Wall clock time and date at job start Tue Mar 31 2020 07:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47424 * 2 1 4 4 C 1.53004 * 109.46552 * 240.00115 * 2 1 3 5 5 C 1.50707 * 109.47178 * 60.00372 * 4 2 1 6 6 H 1.07997 * 119.99599 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99930 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99567 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00342 * 0.02562 * 7 5 4 10 10 H 1.48509 * 109.47077 * 89.99771 * 9 7 5 11 11 H 1.48498 * 109.47176 * 209.99516 * 9 7 5 12 12 H 1.48503 * 109.47056 * 329.99750 * 9 7 5 13 13 C 1.52997 * 109.47154 * 120.00645 * 2 1 3 14 14 N 1.46500 * 109.47160 * 299.99483 * 13 2 1 15 15 C 1.34773 * 119.99913 * 179.97438 * 14 13 2 16 16 O 1.21274 * 120.00284 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99652 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46901 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 15 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.09007 * 109.46561 * 299.99502 * 1 2 3 27 27 H 1.09002 * 109.47023 * 59.99067 * 1 2 3 28 28 H 1.08996 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46957 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47324 * 300.00743 * 3 2 1 31 31 H 1.09007 * 109.46845 * 60.00672 * 3 2 1 32 32 H 1.09000 * 109.46915 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47784 * 300.00284 * 4 2 1 34 34 H 0.97003 * 120.00004 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47204 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47310 * 59.99560 * 13 2 1 37 37 H 0.96998 * 119.99656 * 0.02562 * 14 13 2 38 38 H 1.08992 * 109.47447 * 60.00244 * 17 15 14 39 39 H 1.08999 * 109.46636 * 299.99870 * 17 15 14 40 40 H 1.08995 * 109.47671 * 59.99705 * 18 17 15 41 41 H 1.09004 * 109.46984 * 299.99721 * 18 17 15 42 42 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 43 43 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 44 44 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8672 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4321 0.1383 -4.8058 9 14 2.9447 -2.0003 -3.9036 10 1 2.0859 -3.2110 -3.9496 11 1 3.7369 -1.9075 -5.1562 12 1 3.8648 -2.0899 -2.7414 13 6 2.0400 -0.7214 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8770 -0.4917 3.6694 16 8 2.5742 -1.4778 3.7806 17 6 1.3743 0.2183 4.9000 18 6 1.8844 -0.5030 6.1491 19 6 1.3745 0.2182 7.3984 20 6 1.8764 -0.4926 8.6288 21 6 3.0844 -0.1278 9.1934 22 6 3.5445 -0.7794 10.3223 23 6 2.7965 -1.7955 10.8871 24 6 1.5911 -2.1639 10.3194 25 6 1.1287 -1.5091 9.1932 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7488 -1.2495 34 1 1.6664 -0.1930 -5.6869 35 1 3.1301 -0.7218 1.2489 36 1 1.6766 -1.7491 1.2491 37 1 0.9939 0.7576 2.3564 38 1 0.2843 0.2184 4.8997 39 1 1.7377 1.2460 4.9003 40 1 2.9743 -0.5027 6.1493 41 1 1.5213 -1.5308 6.1489 42 1 0.2845 0.2183 7.3986 43 1 1.7380 1.2459 7.3985 44 1 3.6687 0.6664 8.7524 45 1 4.4884 -0.4947 10.7631 46 1 3.1558 -2.3043 11.7693 47 1 1.0087 -2.9606 10.7581 48 1 0.1846 -1.7936 8.7526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346025977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:19 Heat of formation + Delta-G solvation = -50.081242 kcal Electronic energy + Delta-G solvation = -23648.937194 eV Core-core repulsion = 20281.216501 eV Total energy + Delta-G solvation = -3367.720692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -0.50 seconds Orbital eigenvalues (eV) -39.84494 -39.43307 -37.30770 -35.11005 -33.62911 -32.14739 -31.41844 -31.16155 -28.05538 -27.45432 -26.57311 -25.81157 -23.13345 -22.85239 -22.07775 -21.00741 -20.14670 -18.26897 -17.19940 -16.90739 -16.54951 -16.12975 -15.66402 -15.30680 -15.26884 -14.37526 -14.19774 -13.87575 -13.71844 -13.69482 -13.48130 -13.41814 -13.01368 -12.72989 -12.48077 -12.28805 -12.23171 -11.99033 -11.71547 -11.34569 -11.24975 -11.14133 -11.12938 -11.01574 -10.86218 -10.62842 -10.49758 -9.98170 -9.89267 -9.74412 -9.42233 -9.19651 -9.00585 -8.95036 -8.78819 -8.54353 -6.05141 -4.02424 1.07821 1.12518 2.79024 3.30983 3.36206 3.39170 3.43278 3.54580 4.42881 4.44974 4.53099 4.71904 4.74343 4.83379 4.83600 4.99169 5.13354 5.23503 5.27470 5.30547 5.37724 5.41114 5.45262 5.51436 5.52326 5.62878 5.74383 5.78515 5.91923 6.09821 6.10918 6.14047 6.18390 6.19581 6.23797 6.30481 6.37272 6.48607 6.58111 6.69921 6.73492 6.89745 7.00217 7.03899 7.19380 7.35855 7.68431 7.79273 8.39557 8.52036 8.98729 9.57592 11.07522 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034986 B = 0.002041 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.121659 B =13716.208659 C =14014.713619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.723 5.723 15 C 0.505 3.495 16 O -0.548 6.548 17 C -0.142 4.142 18 C -0.097 4.097 19 C -0.083 4.083 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 1.356 28.978 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.375 5.375 15 C 0.291 3.709 16 O -0.426 6.426 17 C -0.182 4.182 18 C -0.135 4.135 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.420 0.639 28.840 28.850 hybrid contribution 0.322 -0.497 -0.365 0.696 sum -0.097 0.142 28.475 28.475 Atomic orbital electron populations 1.21776 0.94810 1.01240 1.00764 1.20692 0.95815 0.95914 0.93972 1.21770 1.00437 0.95596 1.00761 1.19594 0.96284 0.95494 0.92643 1.21079 1.31813 1.13363 0.88624 0.90403 1.25004 0.95724 0.96773 0.96001 1.69903 1.45914 1.40573 0.97873 0.86853 0.81329 0.83904 0.77650 1.20375 1.21495 1.19005 1.21617 0.98832 0.96007 0.83328 1.46211 1.53327 1.32033 1.05902 1.20671 0.80532 0.84802 0.84872 1.90695 1.38242 1.26626 1.86988 1.21696 1.02558 1.00812 0.93095 1.21294 1.01787 0.99551 0.90833 1.20671 1.00954 0.98863 0.91522 1.19914 0.94866 0.96562 0.96445 1.21086 0.95882 1.00339 0.96233 1.21154 0.99739 0.96500 0.96329 1.21144 0.95323 0.97891 1.00251 1.21154 0.96481 0.99740 0.96343 1.21084 1.00051 0.96136 0.96270 0.94989 0.90886 0.93434 0.93430 0.90886 0.94985 0.96381 0.96827 0.92800 0.91945 0.91957 0.76550 0.88986 0.88992 0.91033 0.91029 0.90831 0.90826 0.86069 0.86175 0.86289 0.86173 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.63 8.20 -34.44 -0.28 -13.92 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.13 2.09 4.56 -4.04 -0.02 2.07 16 14 N -0.72 -9.72 4.96 -60.29 -0.30 -10.02 16 15 C 0.51 6.92 7.83 -10.98 -0.09 6.83 16 16 O -0.55 -9.85 15.98 5.56 0.09 -9.76 16 17 C -0.14 -1.27 5.70 -27.88 -0.16 -1.43 16 18 C -0.10 -0.92 4.49 -26.74 -0.12 -1.04 16 19 C -0.08 -0.61 5.34 -27.88 -0.15 -0.76 16 20 C -0.08 -0.68 5.13 -104.62 -0.54 -1.21 16 21 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 22 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 23 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 26 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 27 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 31 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.40 4.44 6.16 -40.82 -0.25 4.19 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.07 0.46 8.09 -51.93 -0.42 0.05 16 43 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 44 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -32.10 382.77 -9.55 -41.65 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.23 Total: 1.56 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -2.98 Total: -19.70 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.47 Total: -36.40 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.10 -9.55 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346025977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.432 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.50 seconds