Wall clock time and date at job start Tue Mar 31 2020 09:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 C 1.53000 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47077 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99860 * 90.00358 * 5 4 3 7 7 O 1.21587 * 119.99951 * 356.01301 * 6 5 4 8 8 C 1.47642 * 120.00095 * 176.01414 * 6 5 4 9 9 C 1.40009 * 119.89758 * 227.64584 * 8 6 5 10 10 C 1.36320 * 120.10948 * 179.71356 * 9 8 6 11 11 C 1.40884 * 119.88992 * 0.58013 * 10 9 8 12 12 C 1.41109 * 120.10334 * 179.67722 * 11 10 9 13 13 H 1.07995 * 119.99747 * 208.92276 * 12 11 10 14 14 C 1.40219 * 120.00277 * 28.91769 * 12 11 10 15 15 N 1.30646 * 120.00042 * 9.98867 * 14 12 11 16 16 Si 1.86799 * 120.00368 * 189.98952 * 14 12 11 17 17 H 1.48498 * 109.46742 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47215 * 119.99716 * 16 14 12 19 19 H 1.48496 * 109.47301 * 240.00048 * 16 14 12 20 20 C 1.40890 * 119.79429 * 359.69044 * 11 10 9 21 21 C 1.36319 * 119.89151 * 0.02562 * 20 11 10 22 22 C 1.46503 * 120.00091 * 270.27648 * 5 4 3 23 23 H 1.09000 * 109.47125 * 182.55624 * 22 5 4 24 24 C 1.53002 * 109.46872 * 62.55525 * 22 5 4 25 25 C 1.52998 * 109.47056 * 302.55682 * 22 5 4 26 26 C 1.53002 * 109.47267 * 295.00012 * 25 22 5 27 27 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46927 * 299.99863 * 1 2 3 29 29 H 1.08997 * 109.47215 * 59.99881 * 1 2 3 30 30 H 1.08999 * 109.46927 * 240.00137 * 2 1 3 31 31 H 1.08997 * 109.47215 * 120.00119 * 2 1 3 32 32 H 1.08999 * 109.47162 * 60.00281 * 3 2 1 33 33 H 1.08997 * 109.47226 * 300.00112 * 3 2 1 34 34 H 1.09005 * 109.47335 * 60.00095 * 4 3 2 35 35 H 1.08999 * 109.47698 * 300.00299 * 4 3 2 36 36 H 1.08006 * 119.94750 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.05384 * 180.24501 * 10 9 8 38 38 H 0.96997 * 120.00613 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.05572 * 179.97438 * 20 11 10 40 40 H 1.07996 * 119.94694 * 179.97438 * 21 20 11 41 41 H 1.08994 * 109.47019 * 60.00132 * 24 22 5 42 42 H 1.09006 * 109.46906 * 179.97438 * 24 22 5 43 43 H 1.09000 * 109.47326 * 299.99976 * 24 22 5 44 44 H 1.09005 * 109.47291 * 54.99926 * 25 22 5 45 45 H 1.09003 * 109.47375 * 174.99690 * 25 22 5 46 46 H 1.08998 * 109.46675 * 180.02562 * 26 25 22 47 47 H 1.09001 * 109.46585 * 299.99771 * 26 25 22 48 48 H 1.08996 * 109.46930 * 59.99850 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2825 3.4597 1.1669 7 8 4.0112 2.9136 2.2188 8 6 4.8575 4.8195 1.1680 9 6 5.9281 5.1239 2.0173 10 6 6.4662 6.3764 2.0176 11 6 5.9352 7.3688 1.1702 12 6 6.4843 8.6687 1.1717 13 1 5.8630 9.5175 0.9274 14 6 7.8365 8.8582 1.4906 15 7 8.6337 7.8284 1.5946 16 14 8.4982 10.5831 1.7667 17 1 7.4006 11.5680 1.5923 18 1 9.0439 10.6895 3.1437 19 1 9.5759 10.8631 0.7842 20 6 4.8542 7.0594 0.3213 21 6 4.3265 5.8024 0.3239 22 6 4.2972 3.5157 -1.2690 23 1 4.6982 4.5097 -1.0710 24 6 2.9802 3.6407 -2.0375 25 6 5.3010 2.7179 -2.1038 26 6 6.6552 2.6987 -1.3919 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 6.3311 4.3639 2.6704 37 1 7.2946 6.6091 2.6703 38 1 9.5693 7.9595 1.8148 39 1 4.4436 7.8170 -0.3297 40 1 3.4976 5.5644 -0.3262 41 1 2.2651 4.2091 -1.4428 42 1 3.1578 4.1559 -2.9815 43 1 2.5792 2.6467 -2.2355 44 1 4.9408 1.6964 -2.2267 45 1 5.4116 3.1844 -3.0827 46 1 7.3704 2.1307 -1.9869 47 1 7.0154 3.7202 -1.2690 48 1 6.5446 2.2322 -0.4131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270414324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:13 Heat of formation + Delta-G solvation = -39.648306 kcal Electronic energy + Delta-G solvation = -25626.149635 eV Core-core repulsion = 22258.881349 eV Total energy + Delta-G solvation = -3367.268286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -39.87893 -37.36380 -36.49040 -35.10371 -33.77042 -32.12620 -30.39151 -29.96054 -29.41502 -28.60112 -25.88814 -23.67811 -23.59175 -21.89541 -21.17081 -20.83215 -20.56018 -18.55200 -17.51647 -16.94314 -15.53841 -15.41786 -15.16966 -14.96813 -14.39163 -14.07662 -13.71801 -13.63481 -13.44151 -13.19781 -12.95437 -12.73146 -12.59211 -12.51606 -12.23891 -12.05111 -11.84162 -11.69383 -11.46055 -11.37932 -11.27478 -11.14452 -11.00429 -10.92754 -10.86769 -10.69940 -10.66637 -10.34262 -10.19602 -9.96927 -9.50997 -9.35744 -8.91598 -8.20514 -7.66181 -7.40793 -6.89015 -4.55408 2.37319 2.94126 2.99112 3.01426 3.04646 3.51897 3.69832 3.81826 4.53220 4.87584 4.91397 4.97909 5.11574 5.21260 5.28017 5.31664 5.51649 5.55128 5.63039 5.67421 5.70973 5.74587 5.78123 5.84039 5.88784 5.95767 5.99284 6.04061 6.11707 6.13985 6.21045 6.25732 6.30537 6.37235 6.42361 6.47648 6.61835 6.82286 6.89751 7.06700 7.09231 7.17121 7.47984 7.61643 7.83235 7.90885 8.06587 8.15342 8.48431 8.70823 8.79510 8.98523 10.02714 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.003471 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.342163 B = 8066.059938 C = 8273.665505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.117 3.883 5 N -0.607 5.607 6 C 0.578 3.422 7 O -0.563 6.563 8 C -0.264 4.264 9 C -0.049 4.049 10 C -0.168 4.168 11 C 0.125 3.875 12 C -0.451 4.451 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.786 5.786 16 Si 0.913 3.087 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.228 4.228 21 C -0.064 4.064 22 C 0.114 3.886 23 H 0.124 0.876 24 C -0.165 4.165 25 C -0.130 4.130 26 C -0.149 4.149 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 -8.989 -7.638 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.179 4.179 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.371 3.629 7 O -0.443 6.443 8 C -0.268 4.268 9 C -0.069 4.069 10 C -0.187 4.187 11 C 0.122 3.878 12 C -0.479 4.479 13 H 0.100 0.900 14 C -0.147 4.147 15 N -0.410 5.410 16 Si 0.738 3.262 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.247 4.247 21 C -0.082 4.082 22 C 0.011 3.989 23 H 0.141 0.859 24 C -0.223 4.223 25 C -0.168 4.168 26 C -0.206 4.206 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.331 -9.335 -7.036 13.294 hybrid contribution 0.381 0.677 -0.024 0.777 sum -5.949 -8.658 -7.060 12.657 Atomic orbital electron populations 1.21752 0.96010 1.01217 1.01804 1.21452 0.95767 0.96943 1.01768 1.22172 0.96251 0.96638 1.02853 1.21309 0.93406 0.83694 1.02195 1.47923 1.66736 1.13198 1.06090 1.18785 0.75723 0.86137 0.82228 1.90654 1.53096 1.69019 1.31483 1.18886 1.06185 0.92499 1.09239 1.20366 0.94271 0.96487 0.95761 1.21064 1.02985 0.92764 1.01875 1.17754 0.89370 0.93152 0.87542 1.19773 0.94528 0.93937 1.39707 0.90040 1.26022 0.97167 0.99182 0.92285 1.69713 1.06103 1.31994 1.33193 0.86168 0.79392 0.81830 0.78860 1.18290 1.19586 1.19796 1.20735 1.03851 0.95793 1.04344 1.20398 0.97824 0.93643 0.96371 1.21685 0.94776 0.99126 0.83320 0.85913 1.22303 0.97846 1.01862 1.00247 1.21865 0.95927 1.00152 0.98866 1.21697 0.95985 1.02608 1.00316 0.93022 0.92741 0.92921 0.92281 0.92007 0.91559 0.91423 0.91239 0.90624 0.88985 0.85872 0.90565 0.88511 0.88593 0.92299 0.91809 0.92297 0.92329 0.91303 0.93437 0.91918 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.14 -1.78 5.27 -26.73 -0.14 -1.92 16 4 C 0.12 1.65 4.87 -4.04 -0.02 1.63 16 5 N -0.61 -10.02 1.85 -167.28 -0.31 -10.33 16 6 C 0.58 12.13 7.23 -12.42 -0.09 12.04 16 7 O -0.56 -13.43 16.63 5.29 0.09 -13.34 16 8 C -0.26 -5.90 5.15 -104.73 -0.54 -6.44 16 9 C -0.05 -1.19 9.63 -39.61 -0.38 -1.57 16 10 C -0.17 -4.23 8.60 -39.27 -0.34 -4.57 16 11 C 0.12 3.15 5.56 -106.80 -0.59 2.56 16 12 C -0.45 -11.26 9.06 -37.75 -0.34 -11.60 16 13 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 14 C 0.07 1.72 5.27 -17.31 -0.09 1.63 16 15 N -0.79 -19.24 10.79 55.56 0.60 -18.64 16 16 Si 0.91 17.72 29.57 -169.99 -5.03 12.70 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.23 -5.21 9.73 -39.27 -0.38 -5.59 16 21 C -0.06 -1.35 7.21 -39.61 -0.29 -1.63 16 22 C 0.11 1.66 1.83 -67.93 -0.12 1.54 16 23 H 0.12 2.10 4.01 -51.93 -0.21 1.89 16 24 C -0.16 -1.97 7.93 37.16 0.29 -1.68 16 25 C -0.13 -1.65 5.32 -26.73 -0.14 -1.79 16 26 C -0.15 -2.16 9.80 37.16 0.36 -1.79 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.80 5.39 -51.93 -0.28 0.52 16 34 H 0.07 0.83 6.20 -51.93 -0.32 0.51 16 35 H 0.08 1.19 7.48 -51.93 -0.39 0.80 16 36 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 37 H 0.12 3.22 6.19 -52.49 -0.32 2.89 16 38 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 39 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 40 H 0.10 1.78 5.76 -52.49 -0.30 1.47 16 41 H 0.06 0.76 7.49 -51.93 -0.39 0.37 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.64 6.06 -51.93 -0.31 0.32 16 44 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.87 7.75 -51.93 -0.40 0.47 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -27.42 374.87 -9.48 -36.90 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.88 Total: 8.72 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.60 Total: -21.65 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.29 Total: -28.97 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.42 -9.48 -36.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270414324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.747 kcal (2) G-P(sol) polarization free energy of solvation -27.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds