Wall clock time and date at job start Tue Mar 31 2020 07:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 N 1.46900 * 109.47552 * 270.27982 * 8 7 6 10 10 C 1.46902 * 110.99685 * 293.95602 * 9 8 7 11 11 C 1.50693 * 109.47535 * 69.99857 * 10 9 8 12 12 H 1.07999 * 120.00026 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00122 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99760 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99790 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47336 * 90.00282 * 15 13 11 17 17 H 1.48499 * 109.47094 * 210.00069 * 15 13 11 18 18 H 1.48499 * 109.47561 * 330.00268 * 15 13 11 19 19 C 1.46897 * 111.00068 * 169.99843 * 9 8 7 20 20 C 1.52998 * 109.46881 * 189.99869 * 19 9 8 21 21 C 1.53003 * 109.47052 * 179.97438 * 20 19 9 22 22 C 1.53005 * 109.47155 * 174.99921 * 21 20 19 23 23 C 1.53000 * 109.47262 * 295.00191 * 21 20 19 24 24 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 25 25 C 1.37892 * 120.16928 * 359.71584 * 24 7 6 26 26 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 27 27 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 28 28 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 29 29 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 31 31 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 32 32 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 33 33 H 1.09000 * 109.46667 * 190.00009 * 10 9 8 34 34 H 1.09002 * 109.47248 * 309.99466 * 10 9 8 35 35 H 0.96992 * 119.99962 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47531 * 310.00144 * 19 9 8 37 37 H 1.08999 * 109.47299 * 70.00142 * 19 9 8 38 38 H 1.09001 * 109.47153 * 300.00008 * 20 19 9 39 39 H 1.08999 * 109.47121 * 60.00567 * 20 19 9 40 40 H 1.09004 * 109.47062 * 55.00463 * 21 20 19 41 41 H 1.09004 * 109.46693 * 60.00317 * 22 21 20 42 42 H 1.08997 * 109.46943 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47044 * 299.99992 * 22 21 20 44 44 H 1.08997 * 109.47068 * 180.02562 * 23 21 20 45 45 H 1.08995 * 109.47113 * 299.99981 * 23 21 20 46 46 H 1.08997 * 109.47156 * 59.99739 * 23 21 20 47 47 H 1.08000 * 119.91724 * 179.74709 * 24 7 6 48 48 H 1.08001 * 120.08323 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 7 4.6268 -5.4012 -1.3888 10 6 3.3669 -5.7245 -2.0714 11 6 2.5835 -4.4588 -2.3062 12 1 2.9816 -3.5091 -1.9805 13 6 1.3581 -4.5131 -2.9359 14 7 0.6743 -3.4085 -3.1403 15 14 0.6693 -6.1558 -3.4986 16 1 -0.1433 -6.7516 -2.4078 17 1 -0.1843 -5.9504 -4.6962 18 1 1.7879 -7.0712 -3.8391 19 6 5.5575 -6.5368 -1.4357 20 6 5.9823 -6.7885 -2.8838 21 6 6.9522 -7.9708 -2.9326 22 6 7.2797 -8.3019 -4.3900 23 6 8.2395 -7.6055 -2.1908 24 6 2.2439 -3.6777 -0.0029 25 6 1.5473 -2.4877 -0.0019 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 4.1856 -0.3457 0.0012 30 1 5.4036 -2.4818 -0.0110 31 1 5.3337 -4.8486 0.5109 32 1 3.7922 -5.7387 0.5095 33 1 3.5836 -6.2004 -3.0278 34 1 2.7819 -6.4042 -1.4517 35 1 -0.1876 -3.4467 -3.5836 36 1 6.4371 -6.3108 -0.8330 37 1 5.0658 -7.4261 -1.0415 38 1 5.1026 -7.0145 -3.4864 39 1 6.4741 -5.8992 -3.2779 40 1 6.4925 -8.8376 -2.4576 41 1 7.7393 -7.4351 -4.8650 42 1 7.9703 -9.1445 -4.4248 43 1 6.3627 -8.5622 -4.9184 44 1 8.9305 -8.4476 -2.2260 45 1 8.6990 -6.7388 -2.6658 46 1 8.0061 -7.3696 -1.1526 47 1 1.7082 -4.6154 -0.0035 48 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294905162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:06 Heat of formation + Delta-G solvation = -13.820833 kcal Electronic energy + Delta-G solvation = -25473.381346 eV Core-core repulsion = 22107.233023 eV Total energy + Delta-G solvation = -3366.148323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.43871 -38.30154 -37.12789 -35.36142 -32.63155 -31.69999 -30.37887 -29.28033 -28.76184 -27.55707 -27.10749 -24.73753 -22.69561 -21.78076 -21.62057 -20.11816 -19.61636 -18.98699 -17.05072 -16.31845 -15.34695 -15.19488 -14.83999 -14.67003 -14.53079 -14.40611 -13.88199 -13.74717 -13.54219 -13.30507 -13.06799 -12.78088 -12.64024 -12.41227 -12.32341 -12.10685 -11.87675 -11.66823 -11.63723 -11.41010 -11.33241 -11.13008 -10.97826 -10.69682 -10.62785 -10.43477 -10.24834 -10.11372 -9.92921 -9.84828 -9.33477 -9.13903 -8.70277 -7.94533 -7.53564 -7.47342 -6.10275 -3.99246 1.45087 2.41512 3.10242 3.19704 3.28849 3.31557 4.34151 4.46423 4.71773 4.87161 5.01823 5.04318 5.18603 5.22039 5.45433 5.55514 5.56543 5.64139 5.68023 5.72167 5.75960 5.78176 5.80653 5.86769 5.89945 5.93076 6.01544 6.03830 6.08339 6.20238 6.21210 6.31333 6.32124 6.36516 6.49263 6.54026 6.67605 6.73652 6.77429 6.83547 6.92473 7.21782 7.27176 7.48274 7.56548 7.81725 7.84346 7.95591 8.11505 8.58491 9.02803 9.48028 10.97884 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.004645 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.504096 B = 6026.331780 C = 7427.877171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.404 3.596 3 O -0.484 6.484 4 C -0.171 4.171 5 C -0.088 4.088 6 C -0.125 4.125 7 C -0.035 4.035 8 C 0.103 3.897 9 N -0.524 5.524 10 C 0.154 3.846 11 C -0.501 4.501 12 H 0.105 0.895 13 C 0.072 3.928 14 N -0.879 5.879 15 Si 0.861 3.139 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.056 3.944 20 C -0.111 4.111 21 C -0.097 4.097 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.034 4.034 25 C -0.071 4.071 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.032 0.968 34 H -0.018 1.018 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.116 0.884 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -5.505 5.679 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.285 3.715 3 O -0.363 6.363 4 C -0.172 4.172 5 C -0.107 4.107 6 C -0.144 4.144 7 C -0.036 4.036 8 C -0.025 4.025 9 N -0.248 5.248 10 C 0.028 3.972 11 C -0.538 4.538 12 H 0.123 0.877 13 C -0.131 4.131 14 N -0.516 5.516 15 Si 0.689 3.311 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.073 4.073 20 C -0.149 4.149 21 C -0.116 4.116 22 C -0.203 4.203 23 C -0.203 4.203 24 C -0.052 4.052 25 C -0.090 4.090 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.000 1.000 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.134 0.866 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.478 -4.514 5.326 9.524 hybrid contribution -1.053 -1.786 -0.386 2.109 sum 5.425 -6.300 4.939 9.670 Atomic orbital electron populations 1.22217 0.94670 1.05090 1.03760 1.22520 0.91405 0.87967 0.69625 1.90446 1.72405 1.34824 1.38577 1.20157 0.94317 0.94110 1.08661 1.20982 0.93079 0.97671 0.98921 1.20626 0.98931 0.91708 1.03139 1.19634 0.93755 0.93977 0.96192 1.20905 0.97829 0.93675 0.90073 1.62042 1.14737 1.34349 1.13624 1.20358 0.86040 0.97133 0.93718 1.21616 1.01531 0.94682 1.35946 0.87739 1.24842 0.97048 0.95454 0.95720 1.69888 1.13598 1.26356 1.41802 0.87079 0.79456 0.85766 0.78835 1.20531 1.21289 1.19394 1.22108 0.96062 0.92171 0.96912 1.21659 0.98772 0.97578 0.96883 1.21114 0.96094 0.98458 0.95922 1.21822 1.01201 1.01035 0.96242 1.21873 0.96992 1.00992 1.00477 1.20557 0.93122 0.97602 0.93965 1.20977 0.99089 0.91230 0.97671 0.89331 0.90250 0.88730 0.86677 0.86992 0.91562 0.95053 0.94967 1.00050 0.92770 0.91655 0.96182 0.91577 0.91133 0.91760 0.92648 0.93191 0.92797 0.93379 0.92657 0.92537 0.86646 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 9.76 36.00 0.35 -2.62 16 2 C 0.40 7.57 7.23 -30.69 -0.22 7.35 16 3 O -0.48 -10.16 17.09 5.57 0.10 -10.06 16 4 C -0.17 -3.38 5.87 -105.06 -0.62 -4.00 16 5 C -0.09 -1.71 9.60 -39.11 -0.38 -2.09 16 6 C -0.13 -2.34 9.47 -39.65 -0.38 -2.72 16 7 C -0.03 -0.67 3.47 -104.50 -0.36 -1.03 16 8 C 0.10 1.79 5.11 -4.98 -0.03 1.77 16 9 N -0.52 -10.01 4.56 -237.52 -1.08 -11.09 16 10 C 0.15 3.39 3.59 -4.98 -0.02 3.38 16 11 C -0.50 -12.52 5.92 -34.44 -0.20 -12.73 16 12 H 0.10 2.85 4.96 -52.49 -0.26 2.59 16 13 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 14 N -0.88 -23.80 13.96 55.43 0.77 -23.02 16 15 Si 0.86 19.93 27.47 -169.99 -4.67 15.26 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.06 0.87 4.71 -3.83 -0.02 0.86 16 20 C -0.11 -1.67 4.64 -26.73 -0.12 -1.79 16 21 C -0.10 -1.16 2.92 -90.62 -0.26 -1.43 16 22 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 23 C -0.15 -1.55 8.95 37.16 0.33 -1.21 16 24 C -0.03 -0.67 5.87 -39.64 -0.23 -0.91 16 25 C -0.07 -1.39 9.24 -39.10 -0.36 -1.75 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.44 6.47 -51.93 -0.34 1.11 16 29 H 0.12 2.15 7.65 -52.49 -0.40 1.75 16 30 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 32 H 0.03 0.53 7.95 -51.92 -0.41 0.12 16 33 H 0.03 0.74 5.04 -51.93 -0.26 0.48 16 34 H -0.02 -0.40 7.41 -51.93 -0.38 -0.79 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.07 0.91 6.35 -51.93 -0.33 0.58 16 37 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.07 1.12 6.31 -51.93 -0.33 0.79 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 47 H 0.12 2.36 7.68 -52.49 -0.40 1.96 16 48 H 0.12 2.15 6.36 -52.49 -0.33 1.82 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -28.21 373.19 -9.55 -37.76 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.02 Total: 3.98 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.27 Total: -18.44 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.31 Total: -34.12 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.10 Total: -10.06 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.21 -9.55 -37.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294905162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.936 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds