Wall clock time and date at job start Tue Mar 31 2020 10:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53009 * 109.47029 * 2 1 4 4 C 1.52999 * 109.47147 * 119.99524 * 2 1 3 5 5 O 1.42896 * 109.47153 * 175.00270 * 4 2 1 6 6 C 1.42905 * 114.00006 * 180.02562 * 5 4 2 7 7 H 1.09000 * 110.62853 * 26.88899 * 6 5 4 8 8 C 1.55142 * 110.85333 * 263.68517 * 6 5 4 9 9 C 1.54907 * 101.65529 * 205.89245 * 8 6 5 10 10 N 1.47853 * 104.79499 * 37.06839 * 9 8 6 11 11 C 1.46895 * 110.99903 * 213.63828 * 10 9 8 12 12 C 1.50697 * 109.47496 * 290.84219 * 11 10 9 13 13 C 1.38640 * 119.74952 * 270.30356 * 12 11 10 14 14 C 1.37613 * 120.24543 * 180.30058 * 13 12 11 15 15 C 1.40709 * 119.74954 * 359.42165 * 14 13 12 16 16 C 1.41391 * 120.24881 * 180.29949 * 15 14 13 17 17 H 1.08006 * 120.00159 * 24.38124 * 16 15 14 18 18 C 1.39949 * 120.00394 * 204.37955 * 16 15 14 19 19 N 1.30826 * 119.99793 * 17.83971 * 18 16 15 20 20 Si 1.86793 * 120.00334 * 197.84214 * 18 16 15 21 21 H 1.48504 * 109.47163 * 59.99946 * 20 18 16 22 22 H 1.48493 * 109.47398 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47268 * 300.00028 * 20 18 16 24 24 C 1.40717 * 119.50871 * 0.27696 * 15 14 13 25 25 C 1.37615 * 119.74803 * 359.97438 * 24 15 14 26 26 C 1.47451 * 108.56309 * 335.90696 * 10 9 8 27 27 H 1.09000 * 109.47923 * 300.00420 * 1 2 3 28 28 H 1.09001 * 109.47189 * 60.00197 * 1 2 3 29 29 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47495 * 239.99398 * 2 1 3 31 31 H 1.09005 * 109.46863 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46598 * 299.99057 * 3 2 1 33 33 H 1.08991 * 109.47094 * 59.99703 * 3 2 1 34 34 H 1.08994 * 109.47262 * 54.99790 * 4 2 1 35 35 H 1.09004 * 109.46998 * 295.00307 * 4 2 1 36 36 H 1.09003 * 110.99440 * 323.98216 * 8 6 5 37 37 H 1.08999 * 110.99441 * 87.76255 * 8 6 5 38 38 H 1.09000 * 110.37555 * 278.24480 * 9 8 6 39 39 H 1.08994 * 110.37774 * 155.89744 * 9 8 6 40 40 H 1.09008 * 109.46933 * 170.83911 * 11 10 9 41 41 H 1.09004 * 109.47382 * 50.84660 * 11 10 9 42 42 H 1.07998 * 119.87277 * 359.97438 * 13 12 11 43 43 H 1.08008 * 120.12380 * 179.69269 * 14 13 12 44 44 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.12753 * 180.02562 * 24 15 14 46 46 H 1.08003 * 119.88271 * 180.02562 * 25 24 15 47 47 H 1.08999 * 109.88236 * 120.39469 * 26 10 9 48 48 H 1.09001 * 109.88541 * 241.42051 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 3.4640 -0.8236 1.1921 6 6 4.0448 -1.4854 2.3177 7 1 3.3351 -2.1840 2.7607 8 6 4.5327 -0.4569 3.3718 9 6 5.6545 -1.2503 4.0873 10 7 6.3075 -2.0312 3.0150 11 6 6.7784 -3.3277 3.5201 12 6 7.9312 -3.1097 4.4659 13 6 9.2277 -3.0829 3.9756 14 6 10.2884 -2.8907 4.8310 15 6 10.0524 -2.7089 6.2062 16 6 11.1339 -2.5043 7.0936 17 1 12.0656 -2.1005 6.7255 18 6 10.9974 -2.8251 8.4490 19 7 10.0339 -3.6194 8.8393 20 14 12.1906 -2.1190 9.7007 21 1 12.1164 -0.6361 9.6737 22 1 11.8324 -2.6075 11.0565 23 1 13.5715 -2.5516 9.3671 24 6 8.7318 -2.7318 6.6917 25 6 7.6867 -2.9307 5.8188 26 6 5.3448 -2.2115 1.9128 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6053 -1.7196 1.2953 35 1 1.7515 -0.1581 2.1370 36 1 4.9320 0.4359 2.8906 37 1 3.7325 -0.1992 4.0655 38 1 5.2287 -1.9173 4.8368 39 1 6.3682 -0.5671 4.5476 40 1 7.1061 -3.9460 2.6843 41 1 5.9663 -3.8292 4.0466 42 1 9.4062 -3.2185 2.9191 43 1 11.2981 -2.8751 4.4476 44 1 9.9395 -3.8420 9.7787 45 1 8.5391 -2.5929 7.7453 46 1 6.6723 -2.9482 6.1890 47 1 5.7437 -1.7749 0.9971 48 1 5.1481 -3.2730 1.7623 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343585401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:46 Heat of formation + Delta-G solvation = -41.405837 kcal Electronic energy + Delta-G solvation = -24190.959572 eV Core-core repulsion = 20823.615074 eV Total energy + Delta-G solvation = -3367.344498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.46090 -37.95902 -36.99546 -35.07246 -33.75840 -31.59932 -29.61610 -29.11938 -28.42747 -27.42933 -26.38615 -25.71602 -23.48903 -21.37615 -20.96716 -20.60040 -20.34247 -19.72716 -17.25974 -17.22183 -16.13653 -15.65828 -15.26095 -14.91720 -14.63541 -14.29353 -14.06046 -14.02872 -13.57927 -13.29437 -12.99572 -12.85767 -12.60661 -12.47904 -12.42602 -12.15339 -11.91183 -11.71983 -11.57900 -11.44590 -11.32050 -11.13861 -11.06230 -10.96548 -10.87204 -10.78350 -10.59738 -10.48424 -10.34422 -9.61708 -9.48323 -9.33508 -9.09326 -7.94653 -7.40340 -7.25491 -6.73958 -4.31836 2.77202 3.07107 3.09903 3.12934 3.20415 3.45913 3.94573 4.31922 4.52339 4.59665 4.65734 4.72408 4.82383 4.91181 5.00435 5.17231 5.20521 5.31271 5.41293 5.44961 5.51163 5.57407 5.63414 5.66807 5.73613 5.77632 5.80323 5.89420 5.94451 5.98287 6.08333 6.09459 6.17663 6.27286 6.34615 6.42701 6.45921 6.97677 7.10093 7.15309 7.25108 7.38008 7.41872 7.46367 7.65659 7.92618 8.08912 8.18031 8.34138 8.67319 8.92920 9.01648 10.20579 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.002310 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.361682 B =12119.715345 C =12379.714002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.066 3.934 5 O -0.372 6.372 6 C 0.069 3.931 7 H 0.064 0.936 8 C -0.150 4.150 9 C 0.052 3.948 10 N -0.517 5.517 11 C 0.115 3.885 12 C -0.207 4.207 13 C -0.069 4.069 14 C -0.228 4.228 15 C 0.112 3.888 16 C -0.463 4.463 17 H 0.076 0.924 18 C 0.076 3.924 19 N -0.795 5.795 20 Si 0.907 3.093 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.166 4.166 25 C -0.093 4.093 26 C 0.044 3.956 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.280 0.720 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.248 4.872 -11.038 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.291 6.291 6 C 0.011 3.989 7 H 0.082 0.918 8 C -0.188 4.188 9 C -0.075 4.075 10 N -0.242 5.242 11 C -0.012 4.012 12 C -0.208 4.208 13 C -0.088 4.088 14 C -0.248 4.248 15 C 0.109 3.891 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.732 3.268 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.186 4.186 25 C -0.112 4.112 26 C -0.084 4.084 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.803 5.069 -11.165 20.002 hybrid contribution -0.361 -0.373 1.252 1.355 sum -16.164 4.696 -9.913 19.534 Atomic orbital electron populations 1.21789 0.94471 1.01906 1.02191 1.21098 0.95319 0.97057 0.97932 1.21784 1.02152 0.94956 1.01264 1.22601 0.81635 0.98915 0.97962 1.87908 1.19508 1.78681 1.42990 1.23393 0.95054 0.93663 0.86834 0.91836 1.23203 0.98443 0.99439 0.97723 1.22906 0.94771 0.96512 0.93318 1.63799 1.34135 1.18198 1.08066 1.20967 0.95318 0.88389 0.96523 1.18812 0.92788 1.16327 0.92906 1.20323 0.92459 0.99191 0.96848 1.20968 0.96567 1.12773 0.94469 1.17613 0.92792 0.87371 0.91276 1.19564 0.99660 1.37855 0.92212 0.90544 1.25907 0.95849 0.92791 0.99604 1.69825 1.29220 1.24902 1.18051 0.86386 0.81027 0.80516 0.78892 1.18842 1.20409 1.19028 1.21267 0.91951 1.06298 0.99055 1.20500 0.96839 1.00923 0.92922 1.22853 0.89967 0.98583 0.96981 0.92537 0.92045 0.92587 0.90398 0.91651 0.92911 0.92955 0.93637 0.93484 0.89837 0.91315 0.93628 0.89668 0.91673 0.95698 0.89496 0.89138 0.90916 0.86607 0.90068 0.89757 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.15 0.34 -0.58 16 2 C -0.10 -0.78 3.16 -90.62 -0.29 -1.06 16 3 C -0.14 -1.19 9.09 37.16 0.34 -0.85 16 4 C 0.07 0.62 5.15 37.16 0.19 0.81 16 5 O -0.37 -4.50 9.61 -35.23 -0.34 -4.84 16 6 C 0.07 0.85 3.43 -24.91 -0.09 0.77 16 7 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 8 C -0.15 -1.91 6.81 -24.59 -0.17 -2.08 16 9 C 0.05 0.81 5.60 -2.29 -0.01 0.80 16 10 N -0.52 -8.57 5.15 -232.69 -1.20 -9.76 16 11 C 0.11 2.05 4.71 -4.98 -0.02 2.02 16 12 C -0.21 -4.49 5.12 -104.33 -0.53 -5.03 16 13 C -0.07 -1.58 9.67 -39.66 -0.38 -1.97 16 14 C -0.23 -5.70 9.80 -38.88 -0.38 -6.09 16 15 C 0.11 3.02 5.57 -106.83 -0.60 2.42 16 16 C -0.46 -12.42 9.05 -37.74 -0.34 -12.77 16 17 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -20.65 10.95 55.55 0.61 -20.04 16 20 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 25 C -0.09 -2.15 8.88 -39.66 -0.35 -2.50 16 26 C 0.04 0.61 6.64 -2.84 -0.02 0.60 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.40 8.11 -51.93 -0.42 -0.03 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.71 6.97 -51.93 -0.36 0.35 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 1.10 7.97 -51.92 -0.41 0.69 16 41 H 0.02 0.43 7.79 -51.93 -0.40 0.02 16 42 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 44 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 45 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 46 H 0.08 1.71 7.46 -52.48 -0.39 1.32 16 47 H 0.08 1.20 8.06 -51.93 -0.42 0.79 16 48 H 0.05 0.71 7.55 -51.93 -0.39 0.32 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -27.48 381.79 -11.51 -38.98 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.56 Total: 4.48 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -2.74 Total: -28.34 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: -0.59 Total: -29.81 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.34 Total: -4.84 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.48 -11.51 -38.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343585401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.423 kcal (2) G-P(sol) polarization free energy of solvation -27.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds