Wall clock time and date at job start Tue Mar 31 2020 08:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.53002 * 109.47264 * 120.00183 * 2 1 3 5 5 H 1.09002 * 109.46957 * 53.18025 * 4 2 1 6 6 C 1.53001 * 109.46911 * 293.17884 * 4 2 1 7 7 N 1.46493 * 109.47108 * 67.20743 * 6 4 2 8 8 C 1.34779 * 119.99911 * 185.54203 * 7 6 4 9 9 O 1.21277 * 119.99916 * 0.27307 * 8 7 6 10 10 C 1.50700 * 120.00020 * 180.27162 * 8 7 6 11 11 C 1.53003 * 109.47275 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47210 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99937 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99676 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00242 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46558 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47028 * 119.99679 * 16 14 12 19 19 H 1.48494 * 109.47359 * 239.99876 * 16 14 12 20 20 C 1.52999 * 109.47034 * 173.17950 * 4 2 1 21 21 C 1.50705 * 109.46887 * 295.17633 * 20 4 2 22 22 C 1.38234 * 120.00050 * 276.39088 * 21 20 4 23 23 C 1.38241 * 119.99904 * 179.76679 * 22 21 20 24 24 C 1.38235 * 119.99804 * 0.51228 * 23 22 21 25 25 C 1.38244 * 119.99802 * 359.74295 * 24 23 22 26 26 C 1.38228 * 120.00136 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46969 * 311.84000 * 1 2 3 28 28 H 1.08997 * 109.47196 * 71.84655 * 1 2 3 29 29 H 1.09005 * 109.46539 * 191.84078 * 1 2 3 30 30 H 1.09004 * 109.47330 * 240.00428 * 2 1 3 31 31 H 1.08995 * 109.47415 * 184.03885 * 3 2 1 32 32 H 1.09004 * 109.47363 * 304.04529 * 3 2 1 33 33 H 1.09005 * 109.46603 * 64.04251 * 3 2 1 34 34 H 1.08996 * 109.47220 * 307.20537 * 6 4 2 35 35 H 1.09007 * 109.46824 * 187.20251 * 6 4 2 36 36 H 0.97006 * 120.00430 * 5.81547 * 7 6 4 37 37 H 1.09002 * 109.47275 * 300.00261 * 10 8 7 38 38 H 1.09004 * 109.46990 * 60.00232 * 10 8 7 39 39 H 1.09002 * 109.46907 * 300.00778 * 11 10 8 40 40 H 1.09004 * 109.46849 * 60.00235 * 11 10 8 41 41 H 0.97005 * 119.99673 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.47488 * 55.17419 * 20 4 2 43 43 H 1.08999 * 109.46977 * 175.18073 * 20 4 2 44 44 H 1.07998 * 119.99884 * 0.02562 * 22 21 20 45 45 H 1.07990 * 120.00029 * 180.23055 * 23 22 21 46 46 H 1.07994 * 120.00200 * 179.72605 * 24 23 22 47 47 H 1.08005 * 119.99289 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.99639 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5805 -1.7077 1.3123 6 6 1.6747 0.0921 2.4926 7 7 0.2202 0.0906 2.6671 8 6 -0.3429 0.8385 3.6367 9 8 0.3541 1.5165 4.3614 10 6 -1.8387 0.8322 3.8201 11 6 -2.2142 1.7574 4.9795 12 6 -3.7099 1.7506 5.1634 13 1 -4.3306 1.1466 4.5182 14 6 -4.2859 2.5156 6.1553 15 7 -3.5300 3.2508 6.9413 16 14 -6.1400 2.5079 6.3828 17 1 -6.7582 1.6059 5.3780 18 1 -6.4691 2.0274 7.7489 19 1 -6.6667 3.8845 6.2021 20 6 3.5604 -0.8713 1.1665 21 6 3.9142 -1.7705 0.0099 22 6 3.8928 -3.1433 0.1701 23 6 4.2127 -3.9682 -0.8922 24 6 4.5642 -3.4199 -2.1115 25 6 4.5906 -2.0468 -2.2701 26 6 4.2661 -1.2222 -1.2093 27 1 -0.3633 0.6855 0.7656 28 1 -0.3633 0.3202 -0.9765 29 1 -0.3632 -1.0059 0.2109 30 1 1.8934 -0.5138 -0.8900 31 1 3.1275 1.4434 -0.0724 32 1 1.6187 1.9769 -0.8515 33 1 1.7369 1.9349 0.9241 34 1 2.0252 1.1171 2.3721 35 1 2.1463 -0.3526 3.3690 36 1 -0.3373 -0.4517 2.0874 37 1 -2.3184 1.1818 2.9059 38 1 -2.1733 -0.1813 4.0415 39 1 -1.7344 1.4074 5.8936 40 1 -1.8795 2.7709 4.7586 41 1 -3.9353 3.7887 7.6395 42 1 4.0147 0.1082 1.0173 43 1 3.9334 -1.3075 2.0931 44 1 3.6222 -3.5716 1.1239 45 1 4.1924 -5.0407 -0.7682 46 1 4.8183 -4.0642 -2.9402 47 1 4.8656 -1.6186 -3.2227 48 1 4.2872 -0.1495 -1.3331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291901973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:22 Heat of formation + Delta-G solvation = -58.218858 kcal Electronic energy + Delta-G solvation = -24475.347536 eV Core-core repulsion = 21107.273970 eV Total energy + Delta-G solvation = -3368.073566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16102 -40.23481 -38.59115 -35.56917 -34.87061 -33.46292 -32.98181 -31.70384 -30.61873 -28.22159 -28.02308 -26.46586 -24.20660 -23.42261 -23.17981 -22.07659 -21.34620 -19.84710 -18.72212 -17.66368 -17.41025 -17.18731 -16.80839 -16.40593 -16.18692 -15.95928 -15.80375 -15.13588 -14.79145 -14.56402 -14.32738 -14.20888 -14.14827 -14.04200 -13.62276 -13.37738 -13.19997 -13.04585 -12.89704 -12.82903 -12.78668 -12.44149 -12.36802 -11.92182 -11.85088 -11.82889 -11.63478 -11.57340 -11.33958 -11.27524 -11.21006 -10.67394 -10.57470 -9.88057 -9.73469 -9.50602 -8.17712 -6.31676 0.51592 0.57179 1.42184 1.43710 1.57010 1.76034 2.30991 2.46371 2.95725 3.15190 3.64068 3.74930 3.94938 4.06862 4.10313 4.16052 4.23080 4.33996 4.41761 4.46159 4.51966 4.53487 4.54299 4.58548 4.67120 4.72367 4.79935 4.84432 4.88925 5.00802 5.06392 5.08609 5.11491 5.16286 5.23363 5.27364 5.34730 5.44080 5.49935 5.55507 5.60099 5.64144 5.65885 5.70577 5.81141 5.86316 6.18443 6.20075 6.64181 6.87171 7.37709 7.40052 8.95152 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.002340 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.338715 B =11963.388704 C =12008.456417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.154 4.154 4 C -0.075 4.075 5 H 0.086 0.914 6 C 0.117 3.883 7 N -0.716 5.716 8 C 0.508 3.492 9 O -0.591 6.591 10 C -0.121 4.121 11 C 0.043 3.957 12 C -0.541 4.541 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.938 5.938 16 Si 0.974 3.026 17 H -0.253 1.253 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.074 4.074 21 C -0.080 4.080 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.124 4.124 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.415 0.585 37 H 0.102 0.898 38 H 0.102 0.898 39 H -0.019 1.019 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.879 -15.085 -22.503 31.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.103 4.103 3 C -0.211 4.211 4 C -0.094 4.094 5 H 0.104 0.896 6 C -0.006 4.006 7 N -0.372 5.372 8 C 0.296 3.704 9 O -0.471 6.471 10 C -0.161 4.161 11 C 0.005 3.995 12 C -0.579 4.579 13 H 0.094 0.906 14 C -0.206 4.206 15 N -0.578 5.578 16 Si 0.798 3.202 17 H -0.176 1.176 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.112 4.112 21 C -0.080 4.080 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.256 0.744 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.000 1.000 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.153 0.847 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.375 -14.508 -21.874 30.937 hybrid contribution -0.874 0.268 0.479 1.032 sum 15.501 -14.240 -21.395 30.014 Atomic orbital electron populations 1.22252 0.95626 1.02244 1.02467 1.21104 0.95552 0.95998 0.97639 1.21997 1.01509 0.96219 1.01375 1.21339 0.95904 0.99070 0.93047 0.89591 1.21540 0.80313 1.00986 0.97804 1.46377 1.08572 1.47531 1.34761 1.21304 0.91580 0.78296 0.79231 1.90647 1.65550 1.43997 1.46922 1.21646 0.89974 1.02898 1.01566 1.18681 0.95161 0.93273 0.92385 1.21747 0.92927 1.26864 1.16379 0.90612 1.26156 1.04064 0.94881 0.95496 1.70192 1.37633 1.29522 1.20447 0.85264 0.78449 0.78155 0.78313 1.17591 1.20618 1.20632 1.20591 0.94388 0.99556 0.96662 1.19858 0.98961 0.94046 0.95168 1.21263 1.00596 0.93232 0.99681 1.21401 0.99300 1.00604 0.93270 1.21426 1.00262 0.95574 0.98043 1.21414 0.99787 0.93971 0.99419 1.21260 0.99786 1.00409 0.92774 0.92525 0.92086 0.91412 0.89891 0.91572 0.92451 0.93958 0.91900 0.92885 0.74420 0.87945 0.87935 1.00012 0.99996 0.92880 0.90146 0.90322 0.85478 0.84810 0.84695 0.84728 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 7.62 71.98 0.55 -2.24 16 2 C -0.08 -1.33 2.51 -10.79 -0.03 -1.36 16 3 C -0.15 -2.69 8.47 71.98 0.61 -2.08 16 4 C -0.07 -1.22 1.84 -10.79 -0.02 -1.24 16 5 H 0.09 1.30 8.06 -2.39 -0.02 1.28 16 6 C 0.12 2.80 4.74 86.38 0.41 3.20 16 7 N -0.72 -19.43 3.83 -463.07 -1.77 -21.20 16 8 C 0.51 19.91 7.83 87.66 0.69 20.59 16 9 O -0.59 -29.50 15.97 -3.02 -0.05 -29.54 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.04 2.41 4.26 29.85 0.13 2.54 16 12 C -0.54 -31.15 9.11 25.60 0.23 -30.91 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 14 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 15 N -0.94 -60.11 13.29 21.45 0.28 -59.83 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 17 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.07 -1.09 4.71 29.85 0.14 -0.95 16 21 C -0.08 -1.18 4.51 -19.86 -0.09 -1.27 16 22 C -0.13 -1.86 9.73 22.27 0.22 -1.65 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.14 -1.68 10.05 22.27 0.22 -1.46 16 25 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 26 C -0.12 -1.72 8.30 22.27 0.18 -1.54 16 27 H 0.06 1.16 5.85 -2.39 -0.01 1.14 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.94 7.51 -2.38 -0.02 0.92 16 30 H 0.08 1.23 6.19 -2.38 -0.01 1.21 16 31 H 0.07 0.98 6.48 -2.39 -0.02 0.96 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 0.95 5.93 -2.38 -0.01 0.93 16 34 H 0.06 1.70 5.81 -2.39 -0.01 1.69 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.42 8.72 5.62 -92.70 -0.52 8.20 16 37 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 39 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 40 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 41 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 42 H 0.08 1.15 6.41 -2.39 -0.02 1.13 16 43 H 0.08 1.13 8.13 -2.39 -0.02 1.11 16 44 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.13 1.27 8.06 -2.92 -0.02 1.25 16 46 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.13 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.13 1.51 7.83 -2.91 -0.02 1.49 16 Total: -1.00 -76.72 377.80 5.22 -71.49 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.41 Total: 18.41 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.32 Total: -26.03 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.49 Total: -81.02 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.72 5.22 -71.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.276 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds