Wall clock time and date at job start Tue Mar 31 2020 08:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00082 * 4 3 2 6 6 C 1.52994 * 109.47404 * 175.00005 * 4 3 2 7 7 C 1.53003 * 109.47265 * 184.99783 * 6 4 3 8 8 C 1.50706 * 109.47140 * 180.02562 * 7 6 4 9 9 C 1.38232 * 119.99886 * 269.73169 * 8 7 6 10 10 C 1.38239 * 119.99924 * 179.76687 * 9 8 7 11 11 C 1.38230 * 119.99724 * 0.50219 * 10 9 8 12 12 C 1.38232 * 120.00321 * 359.75169 * 11 10 9 13 13 C 1.38230 * 119.99898 * 90.00077 * 8 7 6 14 14 N 1.46504 * 109.47349 * 295.00344 * 4 3 2 15 15 C 1.34776 * 120.00216 * 84.99451 * 14 4 3 16 16 O 1.21283 * 119.99606 * 0.02562 * 15 14 4 17 17 C 1.50695 * 120.00388 * 180.02562 * 15 14 4 18 18 C 1.53002 * 109.47604 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47074 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00123 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99515 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99750 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00173 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47542 * 89.99617 * 23 21 19 25 25 H 1.48509 * 109.47048 * 209.99617 * 23 21 19 26 26 H 1.48501 * 109.47303 * 329.99607 * 23 21 19 27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.09001 * 109.47698 * 305.00111 * 6 4 3 35 35 H 1.09009 * 109.47010 * 65.00116 * 6 4 3 36 36 H 1.08992 * 109.47227 * 299.99948 * 7 6 4 37 37 H 1.09000 * 109.46720 * 60.00379 * 7 6 4 38 38 H 1.07997 * 120.00146 * 359.97438 * 9 8 7 39 39 H 1.07999 * 120.00023 * 180.22980 * 10 9 8 40 40 H 1.08004 * 120.00125 * 179.72307 * 11 10 9 41 41 H 1.08008 * 120.00616 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.00146 * 0.02562 * 13 8 7 43 43 H 0.97001 * 119.99585 * 265.00132 * 14 4 3 44 44 H 1.08999 * 109.47402 * 300.00593 * 17 15 14 45 45 H 1.09001 * 109.46870 * 60.00274 * 17 15 14 46 46 H 1.09000 * 109.46712 * 300.00329 * 18 17 15 47 47 H 1.09004 * 109.46588 * 59.99728 * 18 17 15 48 48 H 0.97000 * 120.00091 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0799 2.8795 -0.1264 7 6 5.6047 2.8704 -0.2524 8 6 6.1070 4.2859 -0.3756 9 6 6.2438 4.8646 -1.6234 10 6 6.7001 6.1647 -1.7362 11 6 7.0293 6.8824 -0.6016 12 6 6.8974 6.3020 0.6460 13 6 6.4362 5.0037 0.7590 14 7 4.0589 0.8586 1.2508 15 6 4.1876 -0.4781 1.3657 16 8 3.8991 -1.1974 0.4329 17 6 4.6900 -1.0788 2.6532 18 6 4.7421 -2.6021 2.5192 19 6 5.2451 -3.2027 3.8065 20 1 5.5015 -2.5621 4.6373 21 6 5.3769 -4.5702 3.9239 22 7 5.8163 -5.0943 5.0472 23 14 4.9326 -5.6781 2.4872 24 1 6.1298 -5.8856 1.6333 25 1 4.4578 -6.9882 3.0007 26 1 3.8571 -5.0415 1.6852 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.6449 3.3434 -1.0117 35 1 3.7919 3.4461 0.7593 36 1 6.0396 2.4067 0.6329 37 1 5.8926 2.3040 -1.1379 38 1 5.9912 4.3022 -2.5101 39 1 6.8034 6.6180 -2.7110 40 1 7.3900 7.8966 -0.6899 41 1 7.1551 6.8626 1.5325 42 1 6.3339 4.5499 1.7337 43 1 4.2898 1.4340 1.9968 44 1 5.6892 -0.6988 2.8660 45 1 4.0174 -0.8082 3.4672 46 1 3.7430 -2.9824 2.3062 47 1 5.4149 -2.8723 1.7052 48 1 5.9087 -6.0563 5.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292076914.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:26 Heat of formation + Delta-G solvation = -52.337273 kcal Electronic energy + Delta-G solvation = -24273.203514 eV Core-core repulsion = 20905.384993 eV Total energy + Delta-G solvation = -3367.818521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.91338 -39.34777 -36.66703 -34.17960 -33.43081 -33.05232 -31.32794 -31.13580 -30.32151 -27.96921 -26.02987 -24.58307 -22.82406 -22.05163 -21.47495 -20.74566 -20.52117 -19.65004 -17.19351 -17.02673 -16.43234 -15.87519 -15.53144 -15.38537 -15.23030 -14.39658 -14.13220 -14.04090 -13.79786 -13.69053 -13.48280 -13.19428 -12.99996 -12.94639 -12.54910 -12.40874 -12.26272 -12.00441 -11.58022 -11.43169 -11.38870 -11.26690 -11.10138 -10.98648 -10.92309 -10.53330 -10.40769 -10.10915 -10.01334 -9.76039 -9.18733 -9.17506 -9.10691 -8.97446 -8.70175 -8.49294 -6.01813 -4.00296 1.10511 1.14627 3.18712 3.38695 3.45180 3.52209 3.53171 3.56201 4.35470 4.51997 4.57875 4.71225 4.80602 4.86312 4.90986 4.95645 5.13237 5.25836 5.26661 5.30238 5.33322 5.33845 5.44684 5.49710 5.56370 5.63565 5.73483 5.78418 5.80086 5.84125 5.96525 5.98806 6.07369 6.12261 6.13819 6.21728 6.22792 6.26065 6.40063 6.41340 6.62716 6.72299 6.76079 6.77902 7.38822 7.46066 7.79628 7.86526 8.52172 8.73220 9.01715 9.61437 11.11112 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003017 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.882987 B = 9279.898445 C =10643.852739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.127 4.127 4 C 0.143 3.857 5 H 0.086 0.914 6 C -0.117 4.117 7 C -0.083 4.083 8 C -0.077 4.077 9 C -0.119 4.119 10 C -0.120 4.120 11 C -0.129 4.129 12 C -0.119 4.119 13 C -0.117 4.117 14 N -0.735 5.735 15 C 0.510 3.490 16 O -0.535 6.535 17 C -0.124 4.124 18 C 0.003 3.997 19 C -0.524 4.524 20 H 0.072 0.928 21 C 0.068 3.932 22 N -0.904 5.904 23 Si 0.877 3.123 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.261 1.261 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.396 0.604 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 24.696 -12.322 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.166 4.166 4 C 0.038 3.962 5 H 0.104 0.896 6 C -0.155 4.155 7 C -0.121 4.121 8 C -0.077 4.077 9 C -0.137 4.137 10 C -0.138 4.138 11 C -0.147 4.147 12 C -0.137 4.137 13 C -0.135 4.135 14 N -0.389 5.389 15 C 0.299 3.701 16 O -0.411 6.411 17 C -0.164 4.164 18 C -0.035 4.035 19 C -0.562 4.562 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.543 5.543 23 Si 0.705 3.295 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.185 1.185 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.230 0.770 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.197 23.982 -12.924 27.430 hybrid contribution -0.022 -0.263 -0.249 0.363 sum -3.220 23.719 -13.173 27.322 Atomic orbital electron populations 1.21798 0.96798 1.01398 1.00860 1.21595 0.94512 0.95982 1.03755 1.22028 0.94974 0.97886 1.01678 1.20981 0.93462 0.93243 0.88517 0.89555 1.21848 0.94717 0.95983 1.02980 1.20653 0.95504 0.92279 1.03631 1.19972 0.98269 0.96277 0.93173 1.21087 1.00118 0.95357 0.97136 1.21145 0.99412 0.94695 0.98528 1.21137 1.00855 0.99928 0.92785 1.21167 0.99551 0.95401 0.97551 1.21111 0.99481 0.94580 0.98352 1.46242 1.69022 1.07602 1.16049 1.21417 0.76415 0.81347 0.90955 1.90657 1.49042 1.60342 1.41050 1.21668 1.01555 1.00151 0.92995 1.19345 0.97648 0.89050 0.97437 1.21127 1.44024 0.92449 0.98613 0.91010 1.24977 0.94451 0.98183 0.95675 1.69914 1.46858 1.11924 1.25626 0.86794 0.79778 0.79850 0.83111 1.20284 1.21504 1.18505 0.93402 0.92913 0.93268 0.91604 0.91117 0.91742 0.92080 0.90588 0.91278 0.90398 0.90786 0.86136 0.86254 0.86338 0.86152 0.85953 0.77007 0.89838 0.89827 0.95892 0.96341 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.66 4.54 -26.73 -0.12 -1.78 16 3 C -0.13 -1.37 4.89 -26.73 -0.13 -1.50 16 4 C 0.14 1.56 2.26 -67.93 -0.15 1.40 16 5 H 0.09 1.12 7.58 -51.92 -0.39 0.73 16 6 C -0.12 -0.97 4.74 -26.73 -0.13 -1.10 16 7 C -0.08 -0.73 5.23 -27.88 -0.15 -0.88 16 8 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 9 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 10 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 11 C -0.13 -1.01 10.05 -39.59 -0.40 -1.41 16 12 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 13 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 14 N -0.74 -9.03 4.48 -53.81 -0.24 -9.27 16 15 C 0.51 8.74 6.40 -10.99 -0.07 8.67 16 16 O -0.53 -11.02 13.12 5.55 0.07 -10.95 16 17 C -0.12 -2.35 5.64 -27.88 -0.16 -2.50 16 18 C 0.00 0.08 3.33 -27.88 -0.09 -0.02 16 19 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 20 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 23 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 31 H 0.07 1.17 5.65 -51.93 -0.29 0.88 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 37 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.40 3.88 8.60 -40.82 -0.35 3.52 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 47 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -33.30 386.52 -10.33 -43.63 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.53 Total: 0.81 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -3.56 Total: -20.69 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.53 Total: -36.62 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.30 -10.33 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292076914.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.711 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds