Wall clock time and date at job start Tue Mar 31 2020 09:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 C 1.53000 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47077 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99860 * 90.00358 * 5 4 3 7 7 O 1.21587 * 119.99951 * 356.01301 * 6 5 4 8 8 C 1.47642 * 120.00095 * 176.01414 * 6 5 4 9 9 C 1.40009 * 119.89758 * 227.64584 * 8 6 5 10 10 C 1.36320 * 120.10948 * 179.71356 * 9 8 6 11 11 C 1.40884 * 119.88992 * 0.58013 * 10 9 8 12 12 C 1.41109 * 120.10334 * 179.67722 * 11 10 9 13 13 H 1.07995 * 119.99747 * 208.92276 * 12 11 10 14 14 C 1.40219 * 120.00277 * 28.91769 * 12 11 10 15 15 N 1.30646 * 120.00042 * 9.98867 * 14 12 11 16 16 Si 1.86799 * 120.00368 * 189.98952 * 14 12 11 17 17 H 1.48498 * 109.46742 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47215 * 119.99716 * 16 14 12 19 19 H 1.48496 * 109.47301 * 240.00048 * 16 14 12 20 20 C 1.40890 * 119.79429 * 359.69044 * 11 10 9 21 21 C 1.36319 * 119.89151 * 0.02562 * 20 11 10 22 22 C 1.46503 * 120.00091 * 270.27648 * 5 4 3 23 23 H 1.09000 * 109.47125 * 182.55624 * 22 5 4 24 24 C 1.53002 * 109.46872 * 62.55525 * 22 5 4 25 25 C 1.52998 * 109.47056 * 302.55682 * 22 5 4 26 26 C 1.53002 * 109.47267 * 295.00012 * 25 22 5 27 27 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46927 * 299.99863 * 1 2 3 29 29 H 1.08997 * 109.47215 * 59.99881 * 1 2 3 30 30 H 1.08999 * 109.46927 * 240.00137 * 2 1 3 31 31 H 1.08997 * 109.47215 * 120.00119 * 2 1 3 32 32 H 1.08999 * 109.47162 * 60.00281 * 3 2 1 33 33 H 1.08997 * 109.47226 * 300.00112 * 3 2 1 34 34 H 1.09005 * 109.47335 * 60.00095 * 4 3 2 35 35 H 1.08999 * 109.47698 * 300.00299 * 4 3 2 36 36 H 1.08006 * 119.94750 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.05384 * 180.24501 * 10 9 8 38 38 H 0.96997 * 120.00613 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.05572 * 179.97438 * 20 11 10 40 40 H 1.07996 * 119.94694 * 179.97438 * 21 20 11 41 41 H 1.08994 * 109.47019 * 60.00132 * 24 22 5 42 42 H 1.09006 * 109.46906 * 179.97438 * 24 22 5 43 43 H 1.09000 * 109.47326 * 299.99976 * 24 22 5 44 44 H 1.09005 * 109.47291 * 54.99926 * 25 22 5 45 45 H 1.09003 * 109.47375 * 174.99690 * 25 22 5 46 46 H 1.08998 * 109.46675 * 180.02562 * 26 25 22 47 47 H 1.09001 * 109.46585 * 299.99771 * 26 25 22 48 48 H 1.08996 * 109.46930 * 59.99850 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2825 3.4597 1.1669 7 8 4.0112 2.9136 2.2188 8 6 4.8575 4.8195 1.1680 9 6 5.9281 5.1239 2.0173 10 6 6.4662 6.3764 2.0176 11 6 5.9352 7.3688 1.1702 12 6 6.4843 8.6687 1.1717 13 1 5.8630 9.5175 0.9274 14 6 7.8365 8.8582 1.4906 15 7 8.6337 7.8284 1.5946 16 14 8.4982 10.5831 1.7667 17 1 7.4006 11.5680 1.5923 18 1 9.0439 10.6895 3.1437 19 1 9.5759 10.8631 0.7842 20 6 4.8542 7.0594 0.3213 21 6 4.3265 5.8024 0.3239 22 6 4.2972 3.5157 -1.2690 23 1 4.6982 4.5097 -1.0710 24 6 2.9802 3.6407 -2.0375 25 6 5.3010 2.7179 -2.1038 26 6 6.6552 2.6987 -1.3919 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 6.3311 4.3639 2.6704 37 1 7.2946 6.6091 2.6703 38 1 9.5693 7.9595 1.8148 39 1 4.4436 7.8170 -0.3297 40 1 3.4976 5.5644 -0.3262 41 1 2.2651 4.2091 -1.4428 42 1 3.1578 4.1559 -2.9815 43 1 2.5792 2.6467 -2.2355 44 1 4.9408 1.6964 -2.2267 45 1 5.4116 3.1844 -3.0827 46 1 7.3704 2.1307 -1.9869 47 1 7.0154 3.7202 -1.2690 48 1 6.5446 2.2322 -0.4131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270414324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:08 Heat of formation + Delta-G solvation = -51.010595 kcal Electronic energy + Delta-G solvation = -25626.642341 eV Core-core repulsion = 22258.881349 eV Total energy + Delta-G solvation = -3367.760992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 7.83 seconds Orbital eigenvalues (eV) -41.39025 -39.09195 -38.00147 -36.14206 -35.51183 -33.34902 -32.08483 -31.62748 -30.70854 -29.84406 -27.59537 -24.96587 -24.64595 -23.50266 -22.74534 -22.04569 -21.91954 -19.98719 -19.33474 -18.44114 -17.18205 -17.00203 -16.38532 -16.15386 -15.89554 -15.59628 -15.21695 -14.84540 -14.62831 -14.38227 -14.36249 -14.26607 -13.91443 -13.75684 -13.61733 -13.54225 -13.30707 -13.08273 -12.82372 -12.74060 -12.67212 -12.38724 -12.36524 -12.10404 -12.01242 -11.84306 -11.77664 -11.71199 -11.51078 -11.36334 -11.29459 -11.10986 -10.60690 -9.62640 -9.49540 -9.23213 -8.68098 -6.45352 0.58097 1.11037 1.39399 1.42938 1.54778 1.96380 2.17010 2.20640 2.73339 3.64577 3.76549 3.87982 3.98235 4.06522 4.20426 4.23342 4.31167 4.32636 4.37410 4.46129 4.54528 4.61876 4.68039 4.76387 4.78834 4.90233 4.94452 4.96773 4.98240 4.99182 5.05841 5.10421 5.13905 5.19089 5.26206 5.28969 5.31348 5.35436 5.39847 5.41733 5.52025 5.61545 5.77028 5.81723 6.01195 6.03304 6.23523 6.55482 6.59998 6.83237 6.91944 7.36762 8.26331 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.003471 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.342163 B = 8066.059938 C = 8273.665505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.132 4.132 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.573 3.427 7 O -0.601 6.601 8 C -0.267 4.267 9 C -0.062 4.062 10 C -0.187 4.187 11 C 0.099 3.901 12 C -0.481 4.481 13 H 0.086 0.914 14 C 0.032 3.968 15 N -0.817 5.817 16 Si 0.987 3.013 17 H -0.254 1.254 18 H -0.267 1.267 19 H -0.264 1.264 20 C -0.235 4.235 21 C -0.049 4.049 22 C 0.106 3.894 23 H 0.096 0.904 24 C -0.159 4.159 25 C -0.123 4.123 26 C -0.147 4.147 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.291 0.709 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.033 0.967 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -9.541 -10.461 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.170 4.170 4 C -0.008 4.008 5 N -0.324 5.324 6 C 0.366 3.634 7 O -0.484 6.484 8 C -0.271 4.271 9 C -0.081 4.081 10 C -0.206 4.206 11 C 0.096 3.904 12 C -0.509 4.509 13 H 0.104 0.896 14 C -0.184 4.184 15 N -0.442 5.442 16 Si 0.808 3.192 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.189 1.189 20 C -0.255 4.255 21 C -0.067 4.067 22 C 0.004 3.996 23 H 0.113 0.887 24 C -0.216 4.216 25 C -0.161 4.161 26 C -0.204 4.204 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.052 0.948 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.513 -9.912 -9.908 15.901 hybrid contribution 0.733 0.723 0.804 1.306 sum -6.780 -9.190 -9.103 14.604 Atomic orbital electron populations 1.21747 0.95172 1.02141 1.01648 1.21439 0.96472 0.95195 1.02461 1.22087 0.94805 0.98219 1.01914 1.21534 0.94562 0.81975 1.02739 1.47915 1.64983 1.14001 1.05508 1.18607 0.75909 0.85763 0.83135 1.90629 1.55052 1.69607 1.33157 1.19125 1.05375 0.93998 1.08622 1.20430 0.95232 0.96042 0.96414 1.20953 1.03366 0.93624 1.02702 1.18080 0.90525 0.93566 0.88209 1.20043 0.95573 0.94002 1.41304 0.89595 1.26899 0.96932 1.03255 0.91313 1.69779 1.06735 1.34202 1.33502 0.85067 0.78762 0.76568 0.78825 1.17764 1.19223 1.18867 1.20962 1.03417 0.96878 1.04220 1.20622 0.97846 0.92513 0.95720 1.21861 0.97047 0.97934 0.82774 0.88663 1.22261 0.95642 1.03249 1.00474 1.21859 0.93820 1.01377 0.99026 1.21669 0.98039 1.00827 0.99892 0.91591 0.93984 0.92029 0.90063 0.92847 0.94862 0.89915 0.87944 0.92760 0.89621 0.87669 0.89836 0.86785 0.85494 0.93230 0.89570 0.90352 0.89978 0.88935 0.91249 0.94822 0.95022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.14 5.93 30.59 0.18 -1.96 16 3 C -0.13 -3.08 5.27 30.59 0.16 -2.92 16 4 C 0.11 3.01 4.87 86.38 0.42 3.43 16 5 N -0.59 -19.04 1.85 -801.42 -1.49 -20.53 16 6 C 0.57 24.57 7.23 86.73 0.63 25.19 16 7 O -0.60 -29.75 16.63 -3.99 -0.07 -29.82 16 8 C -0.27 -12.29 5.15 -19.93 -0.10 -12.39 16 9 C -0.06 -3.14 9.63 22.25 0.21 -2.93 16 10 C -0.19 -10.00 8.60 22.47 0.19 -9.81 16 11 C 0.10 5.18 5.56 -21.28 -0.12 5.06 16 12 C -0.48 -24.62 9.06 23.46 0.21 -24.41 16 13 H 0.09 4.17 7.87 -2.91 -0.02 4.15 16 14 C 0.03 1.55 5.27 85.35 0.45 2.00 16 15 N -0.82 -41.39 10.79 21.87 0.24 -41.15 16 16 Si 0.99 36.45 29.57 68.60 2.03 38.48 16 17 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 18 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 20 C -0.24 -10.86 9.73 22.47 0.22 -10.64 16 21 C -0.05 -2.05 7.21 22.25 0.16 -1.89 16 22 C 0.11 2.85 1.83 44.99 0.08 2.93 16 23 H 0.10 3.14 4.01 -2.39 -0.01 3.13 16 24 C -0.16 -3.18 7.93 71.98 0.57 -2.61 16 25 C -0.12 -2.73 5.32 30.59 0.16 -2.57 16 26 C -0.15 -4.12 9.80 71.98 0.71 -3.41 16 27 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.68 5.39 -2.39 -0.01 1.67 16 34 H 0.10 2.05 6.20 -2.38 -0.01 2.03 16 35 H 0.05 1.69 7.48 -2.39 -0.02 1.68 16 36 H 0.09 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.11 5.90 6.19 -2.91 -0.02 5.88 16 38 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.13 4.51 5.76 -2.91 -0.02 4.49 16 41 H 0.05 1.10 7.49 -2.39 -0.02 1.09 16 42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.08 1.29 6.06 -2.39 -0.01 1.27 16 44 H 0.08 1.48 6.38 -2.38 -0.02 1.46 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.03 1.00 7.75 -2.39 -0.02 0.99 16 Total: -1.00 -63.31 374.87 6.50 -56.81 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.93 Total: 34.85 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 4.85 Total: -38.65 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -1.25 Total: -61.68 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.07 Total: -29.82 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -63.31 6.50 -56.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270414324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.804 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.83 seconds