Wall clock time and date at job start Tue Mar 31 2020 08:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46837 * 2 1 4 4 C 1.53003 * 109.47063 * 119.99437 * 2 1 3 5 5 H 1.08997 * 109.46798 * 184.80377 * 4 2 1 6 6 C 1.52994 * 109.47226 * 304.81207 * 4 2 1 7 7 N 1.46505 * 109.47014 * 293.23102 * 6 4 2 8 8 C 1.34772 * 119.99989 * 173.79296 * 7 6 4 9 9 O 1.21280 * 120.00175 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.52994 * 109.47184 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47257 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00006 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00483 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99483 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00380 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47255 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47426 * 119.99890 * 16 14 12 19 19 H 1.48502 * 109.47201 * 239.99815 * 16 14 12 20 20 C 1.52999 * 109.46777 * 64.80954 * 4 2 1 21 21 C 1.50699 * 109.47294 * 59.35547 * 20 4 2 22 22 C 1.38236 * 120.00472 * 263.51101 * 21 20 4 23 23 C 1.38228 * 120.00087 * 179.76540 * 22 21 20 24 24 C 1.38232 * 120.00172 * 0.50689 * 23 22 21 25 25 C 1.38234 * 120.00039 * 359.74781 * 24 23 22 26 26 C 1.38238 * 119.99965 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.47125 * 186.93237 * 1 2 3 28 28 H 1.09002 * 109.47763 * 306.93768 * 1 2 3 29 29 H 1.09003 * 109.46932 * 66.94153 * 1 2 3 30 30 H 1.08999 * 109.47610 * 239.99695 * 2 1 3 31 31 H 1.09008 * 109.47228 * 172.36316 * 3 2 1 32 32 H 1.08998 * 109.47299 * 292.35711 * 3 2 1 33 33 H 1.08994 * 109.47232 * 52.35933 * 3 2 1 34 34 H 1.08998 * 109.47562 * 53.23071 * 6 4 2 35 35 H 1.09005 * 109.47023 * 173.23449 * 6 4 2 36 36 H 0.96998 * 119.99718 * 353.79187 * 7 6 4 37 37 H 1.09004 * 109.46865 * 300.00214 * 10 8 7 38 38 H 1.09001 * 109.46888 * 60.00051 * 10 8 7 39 39 H 1.09004 * 109.47212 * 299.99779 * 11 10 8 40 40 H 1.08997 * 109.47450 * 59.99628 * 11 10 8 41 41 H 0.97002 * 119.99526 * 180.02562 * 15 14 12 42 42 H 1.09003 * 109.47562 * 299.35942 * 20 4 2 43 43 H 1.08997 * 109.46997 * 179.35515 * 20 4 2 44 44 H 1.08000 * 119.99598 * 359.97438 * 22 21 20 45 45 H 1.08004 * 119.99772 * 180.23042 * 23 22 21 46 46 H 1.08002 * 119.99921 * 179.72527 * 24 23 22 47 47 H 1.08002 * 119.99974 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.99852 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1265 -0.6472 1.2934 6 6 1.4336 -0.0731 2.4955 7 7 1.9536 1.2890 2.6398 8 6 1.4636 2.0993 3.5987 9 8 0.5926 1.7009 4.3426 10 6 1.9981 3.5006 3.7467 11 6 1.2785 4.2017 4.9006 12 6 1.8126 5.6032 5.0481 13 1 2.5880 5.9582 4.3855 14 6 1.3120 6.4319 6.0298 15 7 0.3680 5.9995 6.8371 16 14 1.9744 8.1688 6.2132 17 1 3.0232 8.4092 5.1897 18 1 0.8689 9.1426 6.0265 19 1 2.5574 8.3357 7.5687 20 6 1.6311 -2.1943 1.1904 21 6 2.2152 -2.8287 -0.0454 22 6 1.4506 -2.9425 -1.1914 23 6 1.9881 -3.5200 -2.3264 24 6 3.2867 -3.9934 -2.3124 25 6 4.0497 -3.8845 -1.1648 26 6 3.5141 -3.3017 -0.0314 27 1 -0.3634 -1.0202 0.1240 28 1 -0.3635 0.6176 0.8214 29 1 -0.3633 0.4025 -0.9456 30 1 1.8934 -0.5139 -0.8899 31 1 3.1214 1.4456 0.1366 32 1 1.7925 1.9154 -0.9504 33 1 1.5693 1.9942 0.8137 34 1 0.3487 -0.0391 2.3961 35 1 1.6997 -0.6586 3.3756 36 1 2.6505 1.6075 2.0450 37 1 3.0672 3.4615 3.9559 38 1 1.8286 4.0535 2.8228 39 1 0.2094 4.2408 4.6918 40 1 1.4483 3.6486 5.8243 41 1 0.0156 6.5827 7.5275 42 1 0.5441 -2.2687 1.1577 43 1 2.0042 -2.7106 2.0749 44 1 0.4344 -2.5770 -1.2010 45 1 1.3919 -3.6055 -3.2229 46 1 3.7052 -4.4487 -3.1978 47 1 5.0642 -4.2547 -1.1537 48 1 4.1101 -3.2170 0.8653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291901974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:31 Heat of formation + Delta-G solvation = -56.273045 kcal Electronic energy + Delta-G solvation = -24511.214883 eV Core-core repulsion = 21143.225694 eV Total energy + Delta-G solvation = -3367.989189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19254 -40.25101 -38.57373 -35.56907 -34.89774 -33.42124 -32.98421 -31.70119 -30.64599 -28.22919 -27.99839 -26.46259 -24.20388 -23.40049 -23.18181 -22.11050 -21.35979 -19.82356 -18.71898 -17.65172 -17.42514 -17.18993 -16.80666 -16.40942 -16.19161 -15.95312 -15.80305 -15.14499 -14.79069 -14.57000 -14.32890 -14.20865 -14.15152 -13.99947 -13.60014 -13.35308 -13.20911 -13.06342 -12.93394 -12.81994 -12.77416 -12.44107 -12.37891 -11.92097 -11.86777 -11.83157 -11.63503 -11.54113 -11.32139 -11.27602 -11.24388 -10.67648 -10.57392 -9.85484 -9.72930 -9.49629 -8.17740 -6.31640 0.51964 0.57633 1.42216 1.43709 1.57030 1.75853 2.30870 2.46363 2.96115 3.15181 3.64165 3.75563 3.94172 4.07586 4.10939 4.15757 4.23138 4.34373 4.41949 4.46071 4.52558 4.53772 4.54469 4.58895 4.67103 4.72728 4.80581 4.84435 4.88234 5.00313 5.07048 5.07832 5.11383 5.16590 5.24212 5.27731 5.34726 5.44432 5.49977 5.54487 5.59580 5.64175 5.66234 5.71006 5.81499 5.86348 6.18446 6.20369 6.63915 6.87203 7.37641 7.39947 8.95159 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.002342 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.460082 B =11952.350241 C =12028.739268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C -0.173 4.173 4 C -0.075 4.075 5 H 0.087 0.913 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.507 3.493 9 O -0.591 6.591 10 C -0.121 4.121 11 C 0.043 3.957 12 C -0.541 4.541 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.938 5.938 16 Si 0.975 3.025 17 H -0.253 1.253 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.075 4.075 21 C -0.080 4.080 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.128 4.128 26 C -0.129 4.129 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.416 0.584 37 H 0.103 0.897 38 H 0.102 0.898 39 H -0.019 1.019 40 H -0.018 1.018 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -20.540 -22.348 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.230 4.230 4 C -0.094 4.094 5 H 0.105 0.895 6 C -0.005 4.005 7 N -0.373 5.373 8 C 0.295 3.705 9 O -0.471 6.471 10 C -0.161 4.161 11 C 0.005 3.995 12 C -0.579 4.579 13 H 0.094 0.906 14 C -0.206 4.206 15 N -0.578 5.578 16 Si 0.798 3.202 17 H -0.176 1.176 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.112 4.112 21 C -0.080 4.080 22 C -0.142 4.142 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.147 4.147 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.000 1.000 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.271 -20.788 -21.702 30.919 hybrid contribution 0.038 0.930 0.436 1.028 sum 7.309 -19.858 -21.266 30.000 Atomic orbital electron populations 1.21975 0.95645 1.01966 1.01342 1.21101 0.95659 0.95857 0.97614 1.22335 1.01524 0.96569 1.02579 1.21333 1.00896 0.94161 0.93001 0.89477 1.21485 0.99047 0.81983 0.97946 1.46445 1.41924 1.14178 1.34707 1.21308 0.81389 0.88450 0.79304 1.90649 1.33536 1.77326 1.45598 1.21647 1.01964 0.90790 1.01685 1.18678 0.94139 0.94258 0.92429 1.21751 1.21418 0.98471 1.16276 0.90609 1.26159 0.95229 1.03854 0.95373 1.70193 1.29165 1.38290 1.20145 0.85261 0.78449 0.78116 0.78336 1.17590 1.20638 1.20620 1.20596 1.01460 0.93435 0.95739 1.19842 0.94435 0.98302 0.95381 1.21266 1.00330 0.99724 0.92906 1.21404 0.96038 0.98484 0.98720 1.21420 0.94701 1.00338 0.98841 1.21402 1.00632 0.99325 0.93207 1.21263 0.95228 0.99064 0.99141 0.91560 0.94302 0.92327 0.89982 0.91324 0.92255 0.92187 0.92159 0.92808 0.74286 0.87913 0.87943 1.00008 1.00003 0.92883 0.90252 0.90163 0.85491 0.84812 0.84722 0.84778 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.35 71.98 0.60 -2.07 16 2 C -0.08 -1.34 2.36 -10.79 -0.03 -1.36 16 3 C -0.17 -2.91 7.60 71.98 0.55 -2.36 16 4 C -0.08 -1.22 1.93 -10.79 -0.02 -1.24 16 5 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 6 C 0.12 2.83 4.76 86.38 0.41 3.24 16 7 N -0.72 -19.37 3.67 -463.06 -1.70 -21.07 16 8 C 0.51 19.86 7.83 87.66 0.69 20.55 16 9 O -0.59 -29.48 15.97 -3.03 -0.05 -29.53 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.04 2.41 4.26 29.85 0.13 2.54 16 12 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 14 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 15 N -0.94 -60.11 13.29 21.45 0.28 -59.82 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 17 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C -0.07 -1.09 4.64 29.85 0.14 -0.95 16 21 C -0.08 -1.16 4.33 -19.86 -0.09 -1.24 16 22 C -0.12 -1.74 8.28 22.27 0.18 -1.56 16 23 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 24 C -0.14 -1.68 10.05 22.27 0.22 -1.46 16 25 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 26 C -0.13 -1.82 9.73 22.27 0.22 -1.60 16 27 H 0.07 1.01 5.51 -2.38 -0.01 1.00 16 28 H 0.04 0.87 6.59 -2.39 -0.02 0.86 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.25 6.15 -2.39 -0.01 1.23 16 31 H 0.07 0.96 7.68 -2.38 -0.02 0.94 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.25 5.51 -2.39 -0.01 1.24 16 34 H 0.06 1.64 6.10 -2.39 -0.01 1.62 16 35 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.42 8.69 5.64 -92.71 -0.52 8.17 16 37 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 39 H -0.02 -1.19 8.10 -2.39 -0.02 -1.20 16 40 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.08 1.15 6.35 -2.39 -0.02 1.13 16 43 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 44 H 0.13 1.56 7.26 -2.91 -0.02 1.54 16 45 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 46 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -76.72 376.43 5.29 -71.43 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.41 Total: 18.39 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.31 Total: -26.10 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.41 Total: -80.89 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.72 5.29 -71.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.155 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds