Wall clock time and date at job start Tue Mar 31 2020 09:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 C 1.52996 * 109.47163 * 183.02311 * 3 2 1 5 5 H 1.09002 * 109.47621 * 304.66954 * 4 3 2 6 6 C 1.53007 * 109.47185 * 184.66748 * 4 3 2 7 7 C 1.52995 * 109.46913 * 64.99859 * 6 4 3 8 8 C 1.52997 * 109.47012 * 185.00008 * 7 6 4 9 9 C 1.52999 * 109.47087 * 65.00442 * 7 6 4 10 10 C 1.50702 * 109.47129 * 64.66948 * 4 3 2 11 11 O 1.21284 * 120.00493 * 100.61259 * 10 4 3 12 12 N 1.34781 * 119.99918 * 280.61073 * 10 4 3 13 13 C 1.39238 * 119.99955 * 184.99186 * 12 10 4 14 14 C 1.39478 * 119.83423 * 322.90794 * 13 12 10 15 15 C 1.36377 * 120.16930 * 179.76307 * 14 13 12 16 16 C 1.40869 * 119.82478 * 0.50981 * 15 14 13 17 17 C 1.41158 * 120.16326 * 179.72522 * 16 15 14 18 18 H 1.08001 * 119.99653 * 206.55633 * 17 16 15 19 19 C 1.39902 * 119.99772 * 26.55028 * 17 16 15 20 20 N 1.30865 * 120.00427 * 13.00922 * 19 17 16 21 21 Si 1.86805 * 119.99474 * 193.01166 * 19 17 16 22 22 H 1.48491 * 109.47408 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47190 * 120.00096 * 21 19 17 24 24 H 1.48507 * 109.46943 * 239.99907 * 21 19 17 25 25 C 1.40871 * 119.67472 * 359.73965 * 16 15 14 26 26 C 1.36377 * 119.82564 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47313 * 59.99696 * 1 2 3 28 28 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46662 * 299.99968 * 1 2 3 30 30 H 1.09003 * 109.47225 * 240.00547 * 2 1 3 31 31 H 1.08998 * 109.47400 * 119.99793 * 2 1 3 32 32 H 1.09000 * 109.47314 * 63.02103 * 3 2 1 33 33 H 1.09000 * 109.47384 * 303.02605 * 3 2 1 34 34 H 1.08997 * 109.47050 * 304.99937 * 6 4 3 35 35 H 1.09002 * 109.46896 * 185.00346 * 6 4 3 36 36 H 1.08992 * 109.47361 * 305.00110 * 7 6 4 37 37 H 1.09003 * 109.47612 * 300.00269 * 8 7 6 38 38 H 1.08998 * 109.47248 * 59.99860 * 8 7 6 39 39 H 1.08997 * 109.47328 * 180.02562 * 8 7 6 40 40 H 1.09000 * 109.47050 * 299.99832 * 9 7 6 41 41 H 1.09002 * 109.47283 * 59.99556 * 9 7 6 42 42 H 1.08993 * 109.47627 * 179.97438 * 9 7 6 43 43 H 0.96998 * 119.99454 * 4.99904 * 12 10 4 44 44 H 1.08003 * 119.91447 * 0.02562 * 14 13 12 45 45 H 1.07997 * 120.08617 * 180.25294 * 15 14 13 46 46 H 0.96998 * 120.00214 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.08687 * 179.97438 * 25 16 15 48 48 H 1.08002 * 119.91108 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5681 1.4432 -0.0761 5 1 3.9729 0.8440 0.7396 6 6 4.0840 2.8789 0.0411 7 6 3.7475 3.4300 1.4280 8 6 4.1512 4.9039 1.5028 9 6 4.5113 2.6376 2.4908 10 6 4.0057 0.8581 -1.3942 11 8 4.3453 1.5900 -2.2997 12 7 4.0197 -0.4785 -1.5668 13 6 4.5216 -1.0230 -2.7459 14 6 4.2955 -0.3755 -3.9605 15 6 4.7880 -0.9002 -5.1189 16 6 5.5175 -2.1049 -5.0879 17 6 6.0256 -2.6574 -6.2834 18 1 6.1916 -3.7219 -6.3585 19 6 6.3139 -1.8259 -7.3710 20 7 6.3592 -0.5282 -7.2087 21 14 6.6343 -2.5684 -9.0550 22 1 6.5253 -4.0470 -8.9729 23 1 5.6339 -2.0507 -10.0227 24 1 7.9991 -2.1976 -9.5079 25 6 5.7373 -2.7557 -3.8580 26 6 5.2426 -2.2163 -2.7073 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.7216 1.9405 0.9158 33 1 1.6331 1.9718 -0.8616 34 1 3.6107 3.4983 -0.7207 35 1 5.1646 2.8894 -0.1019 36 1 2.6762 3.3373 1.6058 37 1 5.2227 4.9967 1.3250 38 1 3.6072 5.4685 0.7456 39 1 3.9119 5.2965 2.4910 40 1 4.2237 1.5876 2.4376 41 1 5.5827 2.7303 2.3131 42 1 4.2720 3.0305 3.4789 43 1 3.6800 -1.0610 -0.8696 44 1 3.7326 0.5459 -3.9831 45 1 4.6156 -0.3957 -6.0581 46 1 6.5595 0.0482 -7.9627 47 1 6.2953 -3.6798 -3.8266 48 1 5.4099 -2.7143 -1.7637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308085104.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:12 Heat of formation + Delta-G solvation = -67.844302 kcal Electronic energy + Delta-G solvation = -24914.168834 eV Core-core repulsion = 21545.677878 eV Total energy + Delta-G solvation = -3368.490956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 8.29 seconds Orbital eigenvalues (eV) -41.51609 -39.38599 -37.92272 -36.28110 -35.66512 -34.54850 -32.12610 -31.39911 -30.72948 -27.96857 -27.33554 -26.98786 -24.72756 -23.20580 -22.76597 -22.14178 -20.99121 -20.29178 -19.25253 -18.46739 -17.82104 -17.13430 -16.47393 -16.13166 -15.76653 -15.63855 -15.27091 -15.08807 -14.76134 -14.53776 -14.38559 -14.03244 -13.92378 -13.70532 -13.45616 -13.38607 -13.24979 -13.03295 -12.84856 -12.81301 -12.66456 -12.44828 -12.32555 -12.05212 -11.85619 -11.74044 -11.68677 -11.57569 -11.42651 -11.36806 -11.24903 -11.20404 -10.65520 -10.34997 -9.45970 -8.85384 -8.59192 -6.29452 0.81829 1.13152 1.37167 1.43591 1.53485 1.83529 2.20372 2.38939 2.77255 3.62683 3.72042 3.77637 3.87499 4.12673 4.14669 4.23986 4.27799 4.42693 4.43185 4.47903 4.56972 4.67784 4.73021 4.84368 4.89452 4.94919 4.98163 5.00025 5.05093 5.09561 5.10635 5.15577 5.19526 5.22488 5.28434 5.31371 5.35162 5.38783 5.44395 5.45067 5.52884 5.59056 5.68298 5.88111 6.08898 6.12179 6.33901 6.68209 6.75987 6.92618 7.00904 7.46621 8.35532 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.003122 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.293659 B = 8966.324363 C = 9543.461410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C -0.103 4.103 4 C -0.093 4.093 5 H 0.120 0.880 6 C -0.094 4.094 7 C -0.091 4.091 8 C -0.149 4.149 9 C -0.150 4.150 10 C 0.498 3.502 11 O -0.581 6.581 12 N -0.643 5.643 13 C 0.008 3.992 14 C -0.101 4.101 15 C -0.179 4.179 16 C 0.072 3.928 17 C -0.493 4.493 18 H 0.082 0.918 19 C 0.026 3.974 20 N -0.835 5.835 21 Si 0.988 3.012 22 H -0.253 1.253 23 H -0.267 1.267 24 H -0.267 1.267 25 C -0.221 4.221 26 C -0.101 4.101 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.415 0.585 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.285 0.715 47 H 0.111 0.889 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 3.615 18.885 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.141 4.141 4 C -0.114 4.114 5 H 0.138 0.862 6 C -0.132 4.132 7 C -0.109 4.109 8 C -0.206 4.206 9 C -0.207 4.207 10 C 0.288 3.712 11 O -0.461 6.461 12 N -0.290 5.290 13 C -0.085 4.085 14 C -0.121 4.121 15 C -0.199 4.199 16 C 0.069 3.931 17 C -0.522 4.522 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.461 5.461 21 Si 0.808 3.192 22 H -0.176 1.176 23 H -0.192 1.192 24 H -0.192 1.192 25 C -0.241 4.241 26 C -0.121 4.121 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.254 0.746 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.129 0.871 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.118 4.356 18.172 20.374 hybrid contribution 0.330 -0.173 -1.182 1.239 sum -7.787 4.183 16.990 19.152 Atomic orbital electron populations 1.21719 0.94956 1.02055 1.01871 1.21822 0.97083 0.96289 1.02684 1.21633 0.90889 0.98075 1.03498 1.21460 0.98685 0.98214 0.93016 0.86217 1.21427 1.00097 0.93646 0.98007 1.21161 1.01398 0.95285 0.93077 1.21845 1.01054 0.95531 1.02170 1.21924 0.99785 1.00517 0.98515 1.21651 0.76722 0.81915 0.90931 1.90690 1.49434 1.60548 1.45404 1.43181 1.61178 1.07053 1.17539 1.17321 1.07517 0.98093 0.85614 1.20553 1.00563 0.98568 0.92427 1.20961 1.02375 0.99700 0.96849 1.18024 0.89622 0.91900 0.93541 1.19854 1.39209 0.95641 0.97535 0.90023 1.26878 0.92274 0.94738 1.04826 1.69940 1.36275 1.05850 1.34065 0.85079 0.78567 0.79738 0.75802 1.17588 1.19195 1.19207 1.20859 1.07808 1.03239 0.92186 1.20435 0.97729 0.95659 0.98294 0.94114 0.92274 0.91103 0.93362 0.89185 0.87608 0.93482 0.93062 0.93630 0.89302 0.93549 0.93171 0.91131 0.91605 0.93612 0.91333 0.74594 0.89109 0.88434 0.90446 0.87098 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.14 -2.43 5.24 30.60 0.16 -2.27 16 3 C -0.10 -1.92 4.54 30.59 0.14 -1.78 16 4 C -0.09 -2.12 2.08 -11.54 -0.02 -2.14 16 5 H 0.12 2.07 6.34 -2.39 -0.02 2.06 16 6 C -0.09 -2.22 3.53 30.59 0.11 -2.12 16 7 C -0.09 -1.45 2.79 -10.80 -0.03 -1.48 16 8 C -0.15 -2.36 9.19 71.98 0.66 -1.70 16 9 C -0.15 -2.04 8.95 71.98 0.64 -1.40 16 10 C 0.50 17.54 6.44 87.66 0.56 18.10 16 11 O -0.58 -27.15 13.64 -3.04 -0.04 -27.19 16 12 N -0.64 -22.00 4.27 -303.11 -1.30 -23.30 16 13 C 0.01 0.36 6.28 38.56 0.24 0.60 16 14 C -0.10 -5.35 8.61 22.13 0.19 -5.16 16 15 C -0.18 -10.30 8.62 22.48 0.19 -10.11 16 16 C 0.07 4.03 5.57 -21.27 -0.12 3.91 16 17 C -0.49 -27.34 9.05 23.39 0.21 -27.13 16 18 H 0.08 4.28 7.88 -2.91 -0.02 4.25 16 19 C 0.03 1.38 5.22 85.24 0.45 1.83 16 20 N -0.83 -46.93 10.80 21.82 0.24 -46.70 16 21 Si 0.99 39.80 29.58 68.60 2.03 41.83 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 C -0.22 -10.82 9.74 22.48 0.22 -10.60 16 26 C -0.10 -4.34 9.90 22.13 0.22 -4.12 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.08 5.56 -2.39 -0.01 1.07 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.37 6.26 -2.39 -0.01 1.35 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.42 8.06 -2.39 -0.02 1.40 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.16 6.25 -2.39 -0.01 1.14 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.78 6.46 -2.39 -0.02 0.76 16 41 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.42 10.52 7.19 -92.71 -0.67 9.85 16 44 H 0.09 4.96 6.34 -2.91 -0.02 4.94 16 45 H 0.10 5.98 6.12 -2.91 -0.02 5.96 16 46 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 47 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 48 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -70.93 375.71 5.74 -65.19 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.27 Total: 37.37 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 4.54 Total: -47.20 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.06 Total: -69.99 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.04 Total: -27.19 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -70.93 5.74 -65.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308085104.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.658 kcal (2) G-P(sol) polarization free energy of solvation -70.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.30 seconds