Wall clock time and date at job start Tue Mar 31 2020 08:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.53002 * 109.47264 * 120.00183 * 2 1 3 5 5 H 1.09002 * 109.46957 * 53.18025 * 4 2 1 6 6 C 1.53001 * 109.46911 * 293.17884 * 4 2 1 7 7 N 1.46493 * 109.47108 * 67.20743 * 6 4 2 8 8 C 1.34779 * 119.99911 * 185.54203 * 7 6 4 9 9 O 1.21277 * 119.99916 * 0.27307 * 8 7 6 10 10 C 1.50700 * 120.00020 * 180.27162 * 8 7 6 11 11 C 1.53003 * 109.47275 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47210 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99937 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99676 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00242 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46558 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47028 * 119.99679 * 16 14 12 19 19 H 1.48494 * 109.47359 * 239.99876 * 16 14 12 20 20 C 1.52999 * 109.47034 * 173.17950 * 4 2 1 21 21 C 1.50705 * 109.46887 * 295.17633 * 20 4 2 22 22 C 1.38234 * 120.00050 * 276.39088 * 21 20 4 23 23 C 1.38241 * 119.99904 * 179.76679 * 22 21 20 24 24 C 1.38235 * 119.99804 * 0.51228 * 23 22 21 25 25 C 1.38244 * 119.99802 * 359.74295 * 24 23 22 26 26 C 1.38228 * 120.00136 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46969 * 311.84000 * 1 2 3 28 28 H 1.08997 * 109.47196 * 71.84655 * 1 2 3 29 29 H 1.09005 * 109.46539 * 191.84078 * 1 2 3 30 30 H 1.09004 * 109.47330 * 240.00428 * 2 1 3 31 31 H 1.08995 * 109.47415 * 184.03885 * 3 2 1 32 32 H 1.09004 * 109.47363 * 304.04529 * 3 2 1 33 33 H 1.09005 * 109.46603 * 64.04251 * 3 2 1 34 34 H 1.08996 * 109.47220 * 307.20537 * 6 4 2 35 35 H 1.09007 * 109.46824 * 187.20251 * 6 4 2 36 36 H 0.97006 * 120.00430 * 5.81547 * 7 6 4 37 37 H 1.09002 * 109.47275 * 300.00261 * 10 8 7 38 38 H 1.09004 * 109.46990 * 60.00232 * 10 8 7 39 39 H 1.09002 * 109.46907 * 300.00778 * 11 10 8 40 40 H 1.09004 * 109.46849 * 60.00235 * 11 10 8 41 41 H 0.97005 * 119.99673 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.47488 * 55.17419 * 20 4 2 43 43 H 1.08999 * 109.46977 * 175.18073 * 20 4 2 44 44 H 1.07998 * 119.99884 * 0.02562 * 22 21 20 45 45 H 1.07990 * 120.00029 * 180.23055 * 23 22 21 46 46 H 1.07994 * 120.00200 * 179.72605 * 24 23 22 47 47 H 1.08005 * 119.99289 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.99639 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5805 -1.7077 1.3123 6 6 1.6747 0.0921 2.4926 7 7 0.2202 0.0906 2.6671 8 6 -0.3429 0.8385 3.6367 9 8 0.3541 1.5165 4.3614 10 6 -1.8387 0.8322 3.8201 11 6 -2.2142 1.7574 4.9795 12 6 -3.7099 1.7506 5.1634 13 1 -4.3306 1.1466 4.5182 14 6 -4.2859 2.5156 6.1553 15 7 -3.5300 3.2508 6.9413 16 14 -6.1400 2.5079 6.3828 17 1 -6.7582 1.6059 5.3780 18 1 -6.4691 2.0274 7.7489 19 1 -6.6667 3.8845 6.2021 20 6 3.5604 -0.8713 1.1665 21 6 3.9142 -1.7705 0.0099 22 6 3.8928 -3.1433 0.1701 23 6 4.2127 -3.9682 -0.8922 24 6 4.5642 -3.4199 -2.1115 25 6 4.5906 -2.0468 -2.2701 26 6 4.2661 -1.2222 -1.2093 27 1 -0.3633 0.6855 0.7656 28 1 -0.3633 0.3202 -0.9765 29 1 -0.3632 -1.0059 0.2109 30 1 1.8934 -0.5138 -0.8900 31 1 3.1275 1.4434 -0.0724 32 1 1.6187 1.9769 -0.8515 33 1 1.7369 1.9349 0.9241 34 1 2.0252 1.1171 2.3721 35 1 2.1463 -0.3526 3.3690 36 1 -0.3373 -0.4517 2.0874 37 1 -2.3184 1.1818 2.9059 38 1 -2.1733 -0.1813 4.0415 39 1 -1.7344 1.4074 5.8936 40 1 -1.8795 2.7709 4.7586 41 1 -3.9353 3.7887 7.6395 42 1 4.0147 0.1082 1.0173 43 1 3.9334 -1.3075 2.0931 44 1 3.6222 -3.5716 1.1239 45 1 4.1924 -5.0407 -0.7682 46 1 4.8183 -4.0642 -2.9402 47 1 4.8656 -1.6186 -3.2227 48 1 4.2872 -0.1495 -1.3331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291901973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:27 Heat of formation + Delta-G solvation = -39.606242 kcal Electronic energy + Delta-G solvation = -24474.540432 eV Core-core repulsion = 21107.273970 eV Total energy + Delta-G solvation = -3367.266462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -1.24 seconds Orbital eigenvalues (eV) -40.20336 -39.18864 -37.59573 -33.68864 -33.41605 -32.75283 -31.17647 -31.01392 -29.72328 -27.38285 -26.57127 -25.07121 -23.20127 -22.84170 -21.65991 -21.24499 -19.98415 -18.79519 -17.06155 -16.78064 -16.35145 -15.73563 -15.56059 -15.40831 -15.11273 -14.57213 -14.42279 -14.36812 -13.82243 -13.69870 -13.50428 -13.05219 -12.99713 -12.71812 -12.38230 -12.33133 -12.15844 -12.09883 -11.78579 -11.55928 -11.29170 -11.22226 -11.12198 -10.93252 -10.85493 -10.60303 -10.56707 -10.37894 -9.92988 -9.63318 -9.18518 -9.13990 -9.01081 -8.87693 -8.59466 -8.30061 -5.94266 -3.98428 1.07865 1.12240 3.32488 3.33758 3.40436 3.43609 3.46369 3.69192 4.39126 4.45832 4.49235 4.64687 4.71175 4.74860 4.77529 4.86704 5.12097 5.18650 5.23542 5.29260 5.32086 5.40659 5.42092 5.49577 5.55360 5.57153 5.68326 5.73854 5.77238 5.84320 5.85064 5.93063 5.99335 6.09303 6.18581 6.21816 6.24481 6.26629 6.28118 6.35716 6.39889 6.73175 6.81794 6.93489 7.77124 7.89444 7.95780 8.09823 8.41435 8.85313 9.10736 9.65011 11.16693 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.002340 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.338715 B =11963.388704 C =12008.456417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.155 4.155 4 C -0.088 4.088 5 H 0.077 0.923 6 C 0.119 3.881 7 N -0.744 5.744 8 C 0.506 3.494 9 O -0.536 6.536 10 C -0.131 4.131 11 C 0.037 3.963 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.078 4.078 21 C -0.072 4.072 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.399 0.601 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -13.095 -20.192 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.108 4.108 3 C -0.212 4.212 4 C -0.107 4.107 5 H 0.095 0.905 6 C -0.005 4.005 7 N -0.401 5.401 8 C 0.294 3.706 9 O -0.412 6.412 10 C -0.171 4.171 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.116 4.116 21 C -0.072 4.072 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.133 4.133 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.234 -12.465 -19.497 28.853 hybrid contribution -1.234 -0.331 -0.183 1.291 sum 16.000 -12.796 -19.681 28.409 Atomic orbital electron populations 1.22242 0.95384 1.02006 1.02705 1.21135 0.95812 0.96361 0.97526 1.22017 1.00622 0.96058 1.02530 1.21438 0.94969 0.99480 0.94834 0.90486 1.21396 0.82012 1.00863 0.96254 1.46645 1.07375 1.49394 1.36722 1.21547 0.92150 0.78132 0.78729 1.90662 1.64725 1.41335 1.44473 1.21866 0.88615 1.03260 1.03352 1.18894 0.95569 0.94126 0.91464 1.21268 0.92198 1.26807 1.16107 0.92579 1.25034 0.98020 0.95491 0.95923 1.70015 1.34858 1.28412 1.19558 0.86542 0.85766 0.77747 0.77938 1.19765 1.21033 1.21037 1.20650 0.95365 0.99292 0.96310 1.19858 0.98243 0.93962 0.95144 1.21080 1.00316 0.93096 0.99090 1.21144 0.99546 0.99728 0.93269 1.21134 1.00737 0.95223 0.97524 1.21149 1.00077 0.93758 0.98810 1.21097 0.99695 0.99846 0.92706 0.90620 0.92743 0.92727 0.90865 0.92767 0.92797 0.91594 0.90785 0.92314 0.76309 0.90379 0.90384 0.95861 0.95843 0.93038 0.90293 0.90498 0.86093 0.86247 0.86380 0.86270 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 7.62 37.16 0.28 -1.27 16 2 C -0.09 -0.79 2.51 -90.62 -0.23 -1.02 16 3 C -0.16 -1.43 8.47 37.16 0.31 -1.12 16 4 C -0.09 -0.79 1.84 -90.62 -0.17 -0.96 16 5 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 6 C 0.12 1.44 4.74 -4.05 -0.02 1.42 16 7 N -0.74 -10.37 3.83 -60.30 -0.23 -10.60 16 8 C 0.51 9.78 7.83 -10.98 -0.09 9.69 16 9 O -0.54 -12.76 15.97 5.56 0.09 -12.67 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.84 16 11 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 12 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.08 -0.63 4.71 -27.88 -0.13 -0.76 16 21 C -0.07 -0.59 4.51 -104.62 -0.47 -1.06 16 22 C -0.12 -0.95 9.73 -39.58 -0.39 -1.34 16 23 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 24 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.91 8.30 -39.59 -0.33 -1.24 16 27 H 0.08 0.83 5.85 -51.93 -0.30 0.53 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.46 7.51 -51.93 -0.39 0.07 16 30 H 0.07 0.64 6.19 -51.93 -0.32 0.32 16 31 H 0.05 0.43 6.48 -51.93 -0.34 0.10 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 34 H 0.07 0.98 5.81 -51.93 -0.30 0.68 16 35 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.40 4.59 5.62 -40.82 -0.23 4.37 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.08 0.61 6.41 -51.93 -0.33 0.28 16 43 H 0.08 0.60 8.13 -51.93 -0.42 0.17 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 48 H 0.12 0.83 7.83 -52.49 -0.41 0.42 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -34.02 377.80 -9.79 -43.81 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.96 Total: 1.19 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -3.10 Total: -17.30 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.51 Total: -37.51 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.02 -9.79 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.205 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.23 seconds