Wall clock time and date at job start Tue Mar 31 2020 08:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.53003 * 109.47225 * 120.00183 * 2 1 3 5 5 H 1.08998 * 109.47048 * 54.74462 * 4 2 1 6 6 C 1.52998 * 109.47006 * 294.74537 * 4 2 1 7 7 C 1.52998 * 109.47472 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47200 * 59.99804 * 7 6 4 9 9 C 1.53008 * 109.47064 * 300.00458 * 8 7 6 10 10 C 1.52995 * 109.47138 * 59.99714 * 9 8 7 11 11 H 1.09006 * 109.47097 * 60.00144 * 10 9 8 12 12 N 1.46503 * 109.47092 * 179.97438 * 10 9 8 13 13 C 1.39784 * 120.00065 * 279.34318 * 12 10 9 14 14 C 1.38948 * 120.00290 * 359.71995 * 13 12 10 15 15 C 1.38016 * 119.98992 * 179.77113 * 14 13 12 16 16 C 1.38898 * 120.00601 * 0.50768 * 15 14 13 17 17 O 1.35794 * 119.99444 * 179.77006 * 16 15 14 18 18 C 1.34810 * 116.99890 * 185.69871 * 17 16 15 19 19 H 1.08000 * 120.00135 * 354.91986 * 18 17 16 20 20 C 1.38627 * 119.99810 * 174.92432 * 18 17 16 21 21 N 1.31577 * 120.00383 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47460 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47151 * 119.99772 * 22 20 18 25 25 H 1.48506 * 109.47287 * 239.99616 * 22 20 18 26 26 C 1.38898 * 120.00928 * 359.74561 * 16 15 14 27 27 C 1.38010 * 120.01193 * 0.02562 * 26 16 15 28 28 H 1.09006 * 109.46851 * 305.12413 * 1 2 3 29 29 H 1.08997 * 109.47118 * 65.12477 * 1 2 3 30 30 H 1.09004 * 109.47253 * 185.13110 * 1 2 3 31 31 H 1.09003 * 109.47015 * 239.99939 * 2 1 3 32 32 H 1.09006 * 109.46942 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46975 * 299.99942 * 3 2 1 34 34 H 1.08993 * 109.47204 * 60.00030 * 3 2 1 35 35 H 1.09006 * 109.47018 * 300.00119 * 6 4 2 36 36 H 1.09004 * 109.47131 * 60.00159 * 6 4 2 37 37 H 1.08997 * 109.47761 * 180.02562 * 7 6 4 38 38 H 1.09006 * 109.46926 * 299.99967 * 7 6 4 39 39 H 1.08998 * 109.47192 * 60.00494 * 8 7 6 40 40 H 1.09000 * 109.47408 * 180.02562 * 8 7 6 41 41 H 1.09001 * 109.46653 * 180.02562 * 9 8 7 42 42 H 1.09006 * 109.47009 * 299.99804 * 9 8 7 43 43 H 0.97003 * 119.99773 * 99.34045 * 12 10 9 44 44 H 1.08002 * 120.00767 * 0.02684 * 14 13 12 45 45 H 1.08003 * 119.99848 * 180.23608 * 15 14 13 46 46 H 0.97001 * 120.00391 * 180.02562 * 21 20 18 47 47 H 1.08005 * 119.99379 * 179.97438 * 26 16 15 48 48 H 1.07993 * 120.00638 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6019 -1.7182 1.2975 6 6 1.6407 0.0721 2.4950 7 6 2.1513 -0.6487 3.7442 8 6 3.6755 -0.7636 3.6796 9 6 4.0748 -1.5571 2.4338 10 6 3.5643 -0.8362 1.1846 11 1 4.0021 0.1609 1.1361 12 7 3.9471 -1.5957 -0.0083 13 6 5.2398 -1.4776 -0.5269 14 6 6.1600 -0.6356 0.0855 15 6 7.4377 -0.5229 -0.4240 16 6 7.8005 -1.2430 -1.5550 17 8 9.0563 -1.1283 -2.0588 18 6 9.3088 -1.7600 -3.2227 19 1 8.5549 -2.3916 -3.6690 20 6 10.5363 -1.5991 -3.8466 21 7 11.4547 -0.8294 -3.3031 22 14 10.8864 -2.4750 -5.4589 23 1 9.6995 -3.2743 -5.8559 24 1 11.1833 -1.4719 -6.5129 25 1 12.0550 -3.3756 -5.2894 26 6 6.8792 -2.0807 -2.1703 27 6 5.6029 -2.1975 -1.6586 28 1 -0.3633 0.5913 0.8406 29 1 -0.3633 0.4323 -0.9323 30 1 -0.3634 -1.0236 0.0919 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.0789 1.0691 2.4466 36 1 0.5548 0.1543 2.5408 37 1 1.8665 -0.0837 4.6317 38 1 1.7135 -1.6458 3.7927 39 1 4.1133 0.2334 3.6311 40 1 4.0392 -1.2776 4.5694 41 1 5.1608 -1.6393 2.3881 42 1 3.6370 -2.5542 2.4823 43 1 3.3036 -2.1804 -0.4381 44 1 5.8767 -0.0725 0.9625 45 1 8.1541 0.1287 0.0541 46 1 12.3134 -0.7165 -3.7398 47 1 7.1615 -2.6402 -3.0500 48 1 4.8865 -2.8486 -2.1373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214442201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:12 Heat of formation + Delta-G solvation = -44.231784 kcal Electronic energy + Delta-G solvation = -25137.609312 eV Core-core repulsion = 21770.142271 eV Total energy + Delta-G solvation = -3367.467041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 5.37 seconds Orbital eigenvalues (eV) -41.09331 -40.27755 -38.32882 -35.84200 -35.19958 -34.03509 -31.88681 -30.69755 -30.18006 -28.22322 -28.00483 -26.90870 -24.55387 -23.82060 -23.02868 -21.97620 -21.21137 -19.99683 -19.48912 -18.84016 -17.72036 -16.97872 -16.31282 -16.10872 -15.68621 -15.52705 -15.38998 -15.31910 -15.18530 -14.79213 -14.32276 -14.19313 -14.05831 -13.77844 -13.69955 -13.49784 -13.39455 -13.04752 -12.87905 -12.82872 -12.64641 -12.39020 -12.25557 -12.15187 -12.08052 -11.90794 -11.70276 -11.57807 -11.21993 -11.11169 -10.99588 -10.85105 -10.75840 -10.09286 -9.75790 -8.38990 -7.88540 -6.02320 0.59870 0.95803 1.36397 1.45465 1.54639 2.22661 2.67970 2.92384 3.26638 3.67646 3.69537 3.80414 3.92793 4.14239 4.17419 4.18904 4.26659 4.31146 4.47198 4.48866 4.51850 4.57800 4.63927 4.68270 4.71131 4.81938 4.86613 4.91907 4.99136 5.03361 5.07768 5.13877 5.15230 5.21700 5.25107 5.27391 5.31279 5.32072 5.40501 5.46221 5.49275 5.51911 5.57087 5.61423 5.66829 5.80236 6.02272 6.12403 6.67710 7.06197 7.10409 7.94680 8.85920 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.002953 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.048836 B = 9479.411115 C = 9993.778481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.077 4.077 5 H 0.078 0.922 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.134 4.134 10 C 0.163 3.837 11 H 0.065 0.935 12 N -0.737 5.737 13 C 0.161 3.839 14 C -0.145 4.145 15 C -0.156 4.156 16 C 0.061 3.939 17 O -0.244 6.244 18 C -0.405 4.405 19 H 0.098 0.902 20 C -0.029 4.029 21 N -0.927 5.927 22 Si 1.017 2.983 23 H -0.252 1.252 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.192 4.192 27 C -0.148 4.148 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.400 0.600 44 H 0.136 0.864 45 H 0.110 0.890 46 H 0.269 0.731 47 H 0.117 0.883 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.968 0.038 11.305 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.096 4.096 5 H 0.096 0.904 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.174 4.174 10 C 0.058 3.942 11 H 0.083 0.917 12 N -0.370 5.370 13 C 0.060 3.940 14 C -0.167 4.167 15 C -0.176 4.176 16 C 0.012 3.988 17 O -0.152 6.152 18 C -0.481 4.481 19 H 0.115 0.885 20 C -0.225 4.225 21 N -0.567 5.567 22 Si 0.837 3.163 23 H -0.175 1.175 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.212 4.212 27 C -0.170 4.170 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.236 0.764 44 H 0.154 0.846 45 H 0.128 0.872 46 H 0.078 0.922 47 H 0.135 0.865 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.604 0.338 11.504 27.163 hybrid contribution 0.785 -0.490 -1.008 1.368 sum -23.819 -0.151 10.496 26.030 Atomic orbital electron populations 1.21847 0.94246 1.02068 1.01926 1.21070 0.96173 0.96006 0.97522 1.21924 1.00362 0.96483 1.01924 1.21338 0.92726 1.00038 0.95459 0.90412 1.21649 1.01561 0.98958 0.92741 1.21542 0.94662 1.01061 0.98138 1.21507 0.96876 1.00140 0.96950 1.22033 1.00326 0.99792 0.95200 1.20908 0.95157 0.94395 0.83771 0.91749 1.44404 1.09295 1.51843 1.31453 1.17473 0.86620 0.96335 0.93573 1.20396 0.91766 1.02385 1.02167 1.20218 0.97588 1.02666 0.97081 1.19700 0.85889 0.97554 0.95704 1.83931 1.25286 1.68229 1.37761 1.21788 1.01525 1.26885 0.97929 0.88505 1.26525 0.94402 0.98216 1.03377 1.70211 1.06303 1.39063 1.41168 0.84553 0.79070 0.77646 0.75074 1.17540 1.19497 1.19486 1.21038 0.94684 1.02729 1.02738 1.20480 0.95728 1.03196 0.97609 0.91737 0.93068 0.92292 0.92127 0.94099 0.93292 0.91301 0.91558 0.90192 0.90959 0.91760 0.92157 0.91684 0.93561 0.91914 0.76438 0.84585 0.87210 0.92176 0.86504 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.82 71.98 0.64 -1.08 16 2 C -0.09 -1.35 2.61 -10.79 -0.03 -1.38 16 3 C -0.15 -2.52 8.46 71.98 0.61 -1.91 16 4 C -0.08 -1.10 1.52 -10.79 -0.02 -1.11 16 5 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 6 C -0.11 -1.31 4.47 30.59 0.14 -1.18 16 7 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 8 C -0.12 -1.79 5.92 30.60 0.18 -1.61 16 9 C -0.13 -2.62 5.28 30.60 0.16 -2.45 16 10 C 0.16 3.16 1.35 44.99 0.06 3.22 16 11 H 0.06 1.43 5.16 -2.38 -0.01 1.42 16 12 N -0.74 -17.12 4.59 -318.80 -1.46 -18.58 16 13 C 0.16 5.20 6.59 38.21 0.25 5.45 16 14 C -0.14 -5.16 8.56 22.39 0.19 -4.97 16 15 C -0.16 -6.98 9.98 22.38 0.22 -6.75 16 16 C 0.06 3.17 6.65 22.59 0.15 3.32 16 17 O -0.24 -15.31 9.76 -23.02 -0.22 -15.54 16 18 C -0.40 -24.49 9.48 67.91 0.64 -23.85 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 20 C -0.03 -1.73 5.49 84.82 0.47 -1.26 16 21 N -0.93 -59.00 13.67 21.61 0.30 -58.71 16 22 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C -0.19 -8.70 9.16 22.37 0.20 -8.49 16 27 C -0.15 -5.27 9.89 22.39 0.22 -5.05 16 28 H 0.06 0.66 6.83 -2.38 -0.02 0.64 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 1.09 7.19 -2.39 -0.02 1.08 16 32 H 0.04 0.84 6.57 -2.38 -0.02 0.83 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.97 6.34 -2.39 -0.02 0.95 16 35 H 0.07 0.84 6.34 -2.38 -0.02 0.82 16 36 H 0.08 0.76 6.69 -2.38 -0.02 0.75 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.12 7.15 -2.39 -0.02 1.10 16 42 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.40 7.94 8.20 -92.71 -0.76 7.18 16 44 H 0.14 4.11 5.89 -2.91 -0.02 4.10 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 47 H 0.12 5.39 5.63 -2.91 -0.02 5.37 16 48 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -71.51 363.97 5.10 -66.40 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.19 Total: 30.15 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 4.27 Total: -50.29 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -1.17 Total: -77.29 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.22 Total: -15.54 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.51 5.10 -66.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214442201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.170 kcal (2) G-P(sol) polarization free energy of solvation -71.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.37 seconds