Wall clock time and date at job start Tue Mar 31 2020 08:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46837 * 2 1 4 4 C 1.53003 * 109.47063 * 119.99437 * 2 1 3 5 5 H 1.08997 * 109.46798 * 184.80377 * 4 2 1 6 6 C 1.52994 * 109.47226 * 304.81207 * 4 2 1 7 7 N 1.46505 * 109.47014 * 293.23102 * 6 4 2 8 8 C 1.34772 * 119.99989 * 173.79296 * 7 6 4 9 9 O 1.21280 * 120.00175 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.52994 * 109.47184 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47257 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00006 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00483 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99483 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00380 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47255 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47426 * 119.99890 * 16 14 12 19 19 H 1.48502 * 109.47201 * 239.99815 * 16 14 12 20 20 C 1.52999 * 109.46777 * 64.80954 * 4 2 1 21 21 C 1.50699 * 109.47294 * 59.35547 * 20 4 2 22 22 C 1.38236 * 120.00472 * 263.51101 * 21 20 4 23 23 C 1.38228 * 120.00087 * 179.76540 * 22 21 20 24 24 C 1.38232 * 120.00172 * 0.50689 * 23 22 21 25 25 C 1.38234 * 120.00039 * 359.74781 * 24 23 22 26 26 C 1.38238 * 119.99965 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.47125 * 186.93237 * 1 2 3 28 28 H 1.09002 * 109.47763 * 306.93768 * 1 2 3 29 29 H 1.09003 * 109.46932 * 66.94153 * 1 2 3 30 30 H 1.08999 * 109.47610 * 239.99695 * 2 1 3 31 31 H 1.09008 * 109.47228 * 172.36316 * 3 2 1 32 32 H 1.08998 * 109.47299 * 292.35711 * 3 2 1 33 33 H 1.08994 * 109.47232 * 52.35933 * 3 2 1 34 34 H 1.08998 * 109.47562 * 53.23071 * 6 4 2 35 35 H 1.09005 * 109.47023 * 173.23449 * 6 4 2 36 36 H 0.96998 * 119.99718 * 353.79187 * 7 6 4 37 37 H 1.09004 * 109.46865 * 300.00214 * 10 8 7 38 38 H 1.09001 * 109.46888 * 60.00051 * 10 8 7 39 39 H 1.09004 * 109.47212 * 299.99779 * 11 10 8 40 40 H 1.08997 * 109.47450 * 59.99628 * 11 10 8 41 41 H 0.97002 * 119.99526 * 180.02562 * 15 14 12 42 42 H 1.09003 * 109.47562 * 299.35942 * 20 4 2 43 43 H 1.08997 * 109.46997 * 179.35515 * 20 4 2 44 44 H 1.08000 * 119.99598 * 359.97438 * 22 21 20 45 45 H 1.08004 * 119.99772 * 180.23042 * 23 22 21 46 46 H 1.08002 * 119.99921 * 179.72527 * 24 23 22 47 47 H 1.08002 * 119.99974 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.99852 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1265 -0.6472 1.2934 6 6 1.4336 -0.0731 2.4955 7 7 1.9536 1.2890 2.6398 8 6 1.4636 2.0993 3.5987 9 8 0.5926 1.7009 4.3426 10 6 1.9981 3.5006 3.7467 11 6 1.2785 4.2017 4.9006 12 6 1.8126 5.6032 5.0481 13 1 2.5880 5.9582 4.3855 14 6 1.3120 6.4319 6.0298 15 7 0.3680 5.9995 6.8371 16 14 1.9744 8.1688 6.2132 17 1 3.0232 8.4092 5.1897 18 1 0.8689 9.1426 6.0265 19 1 2.5574 8.3357 7.5687 20 6 1.6311 -2.1943 1.1904 21 6 2.2152 -2.8287 -0.0454 22 6 1.4506 -2.9425 -1.1914 23 6 1.9881 -3.5200 -2.3264 24 6 3.2867 -3.9934 -2.3124 25 6 4.0497 -3.8845 -1.1648 26 6 3.5141 -3.3017 -0.0314 27 1 -0.3634 -1.0202 0.1240 28 1 -0.3635 0.6176 0.8214 29 1 -0.3633 0.4025 -0.9456 30 1 1.8934 -0.5139 -0.8899 31 1 3.1214 1.4456 0.1366 32 1 1.7925 1.9154 -0.9504 33 1 1.5693 1.9942 0.8137 34 1 0.3487 -0.0391 2.3961 35 1 1.6997 -0.6586 3.3756 36 1 2.6505 1.6075 2.0450 37 1 3.0672 3.4615 3.9559 38 1 1.8286 4.0535 2.8228 39 1 0.2094 4.2408 4.6918 40 1 1.4483 3.6486 5.8243 41 1 0.0156 6.5827 7.5275 42 1 0.5441 -2.2687 1.1577 43 1 2.0042 -2.7106 2.0749 44 1 0.4344 -2.5770 -1.2010 45 1 1.3919 -3.6055 -3.2229 46 1 3.7052 -4.4487 -3.1978 47 1 5.0642 -4.2547 -1.1537 48 1 4.1101 -3.2170 0.8653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291901974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:32 Heat of formation + Delta-G solvation = -37.687055 kcal Electronic energy + Delta-G solvation = -24510.408934 eV Core-core repulsion = 21143.225694 eV Total energy + Delta-G solvation = -3367.183240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24293 -39.19572 -37.58082 -33.72231 -33.41898 -32.70457 -31.17551 -31.01770 -29.74829 -27.36546 -26.56228 -25.07528 -23.17691 -22.83839 -21.68404 -21.25261 -19.99860 -18.77134 -17.05207 -16.78342 -16.37488 -15.73308 -15.55312 -15.40026 -15.12347 -14.58539 -14.43249 -14.37053 -13.82217 -13.69251 -13.45634 -13.05005 -12.98679 -12.72665 -12.38952 -12.31047 -12.14086 -12.06538 -11.83795 -11.57362 -11.30469 -11.21961 -11.12237 -10.93260 -10.81610 -10.58940 -10.56549 -10.40871 -9.93057 -9.63454 -9.18356 -9.14031 -9.00881 -8.87366 -8.57476 -8.30054 -5.94349 -3.98461 1.08087 1.12567 3.32045 3.33680 3.40412 3.43591 3.46498 3.68888 4.38932 4.46586 4.49240 4.64422 4.71529 4.75453 4.77587 4.87838 5.10548 5.18860 5.23967 5.29586 5.33620 5.40587 5.42856 5.50482 5.55033 5.58238 5.68839 5.73151 5.77354 5.84337 5.85727 5.93725 6.00641 6.10207 6.18747 6.22633 6.25111 6.26452 6.27976 6.34267 6.39865 6.73332 6.81153 6.93355 7.77055 7.89349 7.95181 8.09755 8.41344 8.84913 9.10667 9.64927 11.16642 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.002342 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.460082 B =11952.350241 C =12028.739268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.171 4.171 4 C -0.089 4.089 5 H 0.077 0.923 6 C 0.120 3.880 7 N -0.744 5.744 8 C 0.506 3.494 9 O -0.536 6.536 10 C -0.131 4.131 11 C 0.037 3.963 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.079 4.079 21 C -0.071 4.071 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.400 0.600 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -20.585 -20.039 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.228 4.228 4 C -0.107 4.107 5 H 0.095 0.905 6 C -0.004 4.004 7 N -0.402 5.402 8 C 0.294 3.706 9 O -0.412 6.412 10 C -0.171 4.171 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.116 4.116 21 C -0.072 4.072 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.040 -20.811 -19.328 28.846 hybrid contribution 0.734 1.038 -0.224 1.291 sum 5.775 -19.773 -19.552 28.401 Atomic orbital electron populations 1.21994 0.95222 1.01781 1.02068 1.21137 0.96088 0.96077 0.97490 1.22336 1.00777 0.96606 1.03083 1.21427 1.00669 0.93771 0.94862 0.90513 1.21346 0.99451 0.83242 0.96331 1.46709 1.42751 1.14062 1.36633 1.21553 0.81888 0.88313 0.78847 1.90663 1.30945 1.76438 1.43116 1.21868 1.01565 0.90208 1.03457 1.18892 0.95770 0.93837 0.91558 1.21271 1.21153 0.97963 1.15996 0.92580 1.25036 0.95102 0.98505 0.95842 1.70017 1.27417 1.36180 1.19227 0.86538 0.78796 0.84738 0.77897 1.19767 1.21039 1.21034 1.20652 1.01378 0.94300 0.95301 1.19844 0.94158 0.97706 0.95448 1.21116 0.99977 0.99470 0.92741 1.21146 0.95654 0.98746 0.98256 1.21130 0.94674 1.00612 0.98201 1.21141 0.99778 0.99508 0.93285 1.21074 0.95113 0.98885 0.98526 0.92568 0.91883 0.92904 0.90853 0.92765 0.92764 0.90227 0.90926 0.92320 0.76186 0.90376 0.90371 0.95845 0.95854 0.93039 0.90267 0.90518 0.86027 0.86273 0.86391 0.86264 0.86119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.35 37.16 0.31 -1.11 16 2 C -0.09 -0.79 2.36 -90.62 -0.21 -1.01 16 3 C -0.17 -1.62 7.60 37.16 0.28 -1.33 16 4 C -0.09 -0.79 1.93 -90.62 -0.17 -0.97 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C 0.12 1.46 4.76 -4.04 -0.02 1.44 16 7 N -0.74 -10.35 3.67 -60.29 -0.22 -10.57 16 8 C 0.51 9.76 7.83 -10.99 -0.09 9.67 16 9 O -0.54 -12.75 15.97 5.56 0.09 -12.66 16 10 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 11 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 12 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.08 -0.63 4.64 -27.88 -0.13 -0.76 16 21 C -0.07 -0.58 4.33 -104.62 -0.45 -1.04 16 22 C -0.12 -0.91 8.28 -39.59 -0.33 -1.24 16 23 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 24 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.94 9.73 -39.58 -0.38 -1.33 16 27 H 0.06 0.45 5.51 -51.93 -0.29 0.17 16 28 H 0.06 0.71 6.59 -51.93 -0.34 0.36 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.65 6.15 -51.93 -0.32 0.33 16 31 H 0.05 0.46 7.68 -51.92 -0.40 0.06 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.89 5.51 -51.93 -0.29 0.60 16 34 H 0.07 0.97 6.10 -51.93 -0.32 0.65 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.59 5.64 -40.82 -0.23 4.36 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.08 0.62 6.35 -51.93 -0.33 0.29 16 43 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.12 0.85 7.26 -52.49 -0.38 0.47 16 45 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 48 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -34.00 376.43 -9.74 -43.74 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.92 Total: 1.25 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -3.08 Total: -17.32 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.52 Total: -37.48 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -9.74 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.054 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds