Wall clock time and date at job start Tue Mar 31 2020 09:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 C 1.52996 * 109.47163 * 183.02311 * 3 2 1 5 5 H 1.09002 * 109.47621 * 304.66954 * 4 3 2 6 6 C 1.53007 * 109.47185 * 184.66748 * 4 3 2 7 7 C 1.52995 * 109.46913 * 64.99859 * 6 4 3 8 8 C 1.52997 * 109.47012 * 185.00008 * 7 6 4 9 9 C 1.52999 * 109.47087 * 65.00442 * 7 6 4 10 10 C 1.50702 * 109.47129 * 64.66948 * 4 3 2 11 11 O 1.21284 * 120.00493 * 100.61259 * 10 4 3 12 12 N 1.34781 * 119.99918 * 280.61073 * 10 4 3 13 13 C 1.39238 * 119.99955 * 184.99186 * 12 10 4 14 14 C 1.39478 * 119.83423 * 322.90794 * 13 12 10 15 15 C 1.36377 * 120.16930 * 179.76307 * 14 13 12 16 16 C 1.40869 * 119.82478 * 0.50981 * 15 14 13 17 17 C 1.41158 * 120.16326 * 179.72522 * 16 15 14 18 18 H 1.08001 * 119.99653 * 206.55633 * 17 16 15 19 19 C 1.39902 * 119.99772 * 26.55028 * 17 16 15 20 20 N 1.30865 * 120.00427 * 13.00922 * 19 17 16 21 21 Si 1.86805 * 119.99474 * 193.01166 * 19 17 16 22 22 H 1.48491 * 109.47408 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47190 * 120.00096 * 21 19 17 24 24 H 1.48507 * 109.46943 * 239.99907 * 21 19 17 25 25 C 1.40871 * 119.67472 * 359.73965 * 16 15 14 26 26 C 1.36377 * 119.82564 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47313 * 59.99696 * 1 2 3 28 28 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99968 * 1 2 3 30 30 H 1.09003 * 109.47225 * 240.00547 * 2 1 3 31 31 H 1.08998 * 109.47400 * 119.99793 * 2 1 3 32 32 H 1.09000 * 109.47314 * 63.02103 * 3 2 1 33 33 H 1.09000 * 109.47384 * 303.02605 * 3 2 1 34 34 H 1.08997 * 109.47050 * 304.99937 * 6 4 3 35 35 H 1.09002 * 109.46896 * 185.00346 * 6 4 3 36 36 H 1.08992 * 109.47361 * 305.00110 * 7 6 4 37 37 H 1.09003 * 109.47612 * 300.00269 * 8 7 6 38 38 H 1.08998 * 109.47248 * 59.99860 * 8 7 6 39 39 H 1.08997 * 109.47328 * 180.02562 * 8 7 6 40 40 H 1.09000 * 109.47050 * 299.99832 * 9 7 6 41 41 H 1.09002 * 109.47283 * 59.99556 * 9 7 6 42 42 H 1.08993 * 109.47627 * 179.97438 * 9 7 6 43 43 H 0.96998 * 119.99454 * 4.99904 * 12 10 4 44 44 H 1.08003 * 119.91447 * 0.02562 * 14 13 12 45 45 H 1.07997 * 120.08617 * 180.25294 * 15 14 13 46 46 H 0.96998 * 120.00214 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.08687 * 179.97438 * 25 16 15 48 48 H 1.08002 * 119.91108 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5681 1.4432 -0.0761 5 1 3.9729 0.8440 0.7396 6 6 4.0840 2.8789 0.0411 7 6 3.7475 3.4300 1.4280 8 6 4.1512 4.9039 1.5028 9 6 4.5113 2.6376 2.4908 10 6 4.0057 0.8581 -1.3942 11 8 4.3453 1.5900 -2.2997 12 7 4.0197 -0.4785 -1.5668 13 6 4.5216 -1.0230 -2.7459 14 6 4.2955 -0.3755 -3.9605 15 6 4.7880 -0.9002 -5.1189 16 6 5.5175 -2.1049 -5.0879 17 6 6.0256 -2.6574 -6.2834 18 1 6.1916 -3.7219 -6.3585 19 6 6.3139 -1.8259 -7.3710 20 7 6.3592 -0.5282 -7.2087 21 14 6.6343 -2.5684 -9.0550 22 1 6.5253 -4.0470 -8.9729 23 1 5.6339 -2.0507 -10.0227 24 1 7.9991 -2.1976 -9.5079 25 6 5.7373 -2.7557 -3.8580 26 6 5.2426 -2.2163 -2.7073 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.7216 1.9405 0.9158 33 1 1.6331 1.9718 -0.8616 34 1 3.6107 3.4983 -0.7207 35 1 5.1646 2.8894 -0.1019 36 1 2.6762 3.3373 1.6058 37 1 5.2227 4.9967 1.3250 38 1 3.6072 5.4685 0.7456 39 1 3.9119 5.2965 2.4910 40 1 4.2237 1.5876 2.4376 41 1 5.5827 2.7303 2.3131 42 1 4.2720 3.0305 3.4789 43 1 3.6800 -1.0610 -0.8696 44 1 3.7326 0.5459 -3.9831 45 1 4.6156 -0.3957 -6.0581 46 1 6.5595 0.0482 -7.9627 47 1 6.2953 -3.6798 -3.8266 48 1 5.4099 -2.7143 -1.7637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308085104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:17 Heat of formation + Delta-G solvation = -52.772691 kcal Electronic energy + Delta-G solvation = -24913.515280 eV Core-core repulsion = 21545.677878 eV Total energy + Delta-G solvation = -3367.837402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -40.06336 -37.77378 -36.64034 -34.96169 -34.30599 -32.80399 -31.14584 -29.45683 -28.89140 -27.30302 -26.42251 -25.27253 -23.41630 -21.66529 -21.34038 -20.76746 -19.64612 -19.16323 -17.29673 -17.09524 -16.23278 -15.47161 -15.31259 -14.97994 -14.51573 -14.22525 -13.96471 -13.89988 -13.61453 -13.09759 -12.96780 -12.74541 -12.59683 -12.44230 -12.31204 -12.11255 -11.91766 -11.76942 -11.64959 -11.44344 -11.26772 -11.13574 -11.07094 -10.88328 -10.80548 -10.57382 -10.52079 -10.46983 -10.38662 -9.87942 -9.76154 -9.38773 -8.97783 -8.60328 -7.48703 -6.95609 -6.67564 -4.27798 2.63841 3.02984 3.09593 3.13809 3.15093 3.40643 3.79741 3.96438 4.56958 4.68512 4.71965 4.81981 4.91650 4.94115 5.02962 5.17364 5.32928 5.41779 5.47845 5.48290 5.56754 5.67285 5.71505 5.73203 5.78399 5.82548 5.84581 5.93466 5.98248 6.03004 6.13124 6.17098 6.18341 6.21706 6.35049 6.39974 6.43684 6.86528 7.04645 7.08920 7.20763 7.33500 7.64272 7.73033 8.02943 8.09301 8.25750 8.36941 8.67550 8.85929 8.92482 9.05728 10.24849 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.003122 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.293659 B = 8966.324363 C = 9543.461410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C -0.109 4.109 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.095 4.095 7 C -0.099 4.099 8 C -0.147 4.147 9 C -0.150 4.150 10 C 0.503 3.497 11 O -0.528 6.528 12 N -0.654 5.654 13 C -0.005 4.005 14 C -0.086 4.086 15 C -0.154 4.154 16 C 0.104 3.896 17 C -0.459 4.459 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.214 4.214 26 C -0.107 4.107 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.393 0.607 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.280 0.720 47 H 0.095 0.905 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 4.683 15.881 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.147 4.147 4 C -0.128 4.128 5 H 0.108 0.892 6 C -0.133 4.133 7 C -0.117 4.117 8 C -0.204 4.204 9 C -0.207 4.207 10 C 0.290 3.710 11 O -0.404 6.404 12 N -0.298 5.298 13 C -0.097 4.097 14 C -0.106 4.106 15 C -0.174 4.174 16 C 0.102 3.898 17 C -0.489 4.489 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.234 4.234 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.228 0.772 44 H 0.122 0.878 45 H 0.140 0.860 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.458 5.443 15.111 17.709 hybrid contribution 0.181 -0.583 -0.395 0.727 sum -7.277 4.860 14.717 17.122 Atomic orbital electron populations 1.21723 0.95647 1.01644 1.01619 1.21815 0.96424 0.96963 1.02694 1.21624 0.92843 0.97358 1.02874 1.21429 0.97208 0.98314 0.95885 0.89234 1.21441 1.01756 0.93781 0.96331 1.21195 1.00290 0.95160 0.95071 1.21825 1.01657 0.95661 1.01277 1.21913 1.00530 1.00132 0.98168 1.20573 0.78394 0.82499 0.89572 1.90700 1.47296 1.59390 1.43057 1.43232 1.61547 1.06441 1.18589 1.17227 1.09061 0.98520 0.84930 1.20537 1.00086 0.98624 0.91362 1.21078 1.00508 0.98721 0.97084 1.17686 0.88783 0.91415 0.91942 1.19572 1.37693 0.95198 0.96407 0.90471 1.25929 0.93137 0.94576 1.00899 1.69845 1.35156 1.04299 1.32638 0.86244 0.78520 0.80432 0.81389 1.18483 1.19770 1.20025 1.20569 1.07784 1.02772 0.92299 1.20069 0.99311 0.96182 0.97130 0.92694 0.92716 0.92981 0.90819 0.91867 0.90765 0.91349 0.90902 0.91407 0.90961 0.92662 0.92648 0.92953 0.92468 0.92646 0.92996 0.77250 0.87810 0.85978 0.90936 0.88713 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.14 -1.43 5.24 -26.73 -0.14 -1.57 16 3 C -0.11 -1.15 4.54 -26.73 -0.12 -1.28 16 4 C -0.11 -1.32 2.08 -91.77 -0.19 -1.51 16 5 H 0.09 0.96 6.34 -51.93 -0.33 0.63 16 6 C -0.10 -1.16 3.53 -26.73 -0.09 -1.26 16 7 C -0.10 -0.92 2.79 -90.62 -0.25 -1.17 16 8 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 9 C -0.15 -1.28 8.95 37.16 0.33 -0.95 16 10 C 0.50 8.91 6.44 -10.98 -0.07 8.84 16 11 O -0.53 -11.86 13.64 5.55 0.08 -11.78 16 12 N -0.65 -11.60 4.27 -9.74 -0.04 -11.65 16 13 C -0.01 -0.12 6.28 -83.57 -0.52 -0.64 16 14 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 15 C -0.15 -4.19 8.62 -39.26 -0.34 -4.53 16 16 C 0.10 2.83 5.57 -106.80 -0.59 2.24 16 17 C -0.46 -12.33 9.05 -37.85 -0.34 -12.67 16 18 H 0.08 1.98 7.88 -52.49 -0.41 1.56 16 19 C 0.07 1.84 5.22 -17.34 -0.09 1.75 16 20 N -0.79 -21.27 10.80 55.55 0.60 -20.67 16 21 Si 0.91 19.01 29.58 -169.99 -5.03 13.98 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 C -0.21 -5.26 9.74 -39.26 -0.38 -5.64 16 26 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.90 5.56 -51.93 -0.29 0.61 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.64 6.26 -51.93 -0.33 0.32 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.98 8.06 -51.93 -0.42 0.57 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.62 6.25 -51.93 -0.32 0.29 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.47 6.46 -51.93 -0.34 0.13 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.39 5.55 7.19 -40.82 -0.29 5.26 16 44 H 0.10 2.65 6.34 -52.48 -0.33 2.32 16 45 H 0.12 3.46 6.12 -52.49 -0.32 3.14 16 46 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 47 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 48 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -30.26 375.71 -9.58 -39.85 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.01 Total: 10.22 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.84 Total: -25.62 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.56 Total: -32.31 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.26 -9.58 -39.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308085104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.927 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds