Wall clock time and date at job start Tue Mar 31 2020 08:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00082 * 4 3 2 6 6 C 1.52994 * 109.47404 * 175.00005 * 4 3 2 7 7 C 1.53003 * 109.47265 * 184.99783 * 6 4 3 8 8 C 1.50706 * 109.47140 * 180.02562 * 7 6 4 9 9 C 1.38232 * 119.99886 * 269.73169 * 8 7 6 10 10 C 1.38239 * 119.99924 * 179.76687 * 9 8 7 11 11 C 1.38230 * 119.99724 * 0.50219 * 10 9 8 12 12 C 1.38232 * 120.00321 * 359.75169 * 11 10 9 13 13 C 1.38230 * 119.99898 * 90.00077 * 8 7 6 14 14 N 1.46504 * 109.47349 * 295.00344 * 4 3 2 15 15 C 1.34776 * 120.00216 * 84.99451 * 14 4 3 16 16 O 1.21283 * 119.99606 * 0.02562 * 15 14 4 17 17 C 1.50695 * 120.00388 * 180.02562 * 15 14 4 18 18 C 1.53002 * 109.47604 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47074 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00123 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99515 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99750 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00173 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47542 * 89.99617 * 23 21 19 25 25 H 1.48509 * 109.47048 * 209.99617 * 23 21 19 26 26 H 1.48501 * 109.47303 * 329.99607 * 23 21 19 27 27 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.09001 * 109.47698 * 305.00111 * 6 4 3 35 35 H 1.09009 * 109.47010 * 65.00116 * 6 4 3 36 36 H 1.08992 * 109.47227 * 299.99948 * 7 6 4 37 37 H 1.09000 * 109.46720 * 60.00379 * 7 6 4 38 38 H 1.07997 * 120.00146 * 359.97438 * 9 8 7 39 39 H 1.07999 * 120.00023 * 180.22980 * 10 9 8 40 40 H 1.08004 * 120.00125 * 179.72307 * 11 10 9 41 41 H 1.08008 * 120.00616 * 179.97438 * 12 11 10 42 42 H 1.08000 * 120.00146 * 0.02562 * 13 8 7 43 43 H 0.97001 * 119.99585 * 265.00132 * 14 4 3 44 44 H 1.08999 * 109.47402 * 300.00593 * 17 15 14 45 45 H 1.09001 * 109.46870 * 60.00274 * 17 15 14 46 46 H 1.09000 * 109.46712 * 300.00329 * 18 17 15 47 47 H 1.09004 * 109.46588 * 59.99728 * 18 17 15 48 48 H 0.97000 * 120.00091 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0799 2.8795 -0.1264 7 6 5.6047 2.8704 -0.2524 8 6 6.1070 4.2859 -0.3756 9 6 6.2438 4.8646 -1.6234 10 6 6.7001 6.1647 -1.7362 11 6 7.0293 6.8824 -0.6016 12 6 6.8974 6.3020 0.6460 13 6 6.4362 5.0037 0.7590 14 7 4.0589 0.8586 1.2508 15 6 4.1876 -0.4781 1.3657 16 8 3.8991 -1.1974 0.4329 17 6 4.6900 -1.0788 2.6532 18 6 4.7421 -2.6021 2.5192 19 6 5.2451 -3.2027 3.8065 20 1 5.5015 -2.5621 4.6373 21 6 5.3769 -4.5702 3.9239 22 7 5.8163 -5.0943 5.0472 23 14 4.9326 -5.6781 2.4872 24 1 6.1298 -5.8856 1.6333 25 1 4.4578 -6.9882 3.0007 26 1 3.8571 -5.0415 1.6852 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.6449 3.3434 -1.0117 35 1 3.7919 3.4461 0.7593 36 1 6.0396 2.4067 0.6329 37 1 5.8926 2.3040 -1.1379 38 1 5.9912 4.3022 -2.5101 39 1 6.8034 6.6180 -2.7110 40 1 7.3900 7.8966 -0.6899 41 1 7.1551 6.8626 1.5325 42 1 6.3339 4.5499 1.7337 43 1 4.2898 1.4340 1.9968 44 1 5.6892 -0.6988 2.8660 45 1 4.0174 -0.8082 3.4672 46 1 3.7430 -2.9824 2.3062 47 1 5.4149 -2.8723 1.7052 48 1 5.9087 -6.0563 5.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292076914.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:23 Heat of formation + Delta-G solvation = -70.443174 kcal Electronic energy + Delta-G solvation = -24273.988645 eV Core-core repulsion = 20905.384993 eV Total energy + Delta-G solvation = -3368.603652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03891 -40.08525 -37.75364 -35.51417 -34.99653 -34.12207 -33.19827 -31.71385 -31.31817 -28.82147 -27.84141 -25.40915 -23.53357 -23.40350 -22.51435 -21.60988 -21.48377 -21.13535 -19.18370 -17.67124 -17.62432 -17.20331 -16.65673 -16.27809 -16.06865 -15.98931 -15.56492 -15.07231 -14.89243 -14.66834 -14.54726 -14.24018 -14.09450 -13.94727 -13.91193 -13.48414 -13.37403 -13.17341 -12.89203 -12.80555 -12.36255 -12.26409 -12.03994 -12.02578 -11.95444 -11.88637 -11.74804 -11.63107 -11.45713 -11.39261 -11.34489 -10.78201 -10.58254 -9.91434 -9.77137 -9.50726 -8.31751 -6.34220 0.50039 0.54961 1.32372 1.34241 1.49474 1.82174 2.34496 2.38152 2.92116 3.04115 3.58997 3.96310 4.00750 4.06212 4.13354 4.18414 4.22492 4.28533 4.34400 4.42416 4.43352 4.51783 4.52352 4.57315 4.70476 4.73918 4.80543 4.82505 4.88995 4.99487 5.02054 5.04343 5.14274 5.19871 5.25112 5.28311 5.33659 5.36252 5.38160 5.47254 5.55476 5.62330 5.63291 5.68075 5.71868 5.80023 6.18401 6.24113 6.71881 6.72537 7.31100 7.45735 8.84070 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003017 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.882987 B = 9279.898445 C =10643.852739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.144 3.856 5 H 0.065 0.935 6 C -0.103 4.103 7 C -0.080 4.080 8 C -0.088 4.088 9 C -0.132 4.132 10 C -0.128 4.128 11 C -0.136 4.136 12 C -0.128 4.128 13 C -0.130 4.130 14 N -0.713 5.713 15 C 0.516 3.484 16 O -0.574 6.574 17 C -0.119 4.119 18 C 0.008 3.992 19 C -0.528 4.528 20 H 0.049 0.951 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.938 3.062 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.262 1.262 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.412 0.588 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.008 0.992 47 H 0.007 0.993 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 27.056 -13.456 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.159 4.159 4 C 0.040 3.960 5 H 0.083 0.917 6 C -0.141 4.141 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.150 4.150 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.146 4.146 13 C -0.148 4.148 14 N -0.366 5.366 15 C 0.304 3.696 16 O -0.453 6.453 17 C -0.159 4.159 18 C -0.030 4.030 19 C -0.566 4.566 20 H 0.067 0.933 21 C -0.185 4.185 22 N -0.585 5.585 23 Si 0.763 3.237 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.186 1.186 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.248 0.752 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.831 26.397 -14.046 30.146 hybrid contribution 0.209 -0.909 0.142 0.944 sum -3.621 25.488 -13.904 29.259 Atomic orbital electron populations 1.21768 0.95298 1.01176 1.02247 1.21530 0.95882 0.97396 1.01039 1.21994 0.94411 0.96106 1.03401 1.21080 0.93842 0.94385 0.86693 0.91705 1.21748 0.94219 0.93891 1.04263 1.20588 0.95864 0.92322 1.02939 1.20015 0.98972 0.96209 0.93579 1.21292 1.00406 0.95902 0.97372 1.21428 0.99005 0.94591 0.99543 1.21449 1.00449 1.00868 0.92668 1.21444 0.99310 0.95427 0.98433 1.21309 0.99778 0.95042 0.98697 1.45990 1.67346 1.06025 1.17266 1.20949 0.76331 0.82756 0.89606 1.90652 1.51047 1.61655 1.41986 1.21491 1.03088 0.96535 0.94798 1.19179 0.95998 0.92948 0.94840 1.21457 1.43259 0.92448 0.99445 0.93296 1.25808 0.94636 0.99907 0.98125 1.70025 1.48368 1.12543 1.27560 0.85827 0.79650 0.78224 0.79988 1.19410 1.20413 1.18584 0.91508 0.94034 0.92293 0.93921 0.94333 0.89497 0.90731 0.89233 0.89876 0.91030 0.91614 0.85375 0.84559 0.84504 0.84626 0.85179 0.75151 0.88379 0.88520 0.97359 0.97429 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.91 71.98 0.71 -2.57 16 2 C -0.12 -3.24 4.54 30.59 0.14 -3.11 16 3 C -0.12 -2.33 4.89 30.59 0.15 -2.18 16 4 C 0.14 2.90 2.26 44.99 0.10 3.00 16 5 H 0.06 1.65 7.58 -2.38 -0.02 1.63 16 6 C -0.10 -1.44 4.74 30.59 0.14 -1.30 16 7 C -0.08 -1.28 5.23 29.85 0.16 -1.12 16 8 C -0.09 -1.44 5.13 -19.87 -0.10 -1.54 16 9 C -0.13 -2.05 9.70 22.27 0.22 -1.84 16 10 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 11 C -0.14 -1.85 10.05 22.27 0.22 -1.63 16 12 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 13 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 14 N -0.71 -16.45 4.48 -442.54 -1.98 -18.43 16 15 C 0.52 17.45 6.40 87.66 0.56 18.01 16 16 O -0.57 -23.97 13.12 -3.04 -0.04 -24.01 16 17 C -0.12 -4.48 5.64 29.85 0.17 -4.31 16 18 C 0.01 0.42 3.33 29.85 0.10 0.52 16 19 C -0.53 -30.72 9.66 25.60 0.25 -30.47 16 20 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 21 C 0.01 0.77 5.47 84.66 0.46 1.23 16 22 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 23 Si 0.94 47.31 27.47 68.60 1.88 49.19 16 24 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.26 -13.12 6.54 99.48 0.65 -12.47 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.32 7.85 -2.39 -0.02 1.30 16 31 H 0.04 1.28 5.65 -2.39 -0.01 1.26 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.22 7.69 -2.39 -0.02 1.20 16 37 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.41 7.08 8.60 -92.71 -0.80 6.28 16 44 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 45 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 47 H 0.01 0.38 7.53 -2.38 -0.02 0.36 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -73.20 386.52 4.16 -69.04 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.06 Total: 15.83 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 3.94 Total: -32.30 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.68 Total: -77.75 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.04 Total: -24.01 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.19 kcal Total: -73.20 4.16 -69.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292076914.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.402 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds