Wall clock time and date at job start Tue Mar 31 2020 08:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 C 1.52998 * 109.46858 * 119.99588 * 2 1 3 5 5 H 1.09001 * 109.47744 * 300.00453 * 4 2 1 6 6 C 1.53005 * 109.46967 * 60.00377 * 4 2 1 7 7 C 1.52998 * 109.47159 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47097 * 300.00199 * 7 6 4 9 9 C 1.52997 * 109.47698 * 59.99977 * 8 7 6 10 10 H 1.08999 * 109.47451 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.46989 * 59.99791 * 9 8 7 12 12 C 1.39667 * 120.00145 * 85.00250 * 11 9 8 13 13 C 1.39009 * 120.03913 * 0.02562 * 12 11 9 14 14 C 1.38152 * 120.06597 * 180.02562 * 13 12 11 15 15 C 1.38169 * 120.14070 * 0.02562 * 14 13 12 16 16 C 1.38918 * 120.07853 * 0.02562 * 15 14 13 17 17 O 1.35755 * 120.03469 * 179.97438 * 16 15 14 18 18 C 1.34827 * 117.00625 * 174.48229 * 17 16 15 19 19 H 1.08001 * 119.99550 * 5.07968 * 18 17 16 20 20 C 1.38644 * 120.00174 * 185.08002 * 18 17 16 21 21 N 1.31559 * 120.00079 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99943 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47037 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46911 * 120.00013 * 22 20 18 25 25 H 1.48496 * 109.47269 * 239.99804 * 22 20 18 26 26 C 1.38747 * 120.04673 * 179.72563 * 12 11 9 27 27 C 1.52998 * 109.46865 * 300.00165 * 9 8 7 28 28 H 1.09000 * 109.46620 * 59.99653 * 1 2 3 29 29 H 1.08997 * 109.47094 * 300.00422 * 1 2 3 30 30 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47554 * 239.99849 * 2 1 3 32 32 H 1.09001 * 109.46826 * 60.00007 * 3 2 1 33 33 H 1.08999 * 109.47032 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47254 * 299.99967 * 3 2 1 35 35 H 1.08999 * 109.47032 * 299.99805 * 6 4 2 36 36 H 1.09001 * 109.46826 * 59.99515 * 6 4 2 37 37 H 1.09001 * 109.47378 * 59.99631 * 7 6 4 38 38 H 1.08999 * 109.47292 * 180.02562 * 7 6 4 39 39 H 1.09010 * 109.47125 * 180.02562 * 8 7 6 40 40 H 1.09007 * 109.47328 * 299.99587 * 8 7 6 41 41 H 0.97000 * 119.99900 * 265.00544 * 11 9 8 42 42 H 1.08006 * 119.96727 * 359.97159 * 13 12 11 43 43 H 1.07994 * 119.93093 * 179.97438 * 14 13 12 44 44 H 1.07999 * 119.96309 * 179.97438 * 15 14 13 45 45 H 0.97006 * 119.99640 * 179.97438 * 21 20 18 46 46 H 1.08001 * 120.06483 * 359.97438 * 26 12 11 47 47 H 1.09001 * 109.47369 * 299.99478 * 27 9 8 48 48 H 1.08999 * 109.47292 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5300 -2.1637 1.2493 7 6 2.0404 -2.8851 2.4982 8 6 3.5704 -2.8850 2.4977 9 6 4.0804 -1.4426 2.4978 10 1 5.1704 -1.4426 2.4979 11 7 3.5925 -0.7521 3.6942 12 6 4.2942 -0.8587 4.8971 13 6 5.4560 -1.6194 4.9599 14 6 6.1502 -1.7257 6.1495 15 6 5.6923 -1.0772 7.2804 16 6 4.5313 -0.3164 7.2246 17 8 4.0818 0.3200 8.3364 18 6 3.0161 1.1324 8.1881 19 1 2.5096 1.1902 7.2360 20 6 2.5706 1.8937 9.2578 21 7 3.1874 1.8229 10.4177 22 14 1.0936 3.0188 9.0524 23 1 0.5830 2.9166 7.6618 24 1 0.0269 2.6138 10.0030 25 1 1.4970 4.4208 9.3293 26 6 3.8360 -0.2006 6.0293 27 6 3.5700 -0.7212 1.2488 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 0.4400 -2.1637 1.2492 36 1 1.8933 -2.6775 0.3593 37 1 1.6774 -2.3714 3.3885 38 1 1.6775 -3.9129 2.4980 39 1 3.9341 -3.3994 3.3874 40 1 3.9335 -3.3988 1.6076 41 1 2.7820 -0.2209 3.6510 42 1 5.8158 -2.1285 4.0779 43 1 7.0524 -2.3175 6.1960 44 1 6.2370 -1.1626 8.2090 45 1 2.8758 2.3558 11.1659 46 1 2.9365 0.3953 5.9820 47 1 3.9331 -1.2349 0.3586 48 1 3.9330 0.3066 1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230990210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:21 Heat of formation + Delta-G solvation = -30.706841 kcal Electronic energy + Delta-G solvation = -25260.587165 eV Core-core repulsion = 21893.706610 eV Total energy + Delta-G solvation = -3366.880555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.96677 -38.72455 -36.82807 -35.35590 -33.28623 -32.12441 -30.64623 -29.61101 -28.58698 -27.69670 -27.01037 -25.20101 -23.21949 -22.59414 -21.54553 -21.01308 -20.08763 -19.10125 -17.68007 -17.30918 -15.99236 -15.76732 -15.03394 -14.93013 -14.66987 -14.18663 -14.10305 -14.05791 -13.73315 -13.54783 -13.43933 -13.11563 -12.82356 -12.60347 -12.42206 -12.38681 -12.00716 -11.83309 -11.64103 -11.58869 -11.41826 -11.23655 -11.14524 -10.96347 -10.85091 -10.69104 -10.63742 -10.42412 -10.30296 -10.09276 -9.94034 -9.32398 -9.27881 -8.71593 -7.29052 -6.67939 -6.37231 -3.96169 2.44714 2.64041 3.15980 3.17024 3.22098 3.86721 4.02708 4.44343 4.51972 4.61051 4.76550 4.87313 4.99953 5.06097 5.19473 5.24325 5.25725 5.32966 5.41707 5.43041 5.46212 5.53434 5.55073 5.60585 5.68888 5.74802 5.75753 5.81445 5.87283 5.97372 5.99169 6.02450 6.08736 6.11138 6.21589 6.27913 6.33273 6.34556 6.40303 6.46030 6.72913 6.74585 7.11881 7.21083 7.45692 7.55453 7.74924 8.09755 8.11808 8.30327 9.09300 9.82963 10.81407 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.004081 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.583467 B = 6859.522853 C = 8436.748493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.082 4.082 5 H 0.070 0.930 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.134 4.134 9 C 0.158 3.842 10 H 0.076 0.924 11 N -0.744 5.744 12 C 0.253 3.747 13 C -0.280 4.280 14 C -0.040 4.040 15 C -0.239 4.239 16 C 0.190 3.810 17 O -0.180 6.180 18 C -0.387 4.387 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.938 3.062 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.304 4.304 27 C -0.122 4.122 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.392 0.608 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.268 0.732 46 H 0.122 0.878 47 H 0.070 0.930 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -5.776 -21.145 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.101 4.101 5 H 0.088 0.912 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.173 4.173 9 C 0.052 3.948 10 H 0.094 0.906 11 N -0.376 5.376 12 C 0.151 3.849 13 C -0.303 4.303 14 C -0.059 4.059 15 C -0.260 4.260 16 C 0.136 3.864 17 O -0.083 6.083 18 C -0.464 4.464 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.328 4.328 27 C -0.160 4.160 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.227 0.773 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.078 0.922 46 H 0.140 0.860 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.387 -5.768 -20.808 21.724 hybrid contribution -1.109 0.762 -0.125 1.352 sum -3.497 -5.006 -20.933 21.806 Atomic orbital electron populations 1.21905 0.95436 1.01763 1.01627 1.21130 0.95608 0.96127 0.98005 1.21915 1.01295 0.95968 1.01661 1.21189 0.95132 0.95881 0.97891 0.91158 1.21643 1.00218 0.95066 0.98180 1.21450 0.95731 0.99936 0.98290 1.22014 0.96141 0.97329 1.01844 1.20733 0.98339 0.91099 0.84677 0.90625 1.44672 1.29524 1.56469 1.06960 1.17469 0.90326 0.92109 0.84975 1.20096 0.99984 1.11719 0.98480 1.20371 0.97382 0.96282 0.91910 1.20020 0.98974 1.07671 0.99298 1.19067 0.91112 0.90100 0.86138 1.83985 1.44231 1.52267 1.27866 1.21333 1.05586 1.20307 0.99129 0.89201 1.25254 0.99092 0.97626 0.94609 1.70055 1.39511 1.39197 1.01322 0.85688 0.79947 0.79392 0.78611 1.19266 1.20231 1.20224 1.20494 1.06472 1.13039 0.92762 1.21914 0.95521 1.01153 0.97395 0.93041 0.92637 0.92437 0.91466 0.92578 0.92321 0.93036 0.91961 0.92308 0.91510 0.92543 0.91375 0.92049 0.77274 0.87805 0.87371 0.87064 0.92232 0.85994 0.91099 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.84 37.16 0.33 -0.86 16 2 C -0.09 -0.74 2.51 -90.62 -0.23 -0.96 16 3 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 4 C -0.08 -0.75 1.60 -90.61 -0.15 -0.90 16 5 H 0.07 0.74 6.51 -51.93 -0.34 0.41 16 6 C -0.11 -1.02 4.85 -26.73 -0.13 -1.15 16 7 C -0.12 -1.24 5.77 -26.73 -0.15 -1.40 16 8 C -0.13 -1.48 5.54 -26.73 -0.15 -1.63 16 9 C 0.16 1.84 2.48 -67.93 -0.17 1.67 16 10 H 0.08 0.93 6.48 -51.93 -0.34 0.59 16 11 N -0.74 -10.90 4.40 -52.19 -0.23 -11.13 16 12 C 0.25 4.72 6.63 -83.81 -0.56 4.16 16 13 C -0.28 -5.00 8.85 -39.33 -0.35 -5.35 16 14 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 15 C -0.24 -5.30 9.99 -39.36 -0.39 -5.70 16 16 C 0.19 4.77 6.65 -39.14 -0.26 4.51 16 17 O -0.18 -5.30 9.76 0.04 0.00 -5.30 16 18 C -0.39 -11.07 9.49 30.88 0.29 -10.78 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.87 -25.88 13.67 55.48 0.76 -25.12 16 22 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 C -0.30 -6.79 9.01 -39.20 -0.35 -7.15 16 27 C -0.12 -1.16 4.54 -26.73 -0.12 -1.28 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.84 7.60 -51.93 -0.39 0.45 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.88 7.71 -51.92 -0.40 0.47 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.39 5.57 6.88 -40.82 -0.28 5.29 16 42 H 0.10 1.60 6.11 -52.48 -0.32 1.28 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 2.76 5.63 -52.49 -0.30 2.47 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -30.50 365.34 -9.30 -39.80 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.76 Total: 8.26 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -2.55 Total: -27.94 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.53 Total: -36.25 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: 0.00 Total: -5.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.50 -9.30 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230990210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.093 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds