Wall clock time and date at job start Tue Mar 31 2020 10:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53009 * 109.47029 * 2 1 4 4 C 1.52999 * 109.47147 * 119.99524 * 2 1 3 5 5 O 1.42896 * 109.47153 * 175.00270 * 4 2 1 6 6 C 1.42905 * 114.00006 * 180.02562 * 5 4 2 7 7 H 1.09000 * 110.62853 * 26.88899 * 6 5 4 8 8 C 1.55142 * 110.85333 * 263.68517 * 6 5 4 9 9 C 1.54907 * 101.65529 * 205.89245 * 8 6 5 10 10 N 1.47853 * 104.79499 * 37.06839 * 9 8 6 11 11 C 1.46895 * 110.99903 * 213.63828 * 10 9 8 12 12 C 1.50697 * 109.47496 * 290.84219 * 11 10 9 13 13 C 1.38640 * 119.74952 * 270.30356 * 12 11 10 14 14 C 1.37613 * 120.24543 * 180.30058 * 13 12 11 15 15 C 1.40709 * 119.74954 * 359.42165 * 14 13 12 16 16 C 1.41391 * 120.24881 * 180.29949 * 15 14 13 17 17 H 1.08006 * 120.00159 * 24.38124 * 16 15 14 18 18 C 1.39949 * 120.00394 * 204.37955 * 16 15 14 19 19 N 1.30826 * 119.99793 * 17.83971 * 18 16 15 20 20 Si 1.86793 * 120.00334 * 197.84214 * 18 16 15 21 21 H 1.48504 * 109.47163 * 59.99946 * 20 18 16 22 22 H 1.48493 * 109.47398 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47268 * 300.00028 * 20 18 16 24 24 C 1.40717 * 119.50871 * 0.27696 * 15 14 13 25 25 C 1.37615 * 119.74803 * 359.97438 * 24 15 14 26 26 C 1.47451 * 108.56309 * 335.90696 * 10 9 8 27 27 H 1.09000 * 109.47923 * 300.00420 * 1 2 3 28 28 H 1.09001 * 109.47189 * 60.00197 * 1 2 3 29 29 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47495 * 239.99398 * 2 1 3 31 31 H 1.09005 * 109.46863 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46598 * 299.99057 * 3 2 1 33 33 H 1.08991 * 109.47094 * 59.99703 * 3 2 1 34 34 H 1.08994 * 109.47262 * 54.99790 * 4 2 1 35 35 H 1.09004 * 109.46998 * 295.00307 * 4 2 1 36 36 H 1.09003 * 110.99440 * 323.98216 * 8 6 5 37 37 H 1.08999 * 110.99441 * 87.76255 * 8 6 5 38 38 H 1.09000 * 110.37555 * 278.24480 * 9 8 6 39 39 H 1.08994 * 110.37774 * 155.89744 * 9 8 6 40 40 H 1.09008 * 109.46933 * 170.83911 * 11 10 9 41 41 H 1.09004 * 109.47382 * 50.84660 * 11 10 9 42 42 H 1.07998 * 119.87277 * 359.97438 * 13 12 11 43 43 H 1.08008 * 120.12380 * 179.69269 * 14 13 12 44 44 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.12753 * 180.02562 * 24 15 14 46 46 H 1.08003 * 119.88271 * 180.02562 * 25 24 15 47 47 H 1.08999 * 109.88236 * 120.39469 * 26 10 9 48 48 H 1.09001 * 109.88541 * 241.42051 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 3.4640 -0.8236 1.1921 6 6 4.0448 -1.4854 2.3177 7 1 3.3351 -2.1840 2.7607 8 6 4.5327 -0.4569 3.3718 9 6 5.6545 -1.2503 4.0873 10 7 6.3075 -2.0312 3.0150 11 6 6.7784 -3.3277 3.5201 12 6 7.9312 -3.1097 4.4659 13 6 9.2277 -3.0829 3.9756 14 6 10.2884 -2.8907 4.8310 15 6 10.0524 -2.7089 6.2062 16 6 11.1339 -2.5043 7.0936 17 1 12.0656 -2.1005 6.7255 18 6 10.9974 -2.8251 8.4490 19 7 10.0339 -3.6194 8.8393 20 14 12.1906 -2.1190 9.7007 21 1 12.1164 -0.6361 9.6737 22 1 11.8324 -2.6075 11.0565 23 1 13.5715 -2.5516 9.3671 24 6 8.7318 -2.7318 6.6917 25 6 7.6867 -2.9307 5.8188 26 6 5.3448 -2.2115 1.9128 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6053 -1.7196 1.2953 35 1 1.7515 -0.1581 2.1370 36 1 4.9320 0.4359 2.8906 37 1 3.7325 -0.1992 4.0655 38 1 5.2287 -1.9173 4.8368 39 1 6.3682 -0.5671 4.5476 40 1 7.1061 -3.9460 2.6843 41 1 5.9663 -3.8292 4.0466 42 1 9.4062 -3.2185 2.9191 43 1 11.2981 -2.8751 4.4476 44 1 9.9395 -3.8420 9.7787 45 1 8.5391 -2.5929 7.7453 46 1 6.6723 -2.9482 6.1890 47 1 5.7437 -1.7749 0.9971 48 1 5.1481 -3.2730 1.7623 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343585401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:45 Heat of formation + Delta-G solvation = -54.939239 kcal Electronic energy + Delta-G solvation = -24191.546424 eV Core-core repulsion = 20823.615074 eV Total energy + Delta-G solvation = -3367.931351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.59361 -39.41160 -38.27150 -36.00166 -35.45062 -33.08888 -31.30451 -30.86719 -29.58244 -28.00925 -27.88362 -26.61324 -25.11630 -23.02145 -22.17179 -21.99215 -21.38145 -21.06330 -19.20043 -18.13267 -17.28118 -17.02432 -16.61689 -16.09552 -15.76041 -15.70224 -15.55000 -15.08820 -14.97240 -14.54769 -14.35460 -13.88730 -13.82916 -13.72736 -13.59978 -13.43909 -13.12210 -13.01843 -12.89997 -12.75402 -12.61787 -12.48922 -12.32778 -12.15213 -12.04223 -11.92421 -11.74274 -11.67703 -11.46506 -11.35983 -11.20620 -10.97863 -10.44633 -9.36622 -9.24621 -9.10175 -8.62640 -6.31442 0.96565 1.18575 1.37447 1.48433 1.53396 2.21041 2.57024 2.72320 3.19832 3.60879 3.73616 3.85149 3.90880 3.97086 4.08817 4.17419 4.28513 4.31055 4.31979 4.47789 4.51357 4.58378 4.62465 4.65697 4.71666 4.76379 4.79744 4.82173 4.89619 4.95610 5.01044 5.06149 5.06618 5.06652 5.13184 5.17901 5.23703 5.39343 5.41945 5.44710 5.50245 5.73266 5.96533 6.05023 6.12479 6.21425 6.30594 6.32081 6.42247 6.72588 6.96357 7.06688 8.34239 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.002310 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.361682 B =12119.715345 C =12379.714002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.060 3.940 5 O -0.386 6.386 6 C 0.077 3.923 7 H 0.080 0.920 8 C -0.141 4.141 9 C 0.051 3.949 10 N -0.534 5.534 11 C 0.120 3.880 12 C -0.194 4.194 13 C -0.075 4.075 14 C -0.246 4.246 15 C 0.078 3.922 16 C -0.503 4.503 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.826 5.826 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.260 1.260 24 C -0.190 4.190 25 C -0.093 4.093 26 C 0.045 3.955 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.287 0.713 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 4.913 -11.806 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.016 4.016 5 O -0.305 6.305 6 C 0.018 3.982 7 H 0.098 0.902 8 C -0.179 4.179 9 C -0.076 4.076 10 N -0.259 5.259 11 C -0.006 4.006 12 C -0.195 4.195 13 C -0.093 4.093 14 C -0.265 4.265 15 C 0.076 3.924 16 C -0.533 4.533 17 H 0.090 0.910 18 C -0.180 4.180 19 N -0.452 5.452 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.210 4.210 25 C -0.111 4.111 26 C -0.082 4.082 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.697 5.110 -11.955 21.960 hybrid contribution 0.112 -0.388 1.337 1.396 sum -17.585 4.722 -10.619 21.078 Atomic orbital electron populations 1.21761 0.92872 1.02519 1.02795 1.21122 0.96578 0.96540 0.97144 1.21767 1.00861 0.95449 1.01949 1.22797 0.80231 0.99800 0.98771 1.87900 1.21160 1.78670 1.42785 1.23266 0.94739 0.93487 0.86682 0.90208 1.23128 0.97933 0.98842 0.97983 1.22849 0.95011 0.96351 0.93416 1.63617 1.35956 1.17430 1.08890 1.20890 0.94129 0.89422 0.96202 1.19256 0.93969 1.13178 0.93122 1.20642 0.92404 0.98430 0.97857 1.21166 0.97584 1.13430 0.94339 1.17963 0.93447 0.88602 0.92388 1.19796 0.99864 1.39893 0.93741 0.90956 1.26747 0.97741 0.92504 1.00984 1.69875 1.30801 1.25645 1.18878 0.85268 0.78598 0.79507 0.76418 1.18625 1.19066 1.18405 1.21244 0.92661 1.08245 0.98823 1.20724 0.97077 0.99976 0.93367 1.22830 0.90166 0.99749 0.95484 0.92139 0.91270 0.91984 0.90995 0.93584 0.91880 0.92669 0.92590 0.92965 0.90767 0.89361 0.93462 0.92190 0.90264 0.94476 0.87019 0.88881 0.90198 0.88320 0.88055 0.90370 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.19 71.98 0.66 -0.78 16 2 C -0.10 -1.36 3.16 -10.79 -0.03 -1.40 16 3 C -0.14 -2.16 9.09 71.99 0.65 -1.50 16 4 C 0.06 0.99 5.15 71.98 0.37 1.36 16 5 O -0.39 -8.52 9.61 -148.98 -1.43 -9.95 16 6 C 0.08 1.70 3.43 31.77 0.11 1.81 16 7 H 0.08 1.52 7.82 -2.39 -0.02 1.51 16 8 C -0.14 -3.32 6.81 31.98 0.22 -3.11 16 9 C 0.05 1.53 5.60 86.77 0.49 2.01 16 10 N -0.53 -16.70 5.15 -890.08 -4.59 -21.28 16 11 C 0.12 4.02 4.71 85.56 0.40 4.42 16 12 C -0.19 -8.25 5.12 -19.67 -0.10 -8.35 16 13 C -0.07 -3.38 9.67 22.22 0.21 -3.16 16 14 C -0.25 -12.58 9.80 22.73 0.22 -12.35 16 15 C 0.08 4.38 5.57 -21.29 -0.12 4.26 16 16 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 17 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 18 C 0.03 1.80 5.14 85.26 0.44 2.24 16 19 N -0.83 -44.10 10.95 21.83 0.24 -43.86 16 20 Si 0.98 39.14 29.59 68.60 2.03 41.17 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 25 C -0.09 -4.29 8.88 22.22 0.20 -4.09 16 26 C 0.05 1.15 6.64 86.64 0.58 1.72 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 0.86 7.82 -2.38 -0.02 0.85 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 1.38 6.97 -2.39 -0.02 1.37 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.08 2.44 7.97 -2.38 -0.02 2.42 16 41 H 0.04 1.16 7.79 -2.38 -0.02 1.14 16 42 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 44 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 45 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 46 H 0.10 4.19 7.46 -2.91 -0.02 4.17 16 47 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 48 H 0.07 1.57 7.55 -2.39 -0.02 1.55 16 Total: -1.00 -60.67 381.79 1.86 -58.81 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.90 Total: 29.95 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 4.71 Total: -54.83 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -4.35 Total: -65.15 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.43 Total: -9.95 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -60.67 1.86 -58.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343585401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.872 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds