.12 -0.24 -10.04 16 13 C 0.13 2.22 6.59 -83.71 -0.55 1.66 16 14 C -0.15 -2.66 8.56 -39.40 -0.34 -3.00 16 15 C -0.15 -3.25 9.98 -39.42 -0.39 -3.64 16 16 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 17 O -0.19 -5.59 9.76 -0.03 0.00 -5.59 16 18 C -0.39 -11.08 9.48 30.88 0.29 -10.79 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 21 N -0.87 -26.28 13.67 55.48 0.76 -25.52 16 22 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.19 -4.20 9.16 -39.42 -0.36 -4.57 16 27 C -0.14 -2.68 9.89 -39.40 -0.39 -3.07 16 28 H 0.05 0.39 6.83 -51.93 -0.35 0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.78 7.19 -51.93 -0.37 0.41 16 32 H 0.06 0.68 6.57 -51.93 -0.34 0.33 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.47 6.34 -51.93 -0.33 0.14 16 35 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 36 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.90 7.15 -51.93 -0.37 0.53 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.39 4.56 8.20 -40.82 -0.33 4.23 16 44 H 0.11 1.74 5.89 -52.49 -0.31 1.43 16 45 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 48 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -30.67 363.97 -9.23 -39.90 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.71 Total: 6.70 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -2.50 Total: -27.08 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.52 Total: -35.56 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.67 -9.23 -39.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214442201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.150 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds