Wall clock time and date at job start Tue Mar 31 2020 08:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 C 1.53001 * 109.47305 * 120.00094 * 2 1 3 5 5 H 1.08999 * 112.78411 * 310.81163 * 4 2 1 6 6 C 1.53513 * 113.47170 * 81.61941 * 4 2 1 7 7 C 1.53513 * 83.57187 * 140.79278 * 6 4 2 8 8 N 1.47473 * 87.93357 * 333.97244 * 7 6 4 9 9 C 1.46897 * 111.00297 * 138.70391 * 8 7 6 10 10 C 1.50706 * 109.46900 * 91.52505 * 9 8 7 11 11 C 1.38296 * 119.96823 * 90.00128 * 10 9 8 12 12 C 1.38241 * 120.10937 * 179.97438 * 11 10 9 13 13 C 1.38171 * 120.05646 * 359.96099 * 12 11 10 14 14 C 1.38712 * 119.94107 * 0.02562 * 13 12 11 15 15 O 1.35901 * 120.05008 * 180.02562 * 14 13 12 16 16 C 1.42897 * 117.00255 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.47161 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.46928 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00530 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00040 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99644 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00470 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47147 * 60.00149 * 22 20 18 24 24 H 1.48495 * 109.47497 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47172 * 300.00489 * 22 20 18 26 26 C 1.38119 * 119.97544 * 269.72879 * 10 9 8 27 27 H 1.08998 * 109.46792 * 300.00171 * 1 2 3 28 28 H 1.08999 * 109.47107 * 59.99757 * 1 2 3 29 29 H 1.08998 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46723 * 240.00374 * 2 1 3 31 31 H 1.09000 * 109.47049 * 60.00574 * 3 2 1 32 32 H 1.09005 * 109.46994 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47362 * 300.00087 * 3 2 1 34 34 H 1.08997 * 114.17866 * 27.14260 * 6 4 2 35 35 H 1.09006 * 114.34318 * 254.44676 * 6 4 2 36 36 H 1.09001 * 113.47316 * 219.20376 * 7 6 4 37 37 H 1.09003 * 113.48071 * 88.74283 * 7 6 4 38 38 H 1.09000 * 109.46743 * 331.53457 * 9 8 7 39 39 H 1.09000 * 109.47313 * 211.52640 * 9 8 7 40 40 H 1.07998 * 119.94426 * 359.97438 * 11 10 9 41 41 H 1.07991 * 119.97058 * 179.97438 * 12 11 10 42 42 H 1.07997 * 120.02798 * 180.02562 * 13 12 11 43 43 H 1.09006 * 109.46655 * 299.99461 * 16 15 14 44 44 H 1.08996 * 109.47775 * 59.99694 * 16 15 14 45 45 H 1.08998 * 109.47126 * 299.99636 * 17 16 15 46 46 H 1.09004 * 109.46806 * 59.99559 * 17 16 15 47 47 H 0.97000 * 119.99725 * 179.97438 * 21 20 18 48 48 H 1.08004 * 120.02495 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5616 -0.3710 2.1638 6 6 2.0504 -2.2501 1.1111 7 6 3.3748 -2.1380 1.8792 8 7 3.5113 -0.7728 1.3384 9 6 4.0092 0.1528 2.3646 10 6 5.5138 0.2102 2.3019 11 6 6.1364 1.1408 1.4901 12 6 7.5164 1.1963 1.4307 13 6 8.2772 0.3223 2.1833 14 6 7.6551 -0.6118 2.9985 15 8 8.4012 -1.4723 3.7400 16 6 9.8215 -1.3584 3.6319 17 6 10.4867 -2.4010 4.5329 18 6 11.9846 -2.2814 4.4184 19 1 12.4187 -1.5361 3.7685 20 6 12.8009 -3.1228 5.1442 21 7 12.2722 -4.0301 5.9361 22 14 14.6575 -2.9741 5.0030 23 1 15.0787 -1.6139 5.4247 24 1 15.3031 -3.9860 5.8772 25 1 15.0668 -3.2044 3.5942 26 6 6.2699 -0.6629 3.0594 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 2.1575 -2.6051 0.0862 35 1 1.2570 -2.7563 1.6612 36 1 4.1427 -2.8249 1.5233 37 1 3.2526 -2.1659 2.9620 38 1 3.6997 -0.1965 3.3497 39 1 3.5999 1.1472 2.1865 40 1 5.5435 1.8252 0.9016 41 1 8.0002 1.9236 0.7958 42 1 9.3553 0.3663 2.1369 43 1 10.1218 -1.5269 2.5977 44 1 10.1308 -0.3604 3.9421 45 1 10.1864 -2.2322 5.5670 46 1 10.1775 -3.3993 4.2230 47 1 12.8464 -4.6223 6.4464 48 1 5.7832 -1.3863 3.6968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342861421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:42 Heat of formation + Delta-G solvation = -2.110769 kcal Electronic energy + Delta-G solvation = -24105.623888 eV Core-core repulsion = 20739.983352 eV Total energy + Delta-G solvation = -3365.640536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -40.76300 -39.57449 -37.20131 -34.91616 -33.39108 -32.48991 -30.81523 -29.39021 -28.75399 -27.23699 -25.82916 -25.19675 -24.37387 -22.25665 -21.71359 -20.98138 -20.14084 -19.80943 -17.58735 -16.38305 -16.18086 -15.94251 -15.61212 -15.45195 -15.27152 -14.81059 -14.56032 -14.44409 -14.12499 -13.32615 -13.14135 -13.08946 -12.72603 -12.66852 -12.50042 -12.42692 -12.31027 -12.03040 -11.80178 -11.52746 -11.40010 -11.28963 -11.06767 -11.05435 -10.89918 -10.82546 -10.67166 -10.42339 -10.31320 -9.83664 -9.65215 -9.30981 -9.09740 -8.63418 -8.44289 -7.79542 -6.10035 -4.14704 1.49409 1.74157 3.28876 3.33139 3.34979 3.65829 3.86772 4.09142 4.22378 4.40562 4.42480 4.68351 4.72238 4.86814 4.91374 5.02063 5.07629 5.11587 5.20277 5.26161 5.32066 5.34551 5.41343 5.44326 5.51972 5.53994 5.57720 5.65115 5.67035 5.70341 5.74354 5.84844 5.92332 6.02359 6.04938 6.07729 6.09023 6.18836 6.23967 6.58803 6.60705 6.74501 6.76006 6.88635 7.03616 7.51226 7.64457 7.82223 8.08349 8.24371 8.90608 9.49419 11.01487 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031057 B = 0.002305 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.342656 B =12143.515423 C =12790.501308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.147 4.147 4 C 0.031 3.969 5 H 0.075 0.925 6 C -0.142 4.142 7 C -0.003 4.003 8 N -0.457 5.457 9 C 0.060 3.940 10 C -0.039 4.039 11 C -0.153 4.153 12 C -0.081 4.081 13 C -0.212 4.212 14 C 0.145 3.855 15 O -0.317 6.317 16 C 0.066 3.934 17 C 0.026 3.974 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.154 4.154 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.430 9.397 -10.911 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.204 4.204 4 C -0.078 4.078 5 H 0.093 0.907 6 C -0.180 4.180 7 C -0.132 4.132 8 N -0.179 5.179 9 C -0.068 4.068 10 C -0.040 4.040 11 C -0.172 4.172 12 C -0.099 4.099 13 C -0.231 4.231 14 C 0.098 3.902 15 O -0.230 6.230 16 C -0.008 4.008 17 C -0.011 4.011 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.173 4.173 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.988 9.249 -11.200 27.193 hybrid contribution 0.916 0.108 0.707 1.162 sum -22.073 9.357 -10.493 26.170 Atomic orbital electron populations 1.21809 0.95224 1.01691 1.01659 1.20992 0.94885 0.96373 0.97399 1.21809 1.02007 0.95519 1.01066 1.23481 0.90137 0.95764 0.98415 0.90690 1.23215 0.97518 0.95503 1.01756 1.23817 0.98101 0.92857 0.98396 1.68941 1.10891 1.02156 1.35906 1.21632 0.92198 0.98489 0.94437 1.19265 0.93950 0.95035 0.95747 1.20715 0.94272 1.00800 1.01385 1.20868 0.93691 0.97670 0.97650 1.21371 1.00799 0.99284 1.01685 1.19139 0.91331 0.89303 0.90382 1.86162 1.21281 1.53590 1.61980 1.23318 0.74780 1.01620 1.01128 1.19117 0.94209 0.93201 0.94612 1.20935 0.90341 1.18460 1.26765 0.92418 1.24997 0.99190 0.95047 0.94996 1.69971 1.35545 1.19972 1.27281 0.86537 0.84742 0.77903 0.78126 1.20094 1.21114 1.20087 1.20224 0.90827 1.02301 1.03982 0.92898 0.92597 0.92651 0.90555 0.93305 0.91718 0.92992 0.88924 0.90806 0.89442 0.91230 0.92962 0.89895 0.86638 0.86258 0.85340 0.93161 0.93182 0.95437 0.95425 0.92659 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 2 C -0.08 -0.57 2.85 -90.62 -0.26 -0.83 16 3 C -0.15 -1.10 8.29 37.16 0.31 -0.79 16 4 C 0.03 0.25 2.40 -71.44 -0.17 0.08 16 5 H 0.08 0.57 7.91 -51.93 -0.41 0.16 16 6 C -0.14 -1.09 7.99 -26.20 -0.21 -1.30 16 7 C 0.00 -0.03 7.69 -7.56 -0.06 -0.09 16 8 N -0.46 -4.68 5.63 -237.97 -1.34 -6.02 16 9 C 0.06 0.64 4.62 -4.97 -0.02 0.61 16 10 C -0.04 -0.53 5.45 -104.64 -0.57 -1.10 16 11 C -0.15 -1.98 9.70 -39.56 -0.38 -2.37 16 12 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 13 C -0.21 -3.46 9.04 -39.43 -0.36 -3.82 16 14 C 0.15 2.63 6.69 -39.22 -0.26 2.36 16 15 O -0.32 -6.71 10.14 -19.43 -0.20 -6.90 16 16 C 0.07 1.44 4.68 37.16 0.17 1.61 16 17 C 0.03 0.68 5.34 -27.88 -0.15 0.54 16 18 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.15 -2.42 9.64 -39.44 -0.38 -2.80 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.63 7.97 -51.93 -0.41 0.21 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.57 7.28 -51.93 -0.38 0.19 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.63 7.44 -51.93 -0.39 0.25 16 38 H 0.05 0.52 7.29 -51.93 -0.38 0.15 16 39 H 0.08 0.78 6.97 -51.93 -0.36 0.42 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.13 2.06 6.30 -52.49 -0.33 1.73 16 43 H 0.05 1.05 7.66 -51.93 -0.40 0.66 16 44 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -30.24 386.07 -11.30 -41.54 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.49 Total: -1.49 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.81 Total: -23.44 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: -0.60 Total: -31.90 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.20 Total: -6.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.24 -11.30 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342861421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.427 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds